LOC100990258 (V-type proton ATPase subunit F) - Rat Genome Database

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Gene: LOC100990258 (V-type proton ATPase subunit F) Pan paniscus
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Symbol: LOC100990258
Name: V-type proton ATPase subunit F
RGD ID: 11992313
Description: ENCODES a protein that exhibits proton-transporting ATPase activity, rotational mechanism (inferred); INVOLVED IN proton transmembrane transport (inferred); FOUND IN membrane (inferred); proton-transporting V-type ATPase, V1 domain (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ATPase, H+ transporting, lysosomal 14kDa, V1 subunit F pseudogene
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21672,809,668 - 72,810,376 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11576,970,567 - 76,971,192 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01562,521,478 - 62,522,144 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11580,971,139 - 80,971,735 (-)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008968230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_008968230   ⟹   XP_008966478
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21672,809,668 - 72,810,376 (+)NCBI
NHGRI_mPanPan11576,970,567 - 76,971,192 (+)NCBI
Mhudiblu_PPA_v01562,521,478 - 62,522,144 (+)NCBI
PanPan1.11580,971,139 - 80,971,735 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008966478 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000002830
  ENSPPAP00000002830.1
  ENSPPAP00000008867.1
  ENSPPAP00000008869.1
RefSeq Acc Id: XP_008966478   ⟸   XM_008968230
- UniProtKB: A0A2R8ZYL4 (UniProtKB/TrEMBL),   A0A2R8ZV80 (UniProtKB/TrEMBL)
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000012238 ENTREZGENE, UniProtKB/TrEMBL
  ENSPPAG00000027671 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000013330.1 UniProtKB/TrEMBL
  ENSPPAT00000031507.1 UniProtKB/TrEMBL
  ENSPPAT00000031509.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.10580 UniProtKB/TrEMBL
InterPro ATPase_V1-cplx_f_g_su UniProtKB/TrEMBL
  ATPase_V1-cplx_fsu_euk UniProtKB/TrEMBL
  ATPase_V1_fsu_sf UniProtKB/TrEMBL
KEGG Report pps:100990258 UniProtKB/TrEMBL
NCBI Gene LOC100990258 ENTREZGENE
PANTHER V-TYPE PROTON ATPASE SUBUNIT F UniProtKB/TrEMBL
  VACUOLAR ATP SYNTHASE SUBUNIT F UniProtKB/TrEMBL
Pfam ATP-synt_F UniProtKB/TrEMBL
PIRSF ATPase_V1_F_euk UniProtKB/TrEMBL
Superfamily-SCOP SSF159468 UniProtKB/TrEMBL
UniProt A0A2R8ZV80 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8ZYL4 ENTREZGENE, UniProtKB/TrEMBL