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Gene: COLEC10 (collectin subfamily member 10) Pan paniscus

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Symbol:

COLEC10

Name:

collectin subfamily member 10

RGD ID:

12015458

Description:

ENCODES a protein that exhibits carbohydrate binding (inferred); chemoattractant activity (inferred); D-mannose binding (inferred); INVOLVED IN complement activation, lectin pathway (inferred); cranial skeletal system development (inferred); innate immune response (inferred); ASSOCIATED WITH 3MC syndrome 3 (ortholog); hepatocellular carcinoma (ortholog); hereditary multiple exostoses (ortholog); FOUND IN collagen trimer (inferred); cytoplasm (inferred); extracellular region (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

collectin-10

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	136,493,978 - 136,536,679 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	112,005,965 - 112,045,823 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	115,758,592 - 115,798,548 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	118,277,527 - 118,317,271 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	118,277,484 - 118,317,271 (+)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

3MC syndrome 3 (ISO)

hepatocellular carcinoma (ISO)

hereditary multiple exostoses (ISO)

Paget's disease of bone 5 (ISO)

trichorhinophalangeal syndrome type I (ISO)

trichorhinophalangeal syndrome type III (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

complement activation, lectin pathway (IEA)

cranial skeletal system development (IEA)

innate immune response (IEA)

ossification (IEA)

positive chemotaxis (IEA)

positive regulation of opsonization (IEA)

proteolysis (IEA)

regulation of immune system process (IEA)

signal transduction (IEA)

Cellular Component

collagen trimer (IEA)

cytoplasm (IEA)

extracellular region (IEA)

extracellular space (IEA)

Molecular Function

carbohydrate binding (IEA)

chemoattractant activity (IEA)

D-mannose binding (IEA)

growth factor activity (IEA)

protein binding (ISO)

References

Genomics

Comparative Map Data

COLEC10
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	136,493,978 - 136,536,679 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	112,005,965 - 112,045,823 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	115,758,592 - 115,798,548 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	118,277,527 - 118,317,271 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	118,277,484 - 118,317,271 (+)	Ensembl	panpan1.1		panPan2

COLEC10
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	118,952,263 - 119,108,455 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	118,995,452 - 119,108,455 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	8	119,964,502 - 120,120,694 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	120,148,627 - 120,188,388 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	8	120,148,626 - 120,188,381	NCBI
Celera	8	116,268,405 - 116,308,560 (+)	NCBI		Celera
Cytogenetic Map	8	q24.12	NCBI
HuRef	8	115,407,207 - 115,446,861 (+)	NCBI		HuRef
CHM1_1	8	120,120,440 - 120,160,224 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	8	120,080,592 - 120,236,891 (+)	NCBI		T2T-CHM13v2.0

Colec10
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	54,274,170 - 54,329,755 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	54,274,170 - 54,329,754 (+)	Ensembl		GRCm39 Ensembl
GRCm38	15	54,410,774 - 54,466,360 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	54,410,774 - 54,466,358 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	15	54,242,329 - 54,297,913 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	15	54,240,857 - 54,296,441 (+)	NCBI		MGSCv36	mm8
Celera	15	55,962,632 - 56,012,952 (+)	NCBI		Celera
Cytogenetic Map	15	D1	NCBI
cM Map	15	21.15	NCBI

Colec10
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	87,634,686 - 87,695,465 (+)	NCBI		GRCr8
mRatBN7.2	7	85,744,895 - 85,806,368 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	85,744,895 - 85,805,675 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	87,642,304 - 87,703,067 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	89,843,493 - 89,904,267 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	89,648,965 - 89,709,734 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	93,975,451 - 94,035,999 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	93,975,451 - 94,035,999 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	94,613,483 - 94,674,031 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	90,784,784 - 90,847,510 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	90,818,944 - 90,878,041 (+)	NCBI
Celera	7	82,565,965 - 82,626,913 (+)	NCBI		Celera
Cytogenetic Map	7	q32	NCBI

Colec10
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955417	24,954,938 - 24,994,188 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955417	24,954,969 - 24,994,188 (+)	NCBI	ChiLan1.0	ChiLan1.0

COLEC10
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	13	18,291,168 - 18,331,918 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	13	18,291,051 - 18,330,617 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	13	18,292,931 - 18,333,845 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	13	18,611,234 - 18,652,172 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	13	18,611,276 - 18,649,791 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	13	18,342,227 - 18,383,162 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	13	18,437,903 - 18,478,782 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	13	18,668,769 - 18,709,959 (+)	NCBI		UU_Cfam_GSD_1.0

Colec10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	19,985,456 - 20,042,273 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936470	27,416,494 - 27,449,206 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936470	27,416,471 - 27,449,206 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

COLEC10
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	19,692,830 - 19,744,135 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	19,692,990 - 20,143,740 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

COLEC10
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	113,663,768 - 113,704,070 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	113,664,263 - 113,702,720 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666039	26,593,820 - 26,792,248 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Colec10
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624763	17,301,993 - 17,352,559 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624763	17,302,075 - 17,350,682 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003823324	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSPPAT00000064785 ⟹ ENSPPAP00000041858

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	8	118,277,484 - 118,317,271 (+)	Ensembl

RefSeq Acc Id:

XM_003823324 ⟹ XP_003823372

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	7	136,493,978 - 136,536,679 (+)	NCBI
NHGRI_mPanPan1	8	112,005,965 - 112,045,823 (+)	NCBI
Mhudiblu_PPA_v0	8	115,758,592 - 115,798,548 (+)	NCBI
PanPan1.1	8	118,277,527 - 118,317,271 (+)	NCBI

Sequence:

show sequence

AAATACTTCCCCTTCTTCCCCAAAGCAGGAGGTTTTATTTAAAATAAAGCTGTTTATTTGGCAT
TTCTGGGAGACCCTTTTCTGAGGAACCACAGCAATGAATGGCTTTGCATCCTTGCTTCGAAGAA
ACCAATTTATCCTCCTGGTACTATTTCTTTTGCAAATTCAGAGTCTGGGTCTGGATATTGATAG
CCGTCCTACCGCTGAAGTCTGTGCCACACACACAATTTCACCAGGACCCAAAGGAGATGATGGT
GAAAAAGGAGATCCAGGAGAAGAGGGAAAGCATGGCAAAGTGGGACGCATGGGGCCAAAAGGAA
TTAAAGGAGAACTGGGTGATATGGGAGATCAGGGCAATATTGGCAAGACTGGGCCCATTGGGAA
GAAGGGTGACAAAGGGGAAAAAGGTTTGCTTGGCATACCTGGAGAAAAAGGCAAAGCAGGTACT
GTCTGTGATTGTGGAAGATACCGGAAATTTGTTGGACAACTGGATATTAGTATTGCTCGGCTCA
AGACATCTATGAAGTTTGTCAAGAATGTGATAGCAGGGATTAGGGAAACTGAAGAGAAATTCTA
CTACATCGTGCAGGAAGAGAAGAACTACAGGGAATCCCTAACCCACTGCAGGATTCGGGGTGGA
ATGCTAGCCATGCCCAAGGATGAAGCTGCCAACACACTCATCGCTGACTATGTTGCCAAGAGTG
GCTTCTTTCGGGTGTTCATTGGCGTGAATGACCTTGAAAGGGAGGGACAGTACGTGTTCACAGA
CAACACTCCACTGCAGAACTATAGCAACTGGAATGAGGGGGAACCCAGCGACCCCTATGGTCAT
GAGGACTGTGTGGAGATGCTGAGCTCTGGCAGATGGAATGACACAGAGTGCCATCTTACCATGT
ACTTTGTCTGTGAGTTCATCAAGAAGAAAAAGTAACTTCCCTCATCCTACGTATTTGCTATTTT
CCTGTGACCGTCATTACAGTTATTGTTATCCATCCTTTTTTTCCTAATTGTACTACATTTGATC
TGAGTCAACATAGCTAGGAAATGCTAAACTGAGGTATGGAGCCTCCATCATCA

hide sequence

Protein Sequences


Protein RefSeqs	XP_003823372	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000041858.1

RefSeq Acc Id:

XP_003823372 ⟸ XM_003823324

- UniProtKB:

A0A2R9CLH5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MNGFASLLRRNQFILLVLFLLQIQSLGLDIDSRPTAEVCATHTISPGPKGDDGEKGDPGEEGKH
GKVGRMGPKGIKGELGDMGDQGNIGKTGPIGKKGDKGEKGLLGIPGEKGKAGTVCDCGRYRKFV
GQLDISIARLKTSMKFVKNVIAGIRETEEKFYYIVQEEKNYRESLTHCRIRGGMLAMPKDEAAN
TLIADYVAKSGFFRVFIGVNDLEREGQYVFTDNTPLQNYSNWNEGEPSDPYGHEDCVEMLSSGR
WNDTECHLTMYFVCEFIKKKK

hide sequence

Ensembl Acc Id:

ENSPPAP00000041858 ⟸ ENSPPAT00000064785

Protein Domains

C-type lectin

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000043531	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000064785.1	UniProtKB/TrEMBL
Gene3D-CATH	3.10.100.10	UniProtKB/TrEMBL
InterPro	C-type_lectin-like	UniProtKB/TrEMBL
	C-type_lectin-like/link_sf	UniProtKB/TrEMBL
	C-type_lectin_CS	UniProtKB/TrEMBL
	CLec_Tetranectin-domain	UniProtKB/TrEMBL
	Collagen	UniProtKB/TrEMBL
	Collectin_CTLD	UniProtKB/TrEMBL
	CTDL_fold	UniProtKB/TrEMBL
KEGG Report	pps:100983810	UniProtKB/TrEMBL
NCBI Gene	COLEC10	ENTREZGENE
PANTHER	C-TYPE LECTIN DOMAIN FAMILY 11 MEMBER A	UniProtKB/TrEMBL
	TETRANECTIN-RELATED	UniProtKB/TrEMBL
Pfam	Collagen	UniProtKB/TrEMBL
	Lectin_C	UniProtKB/TrEMBL
PROSITE	C_TYPE_LECTIN_1	UniProtKB/TrEMBL
	C_TYPE_LECTIN_2	UniProtKB/TrEMBL
SMART	CLECT	UniProtKB/TrEMBL
Superfamily-SCOP	SSF56436	UniProtKB/TrEMBL
UniProt	A0A2R9CLH5	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

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Imported Disease Annotations - CTD

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