LOC100979338 (putative HLA class I histocompatibility antigen, alpha chain H) - Rat Genome Database

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Gene: LOC100979338 (putative HLA class I histocompatibility antigen, alpha chain H) Pan paniscus
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Symbol: LOC100979338 (Ensembl: Papa-A)
Name: putative HLA class I histocompatibility antigen, alpha chain H (Ensembl:patr class I histocompatibility antigen, A-2 alpha chain-like)
RGD ID: 11951660
Description: ENCODES a protein that exhibits peptide antigen binding (inferred); signaling receptor binding (inferred); INVOLVED IN antigen processing and presentation (inferred); antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-independent (inferred); antigen processing and presentation of endogenous peptide antigen via MHC class Ib (inferred); FOUND IN cell surface (inferred); early endosome membrane (inferred); ER to Golgi transport vesicle membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: HLA-H; MHC class I antigen HLA-H ortholog
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2544,479,066 - 44,482,746 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1640,441,631 - 40,446,110 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0629,663,779 - 29,667,352 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1630,333,349 - 30,337,039 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl630,333,360 - 30,391,211 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000043269   ⟹   ENSPPAP00000020475
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl630,333,360 - 30,336,451 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000043280   ⟹   ENSPPAP00000020486
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl630,333,517 - 30,391,039 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000043289   ⟹   ENSPPAP00000020495
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl630,333,517 - 30,391,039 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000043308   ⟹   ENSPPAP00000020514
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl630,333,727 - 30,336,448 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000043409   ⟹   ENSPPAP00000020614
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl630,388,142 - 30,391,211 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000043411   ⟹   ENSPPAP00000020616
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl630,388,142 - 30,391,039 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000043416   ⟹   ENSPPAP00000020621
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl630,388,142 - 30,390,957 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000043421   ⟹   ENSPPAP00000020626
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl630,388,142 - 30,390,864 (+)Ensembl
RefSeq Acc Id: XM_034961685   ⟹   XP_034817576
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2544,479,199 - 44,482,746 (+)NCBI
NHGRI_mPanPan1640,441,659 - 40,446,110 (+)NCBI
Mhudiblu_PPA_v0629,663,779 - 29,667,352 (+)NCBI
RefSeq Acc Id: XM_055113326   ⟹   XP_054969301
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2544,479,066 - 44,482,746 (+)NCBI
NHGRI_mPanPan1640,441,631 - 40,446,082 (+)NCBI
RefSeq Acc Id: XP_034817576   ⟸   XM_034961685
- Peptide Label: isoform X1
- UniProtKB: A0A2R9AXD2 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSPPAP00000020614   ⟸   ENSPPAT00000043409
Ensembl Acc Id: ENSPPAP00000020616   ⟸   ENSPPAT00000043411
Ensembl Acc Id: ENSPPAP00000020621   ⟸   ENSPPAT00000043416
Ensembl Acc Id: ENSPPAP00000020626   ⟸   ENSPPAT00000043421
Ensembl Acc Id: ENSPPAP00000020486   ⟸   ENSPPAT00000043280
Ensembl Acc Id: ENSPPAP00000020495   ⟸   ENSPPAT00000043289
Ensembl Acc Id: ENSPPAP00000020475   ⟸   ENSPPAT00000043269
Ensembl Acc Id: ENSPPAP00000020514   ⟸   ENSPPAT00000043308
RefSeq Acc Id: XP_054969301   ⟸   XM_055113326
- Peptide Label: isoform X2
- UniProtKB: A0A2R9AXD2 (UniProtKB/TrEMBL)
Protein Domains
Ig-like   Immunoglobulin C1-set


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000033438 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000043269.1 UniProtKB/TrEMBL
  ENSPPAT00000043280.1 UniProtKB/TrEMBL
  ENSPPAT00000043289.1 UniProtKB/TrEMBL
  ENSPPAT00000043308.1 UniProtKB/TrEMBL
  ENSPPAT00000043409.1 UniProtKB/TrEMBL
  ENSPPAT00000043411.1 UniProtKB/TrEMBL
  ENSPPAT00000043416.1 UniProtKB/TrEMBL
  ENSPPAT00000043421.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
  3.30.500.10 UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig/MHC_CS UniProtKB/TrEMBL
  Ig_C1-set UniProtKB/TrEMBL
  MHC_class-I_related UniProtKB/TrEMBL
  MHC_I-like_Ag-recog UniProtKB/TrEMBL
  MHC_I-like_Ag-recog_sf UniProtKB/TrEMBL
  MHC_I/II-like_Ag-recog UniProtKB/TrEMBL
  MHC_I_a_a1/a2 UniProtKB/TrEMBL
  MHC_I_a_C UniProtKB/TrEMBL
NCBI Gene LOC100979338 ENTREZGENE
PANTHER HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, A ALPHA CHAIN UniProtKB/TrEMBL
  HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, ALPHA CHAIN H-RELATED UniProtKB/TrEMBL
  MHC CLASS I-RELATED UniProtKB/TrEMBL
Pfam C1-set UniProtKB/TrEMBL
  MHC_I UniProtKB/TrEMBL
  MHC_I_C UniProtKB/TrEMBL
PRINTS MHCCLASSI UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
  IG_MHC UniProtKB/TrEMBL
SMART IGc1 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
  SSF54452 UniProtKB/TrEMBL
UniProt A0A2R9AT37_PANPA UniProtKB/TrEMBL
  A0A2R9ATG8_PANPA UniProtKB/TrEMBL
  A0A2R9ATH0_PANPA UniProtKB/TrEMBL
  A0A2R9ATH6_PANPA UniProtKB/TrEMBL
  A0A2R9AXD2 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9AXE6_PANPA UniProtKB/TrEMBL
  A0A2R9AZJ5_PANPA UniProtKB/TrEMBL
  A0A2R9AZT0_PANPA UniProtKB/TrEMBL