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Gene: SMARCAL1 (SNF2 related chromatin remodeling annealing helicase 1) Pan paniscus

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Symbol:

SMARCAL1

Name:

SNF2 related chromatin remodeling annealing helicase 1 (Ensembl:SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1)

RGD ID:

11943659

Description:

ENCODES a protein that exhibits ATP binding (inferred); ATP-dependent activity, acting on DNA (inferred); ATP-dependent DNA/DNA annealing activity (inferred); INVOLVED IN DNA damage response (inferred); DNA repair (inferred); double-strand break repair via nonhomologous end joining (inferred); ASSOCIATED WITH atrioventricular septal defect (ortholog); atypical hemolytic-uremic syndrome (ortholog); Dwarfism (ortholog); FOUND IN DNA replication factor A complex (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	119,040,341 - 119,111,253 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	119,055,327 - 119,126,253 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	103,672,934 - 103,743,802 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	222,276,294 - 222,347,258 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	222,276,353 - 222,347,258 (+)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

atrioventricular septal defect (ISO)

atypical hemolytic-uremic syndrome (ISO)

Dwarfism (ISO)

focal segmental glomerulosclerosis (ISO)

focal segmental glomerulosclerosis 1 (ISO)

genetic disease (ISO)

kidney disease (ISO)

microcephaly (ISO)

nephrotic syndrome (ISO)

nephrotic syndrome type 2 (ISO)

Neurodevelopmental Disorders (ISO)

primary immunodeficiency disease (ISO)

primary microcephaly (ISO)

Schimke immuno-osseous dysplasia (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

DNA damage response (IEA)

DNA repair (IEA)

double-strand break repair via nonhomologous end joining (IEA)

regulation of transcription by RNA polymerase II (IEA)

replication fork processing (IEA)

Cellular Component

DNA replication factor A complex (IEA,ISO)

nuclear replication fork (IEA)

nucleoplasm (IEA)

nucleus (IEA)

site of double-strand break (IEA)

Molecular Function

ATP binding (IEA)

ATP-dependent activity, acting on DNA (IEA)

ATP-dependent DNA/DNA annealing activity (IEA)

helicase activity (IEA)

hydrolase activity (IEA)

protein binding (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

SMARCAL1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	119,040,341 - 119,111,253 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	119,055,327 - 119,126,253 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	103,672,934 - 103,743,802 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	222,276,294 - 222,347,258 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	222,276,353 - 222,347,258 (+)	Ensembl	panpan1.1		panPan2

SMARCAL1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	216,412,484 - 216,483,053 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	216,412,383 - 216,483,053 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	217,277,207 - 217,347,776 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	216,986,820 - 217,056,021 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	217,104,083 - 217,173,278	NCBI
Celera	2	211,045,111 - 211,115,648 (+)	NCBI		Celera
Cytogenetic Map	2	q35	NCBI
HuRef	2	209,131,595 - 209,202,094 (+)	NCBI		HuRef
CHM1_1	2	217,282,680 - 217,353,309 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	216,894,907 - 216,965,465 (+)	NCBI		T2T-CHM13v2.0

Smarcal1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	72,575,593 - 72,675,949 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	72,622,410 - 72,672,293 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	72,536,695 - 72,636,790 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	72,583,251 - 72,633,134 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	72,629,825 - 72,683,364 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	72,516,478 - 72,566,341 (+)	NCBI		MGSCv36	mm8
Celera	1	73,151,284 - 73,205,338 (+)	NCBI		Celera
Cytogenetic Map	1	C3	NCBI
cM Map	1	36.72	NCBI

Smarcal1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	81,689,446 - 81,735,406 (+)	NCBI		GRCr8
mRatBN7.2	9	74,239,718 - 74,286,156 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	74,240,241 - 74,286,146 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	82,695,787 - 82,741,329 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	87,824,678 - 87,870,214 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	86,211,255 - 86,256,747 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	79,943,775 - 79,990,230 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	79,944,132 - 79,990,229 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	79,716,012 - 79,762,216 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	71,780,870 - 71,827,780 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	71,930,360 - 71,974,752 (+)	NCBI
Celera	9	71,834,400 - 71,880,797 (+)	NCBI		Celera
Cytogenetic Map	9	q33	NCBI

Smarcal1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955453	16,719,931 - 16,784,709 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955453	16,724,286 - 16,784,129 (-)	NCBI	ChiLan1.0	ChiLan1.0

SMARCAL1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	37	23,364,941 - 23,425,206 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	37	23,367,220 - 23,419,248 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	37	24,193,550 - 24,253,982 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	37	23,392,255 - 23,452,837 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	37	23,392,945 - 23,447,926 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	37	23,277,174 - 23,331,540 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	37	23,229,412 - 23,289,770 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	37	23,247,796 - 23,308,267 (+)	NCBI		UU_Cfam_GSD_1.0

Smarcal1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	171,702,084 - 171,797,210 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936586	828,650 - 888,047 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936586	828,661 - 887,988 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SMARCAL1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	118,627,497 - 118,688,396 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	118,627,734 - 118,688,005 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	131,503,125 - 131,506,635 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SMARCAL1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	102,253,187 - 102,319,356 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	102,255,453 - 102,319,330 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	97,083,733 - 97,149,570 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Smarcal1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624823	8,644,826 - 8,706,591 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624823	8,645,340 - 8,708,039 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003818587	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_003818588	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008971918	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008971919	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034955098	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_004670316	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSPPAT00000062529 ⟹ ENSPPAP00000039618

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	2B	222,276,353 - 222,347,258 (+)	Ensembl

Ensembl Acc Id:

ENSPPAT00000062532 ⟹ ENSPPAP00000039621

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	2B	222,278,585 - 222,347,183 (+)	Ensembl

RefSeq Acc Id:

