VPS13A (vacuolar protein sorting 13 homolog A) - Rat Genome Database

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Gene: VPS13A (vacuolar protein sorting 13 homolog A) Pan paniscus
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Symbol: VPS13A
Name: vacuolar protein sorting 13 homolog A
RGD ID: 12011138
Description: INVOLVED IN adult locomotory behavior (ortholog); autophagy (ortholog); brain-derived neurotrophic factor receptor signaling pathway (ortholog); ASSOCIATED WITH choreaacanthocytosis (ortholog); choreatic disease (ortholog); genetic disease (ortholog); FOUND IN endoplasmic reticulum (ortholog); mitochondrion (ortholog); neuron projection (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: intermembrane lipid transfer protein VPS13A; vacuolar protein sorting-associated protein 13A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21176,337,834 - 76,581,678 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1976,343,550 - 76,587,617 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0947,424,921 - 47,668,150 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1976,032,292 - 76,275,155 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl976,032,286 - 76,269,636 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
VPS13A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21176,337,834 - 76,581,678 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1976,343,550 - 76,587,617 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0947,424,921 - 47,668,150 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1976,032,292 - 76,275,155 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl976,032,286 - 76,269,636 (+)Ensemblpanpan1.1panPan2
VPS13A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38977,177,534 - 77,421,537 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl977,177,445 - 77,421,537 (+)EnsemblGRCh38hg38GRCh38
GRCh37979,792,450 - 80,036,453 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36978,982,181 - 79,222,219 (+)NCBINCBI36Build 36hg18NCBI36
Celera950,369,484 - 50,609,533 (+)NCBICelera
Cytogenetic Map9q21.2NCBI
HuRef949,623,817 - 49,863,840 (+)NCBIHuRef
CHM1_1979,938,844 - 80,179,199 (+)NCBICHM1_1
T2T-CHM13v2.0989,334,100 - 89,578,104 (+)NCBIT2T-CHM13v2.0
Vps13a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391916,592,730 - 16,758,433 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1916,592,730 - 16,758,297 (-)EnsemblGRCm39 Ensembl
GRCm381916,615,366 - 16,781,071 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1916,615,366 - 16,780,933 (-)EnsemblGRCm38mm10GRCm38
MGSCv371916,691,164 - 16,855,417 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361916,683,693 - 16,847,946 (-)NCBIMGSCv36mm8
Celera1917,275,535 - 17,440,000 (-)NCBICelera
Cytogenetic Map19A- BNCBI
cM Map1911.71NCBI
Vps13a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81223,328,784 - 223,555,500 (-)NCBIGRCr8
mRatBN7.21213,901,999 - 214,128,638 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1213,901,999 - 214,128,555 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1222,230,525 - 222,462,915 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01229,165,841 - 229,392,426 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01221,985,083 - 222,217,463 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01235,352,513 - 235,813,597 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1235,653,121 - 235,813,030 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01242,670,357 - 243,128,666 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41219,987,826 - 220,221,494 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11220,153,337 - 220,385,366 (-)NCBI
Celera1211,235,485 - 211,455,239 (-)NCBICelera
Cytogenetic Map1q43NCBI
Vps13a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555122,039,115 - 2,267,099 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555122,037,803 - 2,267,197 (-)NCBIChiLan1.0ChiLan1.0
VPS13A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1181,191,125 - 81,426,337 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl181,192,349 - 81,426,322 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha181,654,790 - 81,889,759 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0181,603,680 - 81,839,234 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl181,604,885 - 81,839,239 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1181,389,076 - 81,624,112 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0181,110,788 - 81,346,344 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0181,839,940 - 82,075,231 (-)NCBIUU_Cfam_GSD_1.0
