LOC100982294 (class I histocompatibility antigen, Gogo-C*0202 alpha chain) - Rat Genome Database

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Pathways
Gene: LOC100982294 (class I histocompatibility antigen, Gogo-C*0202 alpha chain) Pan paniscus
Analyze
Symbol: LOC100982294 (Ensembl: HLA-C)
Name: class I histocompatibility antigen, Gogo-C*0202 alpha chain (Ensembl:major histocompatibility complex, class I, C)
RGD ID: 11995363
Description: ENCODES a protein that exhibits receptor ligand activity (ortholog); INVOLVED IN positive regulation of natural killer cell mediated cytotoxicity (ortholog); ASSOCIATED WITH allergic asthma (ortholog); Chronic Hepatitis B (ortholog); COVID-19 (ortholog); FOUND IN extracellular space (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: class I histocompatibility antigen, Gogo-C*0203 alpha chain; MHC class I antigen; PAPA-C; Papa-C*0301
RGD Orthologs
Human
Pig
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2545,836,246 - 45,839,645 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1641,797,800 - 41,801,173 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0631,020,373 - 31,024,959 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1631,910,788 - 31,915,345 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl631,910,788 - 31,914,286 (-)EnsemblpanPan2panpan1.1
JBrowse:




References
Additional References at PubMed
PMID:9435339   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC100982294
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2545,836,246 - 45,839,645 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1641,797,800 - 41,801,173 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0631,020,373 - 31,024,959 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1631,910,788 - 31,915,345 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl631,910,788 - 31,914,286 (-)EnsemblpanPan2panpan1.1
HLA-C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38631,268,749 - 31,272,092 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl631,268,749 - 31,272,130 (-)Ensemblhg38GRCh38
GRCh37631,236,526 - 31,239,869 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36631,344,508 - 31,347,834 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34631,344,508 - 31,347,834NCBI
Celera632,835,242 - 32,838,561 (-)NCBICelera
Cytogenetic Map6p21.33NCBI
HuRef631,037,198 - 31,040,575 (-)NCBIHuRef
CHM1_1631,239,250 - 31,242,627 (-)NCBICHM1_1
T2T-CHM13v2.0631,134,915 - 31,138,292 (-)NCBIT2T-CHM13v2.0
SLA-3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1722,938,211 - 22,942,735 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2724,641,613 - 24,645,323 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap7p1.1NCBI