XM_003818587 ⟹ XP_003818635

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	13	119,040,363 - 119,111,253 (+)	NCBI
NHGRI_mPanPan1	2B	119,055,327 - 119,126,253 (+)	NCBI
Mhudiblu_PPA_v0	2B	103,672,941 - 103,743,802 (+)	NCBI
PanPan1.1	2B	222,276,294 - 222,347,258 (+)	NCBI

Sequence:

show sequence

ATCATTCTTACTTTTGGAAGCGAAACTGCGGCCGCGTTGCCTGCTGGGAAATGTAGTTCAGCGG
TGGCCGAGCCCTTCAGGCCTGGCCGCTACAATAAGGCTGGCGAACTCGCAGCGCTTGAATACCC
GTGGCCTAACCGTCCACTCGGAAGACCGGTCCTGCTCGGGAGGCTCTGCAGTCGCGCCTGGGGT
CAGGGCCGGGGGCGAATGCGGCTCGCGTTCTAGGCCTCCCTGGGTTGGAAAAAGACTATTTTAG
CAAGTGTCACGCCATGCTTTTGCCAACTTTCCAATTAAAGGTTGACATTCCTGCATAAGCATTT
CTCTGTGAAAATGTCCTTGCCTCTTACAGAGGAGCAGAGGAAAAAGATTGAAGAGAATCGACAA
AAGGCTCTGGCCCGCAGAGCTGAGAAGTTATTGGCAGAACAGCATCAGAGGACTAGCTCGGGCA
TCTCCATTGCTGGCAACCCATTCCAGGCCAAGCAAGGCCCATCCCAAAATTTCCCAAGGGAGTC
TTGTAAGCCAGTGAGCCATGGTGTCATTTTCAAGCAACAGAATCTCAGTAGCTCATCTAATGCT
GACCAAAGACCTCATGATTCCCACAGTTTTCAGGCAAAGGGAATATGGAAAAAGCCAGAAGAAA
TGCCCACAGCCTGCCCAGGCCACAGTCCACGTAGTCAAATGGCTCTCACTGGAATCTCTCCTCC
CTTGGCACAAAGTCCTCCAGAGGTCCCCAAACAACAGCTCTTGAGTTATGAGTTAGGTCAAGGT
CATGCTCAGGCTTCACCTGAGATCAGGTTCACACCCTTTGCTAACCCAACTCATAAGCCTCTGG
CCAAACCAAAGAGTTCCCAAGAGACACCAGCTCATTCCTCTGGACAGCCTCCCAGGGATGCTAA
GTTAGAGGCCAAGACAGCAAAAGCCTCCCCTTCGGGGCAGAACATTTCTTACATCCATTCTAGC
TCAGAGAGTGTAACGCCCAGGACAGAAGGAAGACTCCAACAGAAGTCAGGGTCCTCAGTCCAAA
AAGGAGTGAACTCTCAGAAGGGAAAGTGCGTAAGGAACGGCGATCGTTTCCAGGTGTTGATTGG
GTACAATGCGGAACTCATTGCAGTGTTTAAGACCCTGCCCAGCAAGAATTATGATCCTGACACC
AAGACGTGGAACTTCAGCATGAATGACTATAGTGCCTTGATGAAAGCAGCCCAGAGCCTCCCCA
CGGTCAACCTGCAGCCTCTGGAATGGGCCTATGGCAGCAGCGAGTCACCCTCCACCAGCAGTGA
GGGACAGGCCGGCCTTCCATCAGCTCCATCCCTTTCGTTTGTCAAAGGGCGATGCATGCTCATC
TCCAGGGCCTACTTCGAGGCAGACATCAGTTATTCACAGGACCTTATTGCGCTTTTTAAACAGA
TGGATTCCAGAAGATATGATGTCAAGACCAGGAAGTGGAGCTTTCTCTTGGAAGAGCACAGTAA
ACTAATTGCAAAGGTGCGCTGCCTCCCACAAGTTCAGCTGGACCCTCTGCCCATGACTCTCACC
CTGGCGTTTGCTTCTCAGCTCAAGAAGACATCTCTCAGTCTCACGCCAGATGTCCCAGAGGCAG
ACCTTTCTGAAGTGGACCCCAAGCTCGTGTCTAATCTGATGCCCTTTCAGAGAGCTGGAGTCAA
TTTTGCCATAGCGAAAGGAGGCCGCCTGCTGCTCGCTGACGACATGGGCCTGGGGAAGACCATC
CAAGCCATCTGCATCGCAGCCTTTTACCAGAAGGAGTGGCCGCTCCTGGTGGTGGTGCCATCCT
CCGTGCGCTTCACCTGGGAGCAGGCCTTCCTTCGGTGGCTGCCATCTCTGAGCCCAGATTGCAT
CAACGTCGTGGTGACTGGGAAGGACCGCCTGACAGCTGGCCTGATCAACATTGTCAGCTTTGAC
CTTCTTAGCAAGTTGGAAAAACAGCTAAAAACCCCTTTTAAAGTTGTCATCATTGATGAATCTC
ACTTCCTCAAAAACAGTAGGACTGCCCGCTGTCGAGCAGCTATGCCGGTCCTAAAGGTTGCCAA
GAGGGTGATCCTGTTGTCGGGCACACCAGCCATGTCCCGGCCCGCAGAGCTCTACACGCAGATC
ATAGCAGTCAAGCCAACTTTCTTCCCCCAGTTTCATGCCTTTGGACTTCGCTACTGTGATGCCA
AACGGATGCCTTGGGGGTGGGACTACTCAGGTTCCTCCAACCTGGGAGAGCTGAAGCTCCTGCT
GGAGGAAGCAGTCATGCTGCGGCGCCTCAAGTCCGACGTCCTTTCCCAGCTGCCTGCCAAGCAG
CGCAAGATAGTGGTGATTGCCCCAGGACGGATCAATGCCAGGACCAGAGCTGCCCTGGATGCTG
CAGCCAAGGAAATGACCACCAAGGACAAAACTAAACAGCAGCAGAAAGATGCCCTCATTCTCTT
CTTCAACAGAACAGCTGAAGCTAAAATCCCGTCTGTCATTGAATATATCTTGGACCTACTGGAA
AGTGGAAGAGAGAAGTTTTTAGTATTTGCACACCATAAGGTGGTCCTGGACGCAATTACGCAAG
AGCTTGAGAGAAAGCACGTGCAGCACATCCGCATCGATGGCTCCACCTCATCAGCTGAGCGGGA
GGACCTGTGCCAGCAGTTCCAACTGTCGGAGAGGCATGCCGTGGCCGTGCTGTCCATCACCGCT
GCCAATATGGGCCTCACCTTCTCCTCGGCTGACCTGGTGGTGTTTGCTGAGCTGTTTTGGAACC
CAGGGGTGCTGATCCAGGCTGAGGACCGCGTGCACCGCATTGGACAGACCAGCTCCGTGGGCAT
TCACTACCTCGTGGCAAAGGGCACAGCTGATGACTACCTTTGGCCCCTGATTCAAGAGAAGATT
AAAGTTCTGGCGGAAGCCGGGCTTTCTGAGACCAATTTTTCAGAAATGACAGAATCCACTGATT
ACCTCTACAAGGACCCAAAGCAGCAGAAGATCTACGACCTATTCCAGAAGTCCTTTGAGAAAGA
AGGAAGTGATATGGAGCTCCTGGAAGCAGCAGAGTCCTTTGACCCAGGAAGTGCTTCAGGAACA
TCTGGAAGTAGTTCCCAGAACATGGGAGACACCCTGGATGAAAGCTCATTGACAGCCAGTCCAC
AGAAGAAAAGGAGATTTGAATTTTTTGATAACTGGGACAGCTTTACGTCTCCCCTGTAAAAGGG
GCAAAAAGAAAAAATAAAAAGCATTTTAAAATCATGGAATTGAAATAAAATAATGTATTTTGTT
TTAAAA

