ERC2 (ELKS/RAB6-interacting/CAST family member 2) - Rat Genome Database

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Gene: ERC2 (ELKS/RAB6-interacting/CAST family member 2) Pan paniscus
Analyze
Symbol: ERC2
Name: ELKS/RAB6-interacting/CAST family member 2
RGD ID: 12000416
Description: ENCODES a protein that exhibits PDZ domain binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN synapse organization (ortholog); FOUND IN Golgi-associated vesicle (ortholog); growth cone (ortholog); neuronal cell body (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ERC protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2255,491,457 - 56,468,006 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1355,496,228 - 56,472,777 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0355,438,875 - 56,417,072 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1356,659,377 - 57,599,384 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl356,836,941 - 57,599,248 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
ERC2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2255,491,457 - 56,468,006 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1355,496,228 - 56,472,777 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0355,438,875 - 56,417,072 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1356,659,377 - 57,599,384 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl356,836,941 - 57,599,248 (-)Ensemblpanpan1.1panPan2
ERC2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38355,508,311 - 56,468,467 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl355,508,311 - 56,469,095 (-)EnsemblGRCh38hg38GRCh38
GRCh37355,542,339 - 56,502,495 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36355,517,376 - 56,477,431 (-)NCBINCBI36Build 36hg18NCBI36
Celera355,509,269 - 56,468,649 (-)NCBICelera
Cytogenetic Map3p14.3NCBI
HuRef355,591,133 - 56,551,243 (-)NCBIHuRef
CHM1_1355,493,671 - 56,453,566 (-)NCBICHM1_1
T2T-CHM13v2.0355,542,510 - 56,508,891 (-)NCBIT2T-CHM13v2.0
Erc2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391427,344,232 - 28,200,494 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1427,344,385 - 28,200,494 (+)EnsemblGRCm39 Ensembl
GRCm381427,622,275 - 28,478,537 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1427,622,428 - 28,478,537 (+)EnsemblGRCm38mm10GRCm38
MGSCv371428,435,628 - 29,291,723 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361426,449,326 - 27,305,403 (+)NCBIMGSCv36mm8
Celera1423,854,528 - 24,727,160 (+)NCBICelera
Cytogenetic Map14A3NCBI
cM Map1416.51NCBI
Erc2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8162,819,399 - 3,680,258 (+)NCBIGRCr8
mRatBN7.2162,812,712 - 3,673,624 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl162,848,620 - 3,670,776 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx162,819,340 - 3,680,212 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0163,965,020 - 4,825,629 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0162,824,168 - 3,685,138 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0163,258,580 - 4,283,592 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl163,293,599 - 3,679,222 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0163,260,419 - 4,388,774 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4162,932,781 - 3,596,299 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1162,932,780 - 3,596,297 (+)NCBI
Celera162,811,369 - 3,459,316 (+)NCBICelera
Cytogenetic Map16p16NCBI
Erc2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554305,513,662 - 6,308,882 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554305,345,191 - 6,308,909 (-)NCBIChiLan1.0ChiLan1.0
ERC2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12033,842,753 - 34,748,038 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2033,842,753 - 34,746,491 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2033,769,262 - 34,672,553 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02034,114,565 - 35,020,292 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2034,114,216 - 35,020,299 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12033,558,663 - 34,463,362 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02033,918,155 - 34,823,551 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02034,092,812 - 35,039,347 (+)NCBIUU_Cfam_GSD_1.0
Erc2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118172,937,212 - 173,811,690 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364736,075,769 - 6,950,263 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364736,075,811 - 6,532,671 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ERC2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1337,388,517 - 38,367,504 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11337,388,513 - 38,367,512 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21341,281,049 - 41,624,117 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ERC2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12216,851,862 - 17,817,504 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2217,034,445 - 17,817,522 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041149,054,724 - 150,028,608 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Erc2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624822756,550 - 1,807,175 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624822756,532 - 1,806,129 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_034956687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034956688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034956689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034956690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034956691 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034956692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034956693 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034956694 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034956695 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055110956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063602456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004670574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004670575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008625007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008625008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010111441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010111442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010111443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010111444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010111445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSPPAT00000054372   ⟹   ENSPPAP00000031507
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl356,836,941 - 57,599,248 (-)Ensembl
RefSeq Acc Id: XM_034956693   ⟹   XP_034812584
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2255,491,457 - 56,468,005 (-)NCBI
NHGRI_mPanPan1355,496,228 - 56,472,773 (-)NCBI
Mhudiblu_PPA_v0355,438,875 - 56,417,069 (-)NCBI
RefSeq Acc Id: XM_055110956   ⟹   XP_054966931
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2255,491,457 - 56,468,006 (-)NCBI
NHGRI_mPanPan1355,496,228 - 56,472,774 (-)NCBI
RefSeq Acc Id: XM_063602456   ⟹   XP_063458526
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2255,494,281 - 56,468,005 (-)NCBI
RefSeq Acc Id: XR_008625007
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2255,502,181 - 56,468,005 (-)NCBI
NHGRI_mPanPan1355,506,952 - 56,472,773 (-)NCBI
RefSeq Acc Id: XR_008625008
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2255,502,181 - 56,468,005 (-)NCBI
NHGRI_mPanPan1355,506,952 - 56,472,773 (-)NCBI
RefSeq Acc Id: XR_010111441
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2255,494,289 - 56,468,005 (-)NCBI
RefSeq Acc Id: XR_010111442
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2255,494,299 - 56,468,005 (-)NCBI
RefSeq Acc Id: XR_010111443
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2255,502,181 - 56,468,005 (-)NCBI
RefSeq Acc Id: XR_010111444
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2255,546,108 - 56,468,005 (-)NCBI
RefSeq Acc Id: XR_010111445
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2255,502,181 - 56,468,005 (-)NCBI
Protein Sequences
Protein RefSeqs XP_034812584 (Get FASTA)   NCBI Sequence Viewer  
  XP_054966931 (Get FASTA)   NCBI Sequence Viewer  
  XP_063458526 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000031507.1
RefSeq Acc Id: XP_034812584   ⟸   XM_034956693
- Peptide Label: isoform X2
- UniProtKB: A0A2R9BYB9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSPPAP00000031507   ⟸   ENSPPAT00000054372
RefSeq Acc Id: XP_054966931   ⟸   XM_055110956
- Peptide Label: isoform X1
- UniProtKB: A0A2R9BYB9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063458526   ⟸   XM_063602456
- Peptide Label: isoform X3
- UniProtKB: A0A2R9BYB9 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000038693 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000054372.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.1490 UniProtKB/TrEMBL
InterPro ELKS/CAST UniProtKB/TrEMBL
NCBI Gene ERC2 ENTREZGENE
PANTHER ELKS/RAB6-INTERACTING/CAST PROTEIN UniProtKB/TrEMBL
  PTHR18861:SF3 UniProtKB/TrEMBL
Pfam Cast UniProtKB/TrEMBL
Superfamily-SCOP Tropomyosin UniProtKB/TrEMBL
UniProt A0A2R9BYB9 ENTREZGENE, UniProtKB/TrEMBL