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_024929089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024929090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034961724 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034961725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034961726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055113374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063605241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AJ001975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ001976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JARIFH020000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KJ696711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KJ696712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KJ696713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY613159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY613160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY613161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY613162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY613163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY613164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY613165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY613169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY652706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY652707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY652708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY652709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY652710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY652711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY652712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY652713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY652714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY652716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY652717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSPPAT00000007042   ⟹   ENSPPAP00000001430
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl631,910,788 - 31,914,286 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000007088   ⟹   ENSPPAP00000001437
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl631,911,111 - 31,914,105 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000007095   ⟹   ENSPPAP00000001440
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl631,911,111 - 31,914,105 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000007109   ⟹   ENSPPAP00000001445
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl631,911,357 - 31,914,105 (-)Ensembl
RefSeq Acc Id: XM_024929090   ⟹   XP_024784858
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2545,836,246 - 45,839,645 (-)NCBI
NHGRI_mPanPan1641,797,800 - 41,801,122 (-)NCBI
Mhudiblu_PPA_v0631,020,373 - 31,023,768 (-)NCBI
PanPan1.1631,910,788 - 31,914,286 (-)NCBI
Sequence:
RefSeq Acc Id: XM_055113374   ⟹   XP_054969349
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2545,836,246 - 45,839,645 (-)NCBI
NHGRI_mPanPan1641,797,800 - 41,801,173 (-)NCBI
RefSeq Acc Id: XM_063605241   ⟹   XP_063461311
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2545,836,246 - 45,839,645 (-)NCBI
Protein Sequences
Protein RefSeqs XP_024784858 (Get FASTA)   NCBI Sequence Viewer  
  XP_054969349 (Get FASTA)   NCBI Sequence Viewer  
  XP_063461311 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AHX83881 (Get FASTA)   NCBI Sequence Viewer  
  AHX83882 (Get FASTA)   NCBI Sequence Viewer  
  AHX83883 (Get FASTA)   NCBI Sequence Viewer  
  ASK05172 (Get FASTA)   NCBI Sequence Viewer  
  ASK05173 (Get FASTA)   NCBI Sequence Viewer  
  ASK05174 (Get FASTA)   NCBI Sequence Viewer  
  ASK05175 (Get FASTA)   NCBI Sequence Viewer  
  ASK05176 (Get FASTA)   NCBI Sequence Viewer  
  ASK05177 (Get FASTA)   NCBI Sequence Viewer  
  ASK05178 (Get FASTA)   NCBI Sequence Viewer  
  ASK05182 (Get FASTA)   NCBI Sequence Viewer  
  AST23059 (Get FASTA)   NCBI Sequence Viewer  
  AST23060 (Get FASTA)   NCBI Sequence Viewer  
  AST23061 (Get FASTA)   NCBI Sequence Viewer  
  AST23062 (Get FASTA)   NCBI Sequence Viewer  
  AST23063 (Get FASTA)   NCBI Sequence Viewer  
  AST23064 (Get FASTA)   NCBI Sequence Viewer  
  AST23065 (Get FASTA)   NCBI Sequence Viewer  
  AST23066 (Get FASTA)   NCBI Sequence Viewer  
  AST23067 (Get FASTA)   NCBI Sequence Viewer  
  AST23069 (Get FASTA)   NCBI Sequence Viewer  
  AST23070 (Get FASTA)   NCBI Sequence Viewer  
  CAA05123 (Get FASTA)   NCBI Sequence Viewer  
  CAA05124 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000001430.1
  ENSPPAP00000001437.1
  ENSPPAP00000001440.1
  ENSPPAP00000001445.1
  ENSPPAP00050048361
RefSeq Acc Id: XP_024784858   ⟸   XM_024929090
- Peptide Label: isoform X3
- UniProtKB: A0A2R8ZFP5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSPPAP00000001430   ⟸   ENSPPAT00000007042
Ensembl Acc Id: ENSPPAP00000001440   ⟸   ENSPPAT00000007095
Ensembl Acc Id: ENSPPAP00000001437   ⟸   ENSPPAT00000007088
Ensembl Acc Id: ENSPPAP00000001445   ⟸   ENSPPAT00000007109
RefSeq Acc Id: XP_054969349   ⟸   XM_055113374
- Peptide Label: isoform X1
- UniProtKB: A0A023T6C6 (UniProtKB/TrEMBL),   A0A220QK49 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063461311   ⟸   XM_063605241
- Peptide Label: isoform X2
- UniProtKB: A0A2R8Z9A7 (UniProtKB/TrEMBL)
Protein Domains
Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000006130 Ensembl, UniProtKB/TrEMBL
  ENSPPAG00050034182 ENTREZGENE
Ensembl Transcript ENSPPAT00000007042.1 UniProtKB/TrEMBL
  ENSPPAT00000007088.1 UniProtKB/TrEMBL
  ENSPPAT00000007095.1 UniProtKB/TrEMBL
  ENSPPAT00000007109.1 UniProtKB/TrEMBL
  ENSPPAT00050073316 ENTREZGENE
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
  3.30.500.10 UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_C1-set UniProtKB/TrEMBL
  MHC_class-I_related UniProtKB/TrEMBL
  MHC_I-like_Ag-recog UniProtKB/TrEMBL
  MHC_I-like_Ag-recog_sf UniProtKB/TrEMBL
  MHC_I/II-like_Ag-recog UniProtKB/TrEMBL
  MHC_I_a_a1/a2 UniProtKB/TrEMBL
  MHC_I_a_C UniProtKB/TrEMBL
NCBI Gene Papa-C ENTREZGENE
PANTHER HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, C ALPHA CHAIN UniProtKB/TrEMBL
  MHC CLASS I-RELATED UniProtKB/TrEMBL
Pfam C1-set UniProtKB/TrEMBL
  MHC_I UniProtKB/TrEMBL
  MHC_I_C UniProtKB/TrEMBL
PRINTS MHCCLASSI UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
SMART IGc1 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
  SSF54452 UniProtKB/TrEMBL
UniProt A0A023T6C6 ENTREZGENE, UniProtKB/TrEMBL
  A0A220QK49 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8Z9A3_PANPA UniProtKB/TrEMBL
  A0A2R8Z9A7 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8ZFP5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-03-13 LOC100982294  class I histocompatibility antigen, Gogo-C*0202 alpha chain  LOC100982294  class I histocompatibility antigen, Gogo-C*0203 alpha chain  Symbol and/or name change 5135510 APPROVED
2023-06-21 LOC100982294  class I histocompatibility antigen, Gogo-C*0203 alpha chain  PAPA-C  class I histocompatibility antigen, Gogo-C*0203 alpha chain  Symbol and/or name change 5135510 APPROVED
2023-05-02 PAPA-C  class I histocompatibility antigen, Gogo-C*0203 alpha chain  Papa-C  class I histocompatibility antigen, Gogo-C*0202 alpha chain  Symbol and/or name change 5135510 APPROVED