hide sequence

RefSeq Acc Id:

XM_003818588 ⟹ XP_003818636

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	13	119,040,405 - 119,111,253 (+)	NCBI
NHGRI_mPanPan1	2B	119,055,362 - 119,126,253 (+)	NCBI
Mhudiblu_PPA_v0	2B	103,673,249 - 103,743,802 (+)	NCBI
PanPan1.1	2B	222,276,628 - 222,347,258 (+)	NCBI

Sequence:

show sequence

GAGATCGTAGGGGTGGGAGTGGGGCGTGGCGCCCGCTTACCTTGAGGCTGGGTTGGAAAAAGAC
TATTTTAGCAAGTGTCACGCCATGCTTTTGCCAACTTTCCAATTAAAGGTTGACATTCCTGCAT
AAGCATTTCTCTGTGAAAATGTCCTTGCCTCTTACAGAGGAGCAGAGGAAAAAGATTGAAGAGA
ATCGACAAAAGGCTCTGGCCCGCAGAGCTGAGAAGTTATTGGCAGAACAGCATCAGAGGACTAG
CTCGGGCATCTCCATTGCTGGCAACCCATTCCAGGCCAAGCAAGGCCCATCCCAAAATTTCCCA
AGGGAGTCTTGTAAGCCAGTGAGCCATGGTGTCATTTTCAAGCAACAGAATCTCAGTAGCTCAT
CTAATGCTGACCAAAGACCTCATGATTCCCACAGTTTTCAGGCAAAGGGAATATGGAAAAAGCC
AGAAGAAATGCCCACAGCCTGCCCAGGCCACAGTCCACGTAGTCAAATGGCTCTCACTGGAATC
TCTCCTCCCTTGGCACAAAGTCCTCCAGAGGTCCCCAAACAACAGCTCTTGAGTTATGAGTTAG
GTCAAGGTCATGCTCAGGCTTCACCTGAGATCAGGTTCACACCCTTTGCTAACCCAACTCATAA
GCCTCTGGCCAAACCAAAGAGTTCCCAAGAGACACCAGCTCATTCCTCTGGACAGCCTCCCAGG
GATGCTAAGTTAGAGGCCAAGACAGCAAAAGCCTCCCCTTCGGGGCAGAACATTTCTTACATCC
ATTCTAGCTCAGAGAGTGTAACGCCCAGGACAGAAGGAAGACTCCAACAGAAGTCAGGGTCCTC
AGTCCAAAAAGGAGTGAACTCTCAGAAGGGAAAGTGCGTAAGGAACGGCGATCGTTTCCAGGTG
TTGATTGGGTACAATGCGGAACTCATTGCAGTGTTTAAGACCCTGCCCAGCAAGAATTATGATC
CTGACACCAAGACGTGGAACTTCAGCATGAATGACTATAGTGCCTTGATGAAAGCAGCCCAGAG
CCTCCCCACGGTCAACCTGCAGCCTCTGGAATGGGCCTATGGCAGCAGCGAGTCACCCTCCACC
AGCAGTGAGGGACAGGCCGGCCTTCCATCAGCTCCATCCCTTTCGTTTGTCAAAGGGCGATGCA
TGCTCATCTCCAGGGCCTACTTCGAGGCAGACATCAGTTATTCACAGGACCTTATTGCGCTTTT
TAAACAGATGGATTCCAGAAGATATGATGTCAAGACCAGGAAGTGGAGCTTTCTCTTGGAAGAG
CACAGTAAACTAATTGCAAAGGTGCGCTGCCTCCCACAAGTTCAGCTGGACCCTCTGCCCATGA
CTCTCACCCTGGCGTTTGCTTCTCAGCTCAAGAAGACATCTCTCAGTCTCACGCCAGATGTCCC
AGAGGCAGACCTTTCTGAAGTGGACCCCAAGCTCGTGTCTAATCTGATGCCCTTTCAGAGAGCT
GGAGTCAATTTTGCCATAGCGAAAGGAGGCCGCCTGCTGCTCGCTGACGACATGGGCCTGGGGA