Vps13a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947128,315,230 - 128,566,983 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650312,606,014 - 12,858,005 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650312,606,019 - 12,857,807 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VPS13A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1230,069,368 - 230,331,200 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11230,069,339 - 230,331,343 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21256,783,098 - 256,879,557 (+)NCBISscrofa10.2Sscrofa10.2susScr3
VPS13A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11288,140,842 - 88,380,966 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1288,167,258 - 88,379,614 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603876,526,493 - 76,716,430 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Vps13a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248114,640,090 - 4,901,510 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248114,639,926 - 4,902,749 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000007888   ⟹   ENSPPAP00000001607
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl976,032,286 - 76,269,636 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000007968   ⟹   ENSPPAP00000001625
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl976,032,305 - 76,269,636 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000008092   ⟹   ENSPPAP00000001649
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl976,032,305 - 76,261,290 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000008187   ⟹   ENSPPAP00000001664
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl976,032,305 - 76,238,941 (+)Ensembl
RefSeq Acc Id: XM_003811456   ⟹   XP_003811504
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21176,337,834 - 76,581,678 (+)NCBI
NHGRI_mPanPan1976,343,550 - 76,587,617 (+)NCBI
Mhudiblu_PPA_v0947,424,921 - 47,668,150 (-)NCBI
PanPan1.1976,032,292 - 76,275,155 (+)NCBI
Sequence:
RefSeq Acc Id: XM_003811458   ⟹   XP_003811506
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21176,337,834 - 76,545,169 (+)NCBI
NHGRI_mPanPan1976,343,550 - 76,551,108 (+)NCBI
Mhudiblu_PPA_v0947,461,439 - 47,668,150 (-)NCBI
PanPan1.1976,032,305 - 76,238,941 (+)NCBI
Sequence:
RefSeq Acc Id: XM_003811459   ⟹   XP_003811507
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21176,337,834 - 76,545,169 (+)NCBI
NHGRI_mPanPan1976,343,550 - 76,551,108 (+)NCBI
Mhudiblu_PPA_v0947,461,439 - 47,668,150 (-)NCBI
PanPan1.1976,032,305 - 76,236,813 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003811504 (Get FASTA)   NCBI Sequence Viewer  
  XP_003811506 (Get FASTA)   NCBI Sequence Viewer  
  XP_003811507 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000001607.1
  ENSPPAP00000001625.1
  ENSPPAP00000001649.1
  ENSPPAP00000001664.1
RefSeq Acc Id: XP_003811504   ⟸   XM_003811456
- Peptide Label: isoform X1
- UniProtKB: A0A2R8ZDI0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003811507   ⟸   XM_003811459
- Peptide Label: isoform X3
- UniProtKB: A0A2R8Z9J5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003811506   ⟸   XM_003811458
- Peptide Label: isoform X2
- UniProtKB: A0A2R8Z9J5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSPPAP00000001607   ⟸   ENSPPAT00000007888
Ensembl Acc Id: ENSPPAP00000001625   ⟸   ENSPPAT00000007968
Ensembl Acc Id: ENSPPAP00000001649   ⟸   ENSPPAT00000008092
Ensembl Acc Id: ENSPPAP00000001664   ⟸   ENSPPAT00000008187

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000005660 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000007888.1 UniProtKB/TrEMBL
  ENSPPAT00000007968.1 UniProtKB/TrEMBL
  ENSPPAT00000008092.1 UniProtKB/TrEMBL
  ENSPPAT00000008187.1 UniProtKB/TrEMBL
InterPro Autophagy-rel_C UniProtKB/TrEMBL
  SHR-BD UniProtKB/TrEMBL
  VPS13 UniProtKB/TrEMBL
  VPS13-like_N UniProtKB/TrEMBL
  VPS13_C UniProtKB/TrEMBL
  VPS13_C UniProtKB/TrEMBL
  VPS13_mid_rpt UniProtKB/TrEMBL
  VPS13_N2 UniProtKB/TrEMBL
KEGG Report pps:100987745 UniProtKB/TrEMBL
NCBI Gene VPS13A ENTREZGENE
PANTHER PTHR16166 UniProtKB/TrEMBL
  VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 13A UniProtKB/TrEMBL
Pfam ATG_C UniProtKB/TrEMBL
  Chorein_N UniProtKB/TrEMBL
  SHR-BD UniProtKB/TrEMBL
  VPS13 UniProtKB/TrEMBL
  VPS13_C UniProtKB/TrEMBL
  VPS13_C UniProtKB/TrEMBL
  VPS13_mid_rpt UniProtKB/TrEMBL
UniProt A0A2R8Z9F4_PANPA UniProtKB/TrEMBL
  A0A2R8Z9H7_PANPA UniProtKB/TrEMBL
  A0A2R8Z9J5 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8ZDI0 ENTREZGENE, UniProtKB/TrEMBL