AGACCATCCAAGCCATCTGCATCGCAGCCTTTTACCAGAAGGAGTGGCCGCTCCTGGTGGTGGT
GCCATCCTCCGTGCGCTTCACCTGGGAGCAGGCCTTCCTTCGGTGGCTGCCATCTCTGAGCCCA
GATTGCATCAACGTCGTGGTGACTGGGAAGGACCGCCTGACAGCTGGCCTGATCAACATTGTCA
GCTTTGACCTTCTTAGCAAGTTGGAAAAACAGCTAAAAACCCCTTTTAAAGTTGTCATCATTGA
TGAATCTCACTTCCTCAAAAACAGTAGGACTGCCCGCTGTCGAGCAGCTATGCCGGTCCTAAAG
GTTGCCAAGAGGGTGATCCTGTTGTCGGGCACACCAGCCATGTCCCGGCCCGCAGAGCTCTACA
CGCAGATCATAGCAGTCAAGCCAACTTTCTTCCCCCAGTTTCATGCCTTTGGACTTCGCTACTG
TGATGCCAAACGGATGCCTTGGGGGTGGGACTACTCAGGTTCCTCCAACCTGGGAGAGCTGAAG
CTCCTGCTGGAGGAAGCAGTCATGCTGCGGCGCCTCAAGTCCGACGTCCTTTCCCAGCTGCCTG
CCAAGCAGCGCAAGATAGTGGTGATTGCCCCAGGACGGATCAATGCCAGGACCAGAGCTGCCCT
GGATGCTGCAGCCAAGGAAATGACCACCAAGGACAAAACTAAACAGCAGCAGAAAGATGCCCTC
ATTCTCTTCTTCAACAGAACAGCTGAAGCTAAAATCCCGTCTGTCATTGAATATATCTTGGACC
TACTGGAAAGTGGAAGAGAGAAGTTTTTAGTATTTGCACACCATAAGGTGGTCCTGGACGCAAT
TACGCAAGAGCTTGAGAGAAAGCACGTGCAGCACATCCGCATCGATGGCTCCACCTCATCAGCT
GAGCGGGAGGACCTGTGCCAGCAGTTCCAACTGTCGGAGAGGCATGCCGTGGCCGTGCTGTCCA
TCACCGCTGCCAATATGGGCCTCACCTTCTCCTCGGCTGACCTGGTGGTGTTTGCTGAGCTGTT
TTGGAACCCAGGGGTGCTGATCCAGGCTGAGGACCGCGTGCACCGCATTGGACAGACCAGCTCC
GTGGGCATTCACTACCTCGTGGCAAAGGGCACAGCTGATGACTACCTTTGGCCCCTGATTCAAG
AGAAGATTAAAGTTCTGGCGGAAGCCGGGCTTTCTGAGACCAATTTTTCAGAAATGACAGAATC
CACTGATTACCTCTACAAGGACCCAAAGCAGCAGAAGATCTACGACCTATTCCAGAAGTCCTTT
GAGAAAGAAGGAAGTGATATGGAGCTCCTGGAAGCAGCAGAGTCCTTTGACCCAGGAAGTGCTT
CAGGAACATCTGGAAGTAGTTCCCAGAACATGGGAGACACCCTGGATGAAAGCTCATTGACAGC
CAGTCCACAGAAGAAAAGGAGATTTGAATTTTTTGATAACTGGGACAGCTTTACGTCTCCCCTG
TAAAAGGGGCAAAAAGAAAAAATAAAAAGCATTTTAAAATCATGGAATTGAAATAAAATAATGT
ATTTTGTTTTAAAA

hide sequence

RefSeq Acc Id:

XM_008971918 ⟹ XP_008970166

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	13	119,040,341 - 119,111,253 (+)	NCBI
NHGRI_mPanPan1	2B	119,055,329 - 119,126,245 (+)	NCBI
Mhudiblu_PPA_v0	2B	103,672,942 - 103,743,802 (+)	NCBI
PanPan1.1	2B	222,276,294 - 222,347,258 (+)	NCBI

Sequence:

show sequence

ATCATTCTTACTTTTGGAAGCGAAACTGCGGCCGCGTTGCCTGCTGGGAAATGTAGTTCAGCGG
TGGCCGAGCCCTTCAGGCCTGGCCGCTACAATAAGGCTGGCGAACTCGCAGCGCTTGAATACCC
GTGGCCTAACCGTCCACTCGGAAGACCGGTCCTGCTCGGGAGGCTCTGCAGTCGCGCCTGGGGT
TGGAAAAAGACTATTTTAGCAAGTGTCACGCCATGCTTTTGCCAACTTTCCAATTAAAGGTTGA
CATTCCTGCATAAGCATTTCTCTGTGAAAATGTCCTTGCCTCTTACAGAGGAGCAGAGGAAAAA
GATTGAAGAGAATCGACAAAAGGCTCTGGCCCGCAGAGCTGAGAAGTTATTGGCAGAACAGCAT
CAGAGGACTAGCTCGGGCATCTCCATTGCTGGCAACCCATTCCAGGCCAAGCAAGGCCCATCCC
AAAATTTCCCAAGGGAGTCTTGTAAGCCAGTGAGCCATGGTGTCATTTTCAAGCAACAGAATCT
CAGTAGCTCATCTAATGCTGACCAAAGACCTCATGATTCCCACAGTTTTCAGGCAAAGGGAATA
TGGAAAAAGCCAGAAGAAATGCCCACAGCCTGCCCAGGCCACAGTCCACGTAGTCAAATGGCTC
TCACTGGAATCTCTCCTCCCTTGGCACAAAGTCCTCCAGAGGTCCCCAAACAACAGCTCTTGAG
TTATGAGTTAGGTCAAGGTCATGCTCAGGCTTCACCTGAGATCAGGTTCACACCCTTTGCTAAC
CCAACTCATAAGCCTCTGGCCAAACCAAAGAGTTCCCAAGAGACACCAGCTCATTCCTCTGGAC
AGCCTCCCAGGGATGCTAAGTTAGAGGCCAAGACAGCAAAAGCCTCCCCTTCGGGGCAGAACAT
TTCTTACATCCATTCTAGCTCAGAGAGTGTAACGCCCAGGACAGAAGGAAGACTCCAACAGAAG
TCAGGGTCCTCAGTCCAAAAAGGAGTGAACTCTCAGAAGGGAAAGTGCGTAAGGAACGGCGATC
GTTTCCAGGTGTTGATTGGGTACAATGCGGAACTCATTGCAGTGTTTAAGACCCTGCCCAGCAA
GAATTATGATCCTGACACCAAGACGTGGAACTTCAGCATGAATGACTATAGTGCCTTGATGAAA
GCAGCCCAGAGCCTCCCCACGGTCAACCTGCAGCCTCTGGAATGGGCCTATGGCAGCAGCGAGT
CACCCTCCACCAGCAGTGAGGGACAGGCCGGCCTTCCATCAGCTCCATCCCTTTCGTTTGTCAA
AGGGCGATGCATGCTCATCTCCAGGGCCTACTTCGAGGCAGACATCAGTTATTCACAGGACCTT
ATTGCGCTTTTTAAACAGATGGATTCCAGAAGATATGATGTCAAGACCAGGAAGTGGAGCTTTC
TCTTGGAAGAGCACAGTAAACTAATTGCAAAGGTGCGCTGCCTCCCACAAGTTCAGCTGGACCC
TCTGCCCATGACTCTCACCCTGGCGTTTGCTTCTCAGCTCAAGAAGACATCTCTCAGTCTCACG
CCAGATGTCCCAGAGGCAGACCTTTCTGAAGTGGACCCCAAGCTCGTGTCTAATCTGATGCCCT
TTCAGAGAGCTGGAGTCAATTTTGCCATAGCGAAAGGAGGCCGCCTGCTGCTCGCTGACGACAT
GGGCCTGGGGAAGACCATCCAAGCCATCTGCATCGCAGCCTTTTACCAGAAGGAGTGGCCGCTC
CTGGTGGTGGTGCCATCCTCCGTGCGCTTCACCTGGGAGCAGGCCTTCCTTCGGTGGCTGCCAT
CTCTGAGCCCAGATTGCATCAACGTCGTGGTGACTGGGAAGGACCGCCTGACAGCTGGCCTGAT
CAACATTGTCAGCTTTGACCTTCTTAGCAAGTTGGAAAAACAGCTAAAAACCCCTTTTAAAGTT
GTCATCATTGATGAATCTCACTTCCTCAAAAACAGTAGGACTGCCCGCTGTCGAGCAGCTATGC
CGGTCCTAAAGGTTGCCAAGAGGGTGATCCTGTTGTCGGGCACACCAGCCATGTCCCGGCCCGC
AGAGCTCTACACGCAGATCATAGCAGTCAAGCCAACTTTCTTCCCCCAGTTTCATGCCTTTGGA
CTTCGCTACTGTGATGCCAAACGGATGCCTTGGGGGTGGGACTACTCAGGTTCCTCCAACCTGG
GAGAGCTGAAGCTCCTGCTGGAGGAAGCAGTCATGCTGCGGCGCCTCAAGTCCGACGTCCTTTC
CCAGCTGCCTGCCAAGCAGCGCAAGATAGTGGTGATTGCCCCAGGACGGATCAATGCCAGGACC
AGAGCTGCCCTGGATGCTGCAGCCAAGGAAATGACCACCAAGGACAAAACTAAACAGCAGCAGA
AAGATGCCCTCATTCTCTTCTTCAACAGAACAGCTGAAGCTAAAATCCCGTCTGTCATTGAATA
TATCTTGGACCTACTGGAAAGTGGAAGAGAGAAGTTTTTAGTATTTGCACACCATAAGGTGGTC
CTGGACGCAATTACGCAAGAGCTTGAGAGAAAGCACGTGCAGCACATCCGCATCGATGGCTCCA
CCTCATCAGCTGAGCGGGAGGACCTGTGCCAGCAGTTCCAACTGTCGGAGAGGCATGCCGTGGC
CGTGCTGTCCATCACCGCTGCCAATATGGGCCTCACCTTCTCCTCGGCTGACCTGGTGGTGTTT
GCTGAGCTGTTTTGGAACCCAGGGGTGCTGATCCAGGCTGAGGACCGCGTGCACCGCATTGGAC
AGACCAGCTCCGTGGGCATTCACTACCTCGTGGCAAAGGGCACAGCTGATGACTACCTTTGGCC
CCTGATTCAAGAGAAGATTAAAGTTCTGGCGGAAGCCGGGCTTTCTGAGACCAATTTTTCAGAA
ATGACAGAATCCACTGATTACCTCTACAAGGACCCAAAGCAGCAGAAGATCTACGACCTATTCC
AGAAGTCCTTTGAGAAAGAAGGAAGTGATATGGAGCTCCTGGAAGCAGCAGAGTCCTTTGACCC
AGGAAGTGCTTCAGGAACATCTGGAAGTAGTTCCCAGAACATGGGAGACACCCTGGATGAAAGC
TCATTGACAGCCAGTCCACAGAAGAAAAGGAGATTTGAATTTTTTGATAACTGGGACAGCTTTA
CGTCTCCCCTGTAAAAGGGGCAAAAAGAAAAAATAAAAAGCATTTTAAAATCATGGAATTGAAA
TAAAATAATGTATTTTGTTTTAAAA

hide sequence

RefSeq Acc Id:

XM_008971919 ⟹ XP_008970167

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	13	119,040,363 - 119,111,253 (+)	NCBI
NHGRI_mPanPan1	2B	119,055,327 - 119,126,245 (+)	NCBI
Mhudiblu_PPA_v0	2B	103,672,941 - 103,743,802 (+)	NCBI
PanPan1.1	2B	222,276,353 - 222,347,258 (+)	NCBI

Sequence:

show sequence

AGCGGTGGCCGAGCCCTTCAGGCCTGGCCGCTACAATAAGGCTGGCGAACTCGCAGCGCTTGAA
TACCCGTGGCCTAACCGTCCACTCGGAAGACCGGTCCTGCTCGGGAGGCTCTGCAGTCGCGCCT
GGGGTCAGGGCCGGGGGCGAATGCGGCTCGCGTTCTAGGCCTCCCTGGGTGAGAAAGTGGTAGA
CTGGCAGGAAGGCGGCGGAGGCGGACGAGACCAATGCCAGCCTGGAGGAGGAAGTGGGCCAATG
GGAAGGGTTGGAAAAAGACTATTTTAGCAAGTGTCACGCCATGCTTTTGCCAACTTTCCAATTA
AAGGTTGACATTCCTGCATAAGCATTTCTCTGTGAAAATGTCCTTGCCTCTTACAGAGGAGCAG
AGGAAAAAGATTGAAGAGAATCGACAAAAGGCTCTGGCCCGCAGAGCTGAGAAGTTATTGGCAG
AACAGCATCAGAGGACTAGCTCGGGCATCTCCATTGCTGGCAACCCATTCCAGGCCAAGCAAGG
CCCATCCCAAAATTTCCCAAGGGAGTCTTGTAAGCCAGTGAGCCATGGTGTCATTTTCAAGCAA
CAGAATCTCAGTAGCTCATCTAATGCTGACCAAAGACCTCATGATTCCCACAGTTTTCAGGCAA
AGGGAATATGGAAAAAGCCAGAAGAAATGCCCACAGCCTGCCCAGGCCACAGTCCACGTAGTCA
AATGGCTCTCACTGGAATCTCTCCTCCCTTGGCACAAAGTCCTCCAGAGGTCCCCAAACAACAG
CTCTTGAGTTATGAGTTAGGTCAAGGTCATGCTCAGGCTTCACCTGAGATCAGGTTCACACCCT
TTGCTAACCCAACTCATAAGCCTCTGGCCAAACCAAAGAGTTCCCAAGAGACACCAGCTCATTC
CTCTGGACAGCCTCCCAGGGATGCTAAGTTAGAGGCCAAGACAGCAAAAGCCTCCCCTTCGGGG
CAGAACATTTCTTACATCCATTCTAGCTCAGAGAGTGTAACGCCCAGGACAGAAGGAAGACTCC
AACAGAAGTCAGGGTCCTCAGTCCAAAAAGGAGTGAACTCTCAGAAGGGAAAGTGCGTAAGGAA
CGGCGATCGTTTCCAGGTGTTGATTGGGTACAATGCGGAACTCATTGCAGTGTTTAAGACCCTG
CCCAGCAAGAATTATGATCCTGACACCAAGACGTGGAACTTCAGCATGAATGACTATAGTGCCT
TGATGAAAGCAGCCCAGAGCCTCCCCACGGTCAACCTGCAGCCTCTGGAATGGGCCTATGGCAG
CAGCGAGTCACCCTCCACCAGCAGTGAGGGACAGGCCGGCCTTCCATCAGCTCCATCCCTTTCG
TTTGTCAAAGGGCGATGCATGCTCATCTCCAGGGCCTACTTCGAGGCAGACATCAGTTATTCAC
AGGACCTTATTGCGCTTTTTAAACAGATGGATTCCAGAAGATATGATGTCAAGACCAGGAAGTG
GAGCTTTCTCTTGGAAGAGCACAGTAAACTAATTGCAAAGGTGCGCTGCCTCCCACAAGTTCAG
CTGGACCCTCTGCCCATGACTCTCACCCTGGCGTTTGCTTCTCAGCTCAAGAAGACATCTCTCA
GTCTCACGCCAGATGTCCCAGAGGCAGACCTTTCTGAAGTGGACCCCAAGCTCGTGTCTAATCT
GATGCCCTTTCAGAGAGCTGGAGTCAATTTTGCCATAGCGAAAGGAGGCCGCCTGCTGCTCGCT
GACGACATGGGCCTGGGGAAGACCATCCAAGCCATCTGCATCGCAGCCTTTTACCAGAAGGAGT
GGCCGCTCCTGGTGGTGGTGCCATCCTCCGTGCGCTTCACCTGGGAGCAGGCCTTCCTTCGGTG
GCTGCCATCTCTGAGCCCAGATTGCATCAACGTCGTGGTGACTGGGAAGGACCGCCTGACAGCT
GGCCTGATCAACATTGTCAGCTTTGACCTTCTTAGCAAGTTGGAAAAACAGCTAAAAACCCCTT
TTAAAGTTGTCATCATTGATGAATCTCACTTCCTCAAAAACAGTAGGACTGCCCGCTGTCGAGC
AGCTATGCCGGTCCTAAAGGTTGCCAAGAGGGTGATCCTGTTGTCGGGCACACCAGCCATGTCC
CGGCCCGCAGAGCTCTACACGCAGATCATAGCAGTCAAGCCAACTTTCTTCCCCCAGTTTCATG
CCTTTGGACTTCGCTACTGTGATGCCAAACGGATGCCTTGGGGGTGGGACTACTCAGGTTCCTC
CAACCTGGGAGAGCTGAAGCTCCTGCTGGAGGAAGCAGTCATGCTGCGGCGCCTCAAGTCCGAC
GTCCTTTCCCAGCTGCCTGCCAAGCAGCGCAAGATAGTGGTGATTGCCCCAGGACGGATCAATG
CCAGGACCAGAGCTGCCCTGGATGCTGCAGCCAAGGAAATGACCACCAAGGACAAAACTAAACA
GCAGCAGAAAGATGCCCTCATTCTCTTCTTCAACAGAACAGCTGAAGCTAAAATCCCGTCTGTC
ATTGAATATATCTTGGACCTACTGGAAAGTGGAAGAGAGAAGTTTTTAGTATTTGCACACCATA
AGGTGGTCCTGGACGCAATTACGCAAGAGCTTGAGAGAAAGCACGTGCAGCACATCCGCATCGA
TGGCTCCACCTCATCAGCTGAGCGGGAGGACCTGTGCCAGCAGTTCCAACTGTCGGAGAGGCAT
GCCGTGGCCGTGCTGTCCATCACCGCTGCCAATATGGGCCTCACCTTCTCCTCGGCTGACCTGG
TGGTGTTTGCTGAGCTGTTTTGGAACCCAGGGGTGCTGATCCAGGCTGAGGACCGCGTGCACCG
CATTGGACAGACCAGCTCCGTGGGCATTCACTACCTCGTGGCAAAGGGCACAGCTGATGACTAC
CTTTGGCCCCTGATTCAAGAGAAGATTAAAGTTCTGGCGGAAGCCGGGCTTTCTGAGACCAATT
TTTCAGAAATGACAGAATCCACTGATTACCTCTACAAGGACCCAAAGCAGCAGAAGATCTACGA
CCTATTCCAGAAGTCCTTTGAGAAAGAAGGAAGTGATATGGAGCTCCTGGAAGCAGCAGAGTCC
TTTGACCCAGGAAGTGCTTCAGGAACATCTGGAAGTAGTTCCCAGAACATGGGAGACACCCTGG
ATGAAAGCTCATTGACAGCCAGTCCACAGAAGAAAAGGAGATTTGAATTTTTTGATAACTGGGA
CAGCTTTACGTCTCCCCTGTAAAAGGGGCAAAAAGAAAAAATAAAAAGCATTTTAAAATCATGG
AATTGAAATAAAATAATGTATTTTGTTTTAAAA

hide sequence

RefSeq Acc Id:

XR_004670316

Type:

NON-CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	13	119,040,391 - 119,106,474 (+)	NCBI
NHGRI_mPanPan1	2B	119,055,347 - 119,121,437 (+)	NCBI
Mhudiblu_PPA_v0	2B	103,672,934 - 103,739,022 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_003818635	(Get FASTA)	NCBI Sequence Viewer
	XP_003818636	(Get FASTA)	NCBI Sequence Viewer
	XP_008970166	(Get FASTA)	NCBI Sequence Viewer
	XP_008970167	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000039618
	ENSPPAP00000039618.1
	ENSPPAP00000039621
	ENSPPAP00000039621.1

RefSeq Acc Id:

XP_003818635 ⟸ XM_003818587

- UniProtKB:

A0A2R9CF28 (UniProtKB/TrEMBL), A0A2R9CCG2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSLPLTEEQRKKIEENRQKALARRAEKLLAEQHQRTSSGISIAGNPFQAKQGPSQNFPRESCKP
VSHGVIFKQQNLSSSSNADQRPHDSHSFQAKGIWKKPEEMPTACPGHSPRSQMALTGISPPLAQ
SPPEVPKQQLLSYELGQGHAQASPEIRFTPFANPTHKPLAKPKSSQETPAHSSGQPPRDAKLEA
KTAKASPSGQNISYIHSSSESVTPRTEGRLQQKSGSSVQKGVNSQKGKCVRNGDRFQVLIGYNA
ELIAVFKTLPSKNYDPDTKTWNFSMNDYSALMKAAQSLPTVNLQPLEWAYGSSESPSTSSEGQA
GLPSAPSLSFVKGRCMLISRAYFEADISYSQDLIALFKQMDSRRYDVKTRKWSFLLEEHSKLIA
KVRCLPQVQLDPLPMTLTLAFASQLKKTSLSLTPDVPEADLSEVDPKLVSNLMPFQRAGVNFAI
AKGGRLLLADDMGLGKTIQAICIAAFYQKEWPLLVVVPSSVRFTWEQAFLRWLPSLSPDCINVV
VTGKDRLTAGLINIVSFDLLSKLEKQLKTPFKVVIIDESHFLKNSRTARCRAAMPVLKVAKRVI
LLSGTPAMSRPAELYTQIIAVKPTFFPQFHAFGLRYCDAKRMPWGWDYSGSSNLGELKLLLEEA
VMLRRLKSDVLSQLPAKQRKIVVIAPGRINARTRAALDAAAKEMTTKDKTKQQQKDALILFFNR
TAEAKIPSVIEYILDLLESGREKFLVFAHHKVVLDAITQELERKHVQHIRIDGSTSSAEREDLC
QQFQLSERHAVAVLSITAANMGLTFSSADLVVFAELFWNPGVLIQAEDRVHRIGQTSSVGIHYL
VAKGTADDYLWPLIQEKIKVLAEAGLSETNFSEMTESTDYLYKDPKQQKIYDLFQKSFEKEGSD
MELLEAAESFDPGSASGTSGSSSQNMGDTLDESSLTASPQKKRRFEFFDNWDSFTSPL

hide sequence

RefSeq Acc Id:

XP_008970166 ⟸ XM_008971918

- UniProtKB:

A0A2R9CF28 (UniProtKB/TrEMBL), A0A2R9CCG2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSLPLTEEQRKKIEENRQKALARRAEKLLAEQHQRTSSGISIAGNPFQAKQGPSQNFPRESCKP
VSHGVIFKQQNLSSSSNADQRPHDSHSFQAKGIWKKPEEMPTACPGHSPRSQMALTGISPPLAQ
SPPEVPKQQLLSYELGQGHAQASPEIRFTPFANPTHKPLAKPKSSQETPAHSSGQPPRDAKLEA
KTAKASPSGQNISYIHSSSESVTPRTEGRLQQKSGSSVQKGVNSQKGKCVRNGDRFQVLIGYNA
ELIAVFKTLPSKNYDPDTKTWNFSMNDYSALMKAAQSLPTVNLQPLEWAYGSSESPSTSSEGQA
GLPSAPSLSFVKGRCMLISRAYFEADISYSQDLIALFKQMDSRRYDVKTRKWSFLLEEHSKLIA
KVRCLPQVQLDPLPMTLTLAFASQLKKTSLSLTPDVPEADLSEVDPKLVSNLMPFQRAGVNFAI
AKGGRLLLADDMGLGKTIQAICIAAFYQKEWPLLVVVPSSVRFTWEQAFLRWLPSLSPDCINVV
VTGKDRLTAGLINIVSFDLLSKLEKQLKTPFKVVIIDESHFLKNSRTARCRAAMPVLKVAKRVI
LLSGTPAMSRPAELYTQIIAVKPTFFPQFHAFGLRYCDAKRMPWGWDYSGSSNLGELKLLLEEA
VMLRRLKSDVLSQLPAKQRKIVVIAPGRINARTRAALDAAAKEMTTKDKTKQQQKDALILFFNR
TAEAKIPSVIEYILDLLESGREKFLVFAHHKVVLDAITQELERKHVQHIRIDGSTSSAEREDLC
QQFQLSERHAVAVLSITAANMGLTFSSADLVVFAELFWNPGVLIQAEDRVHRIGQTSSVGIHYL
VAKGTADDYLWPLIQEKIKVLAEAGLSETNFSEMTESTDYLYKDPKQQKIYDLFQKSFEKEGSD
MELLEAAESFDPGSASGTSGSSSQNMGDTLDESSLTASPQKKRRFEFFDNWDSFTSPL

hide sequence

RefSeq Acc Id:

XP_008970167 ⟸ XM_008971919

- UniProtKB:

A0A2R9CF28 (UniProtKB/TrEMBL), A0A2R9CCG2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSLPLTEEQRKKIEENRQKALARRAEKLLAEQHQRTSSGISIAGNPFQAKQGPSQNFPRESCKP
VSHGVIFKQQNLSSSSNADQRPHDSHSFQAKGIWKKPEEMPTACPGHSPRSQMALTGISPPLAQ
SPPEVPKQQLLSYELGQGHAQASPEIRFTPFANPTHKPLAKPKSSQETPAHSSGQPPRDAKLEA
KTAKASPSGQNISYIHSSSESVTPRTEGRLQQKSGSSVQKGVNSQKGKCVRNGDRFQVLIGYNA
ELIAVFKTLPSKNYDPDTKTWNFSMNDYSALMKAAQSLPTVNLQPLEWAYGSSESPSTSSEGQA
GLPSAPSLSFVKGRCMLISRAYFEADISYSQDLIALFKQMDSRRYDVKTRKWSFLLEEHSKLIA
KVRCLPQVQLDPLPMTLTLAFASQLKKTSLSLTPDVPEADLSEVDPKLVSNLMPFQRAGVNFAI
AKGGRLLLADDMGLGKTIQAICIAAFYQKEWPLLVVVPSSVRFTWEQAFLRWLPSLSPDCINVV
VTGKDRLTAGLINIVSFDLLSKLEKQLKTPFKVVIIDESHFLKNSRTARCRAAMPVLKVAKRVI
LLSGTPAMSRPAELYTQIIAVKPTFFPQFHAFGLRYCDAKRMPWGWDYSGSSNLGELKLLLEEA
VMLRRLKSDVLSQLPAKQRKIVVIAPGRINARTRAALDAAAKEMTTKDKTKQQQKDALILFFNR
TAEAKIPSVIEYILDLLESGREKFLVFAHHKVVLDAITQELERKHVQHIRIDGSTSSAEREDLC
QQFQLSERHAVAVLSITAANMGLTFSSADLVVFAELFWNPGVLIQAEDRVHRIGQTSSVGIHYL
VAKGTADDYLWPLIQEKIKVLAEAGLSETNFSEMTESTDYLYKDPKQQKIYDLFQKSFEKEGSD
MELLEAAESFDPGSASGTSGSSSQNMGDTLDESSLTASPQKKRRFEFFDNWDSFTSPL

hide sequence

RefSeq Acc Id:

XP_003818636 ⟸ XM_003818588

- UniProtKB:

A0A2R9CF28 (UniProtKB/TrEMBL), A0A2R9CCG2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSLPLTEEQRKKIEENRQKALARRAEKLLAEQHQRTSSGISIAGNPFQAKQGPSQNFPRESCKP
VSHGVIFKQQNLSSSSNADQRPHDSHSFQAKGIWKKPEEMPTACPGHSPRSQMALTGISPPLAQ
SPPEVPKQQLLSYELGQGHAQASPEIRFTPFANPTHKPLAKPKSSQETPAHSSGQPPRDAKLEA
KTAKASPSGQNISYIHSSSESVTPRTEGRLQQKSGSSVQKGVNSQKGKCVRNGDRFQVLIGYNA
ELIAVFKTLPSKNYDPDTKTWNFSMNDYSALMKAAQSLPTVNLQPLEWAYGSSESPSTSSEGQA
GLPSAPSLSFVKGRCMLISRAYFEADISYSQDLIALFKQMDSRRYDVKTRKWSFLLEEHSKLIA
KVRCLPQVQLDPLPMTLTLAFASQLKKTSLSLTPDVPEADLSEVDPKLVSNLMPFQRAGVNFAI
AKGGRLLLADDMGLGKTIQAICIAAFYQKEWPLLVVVPSSVRFTWEQAFLRWLPSLSPDCINVV
VTGKDRLTAGLINIVSFDLLSKLEKQLKTPFKVVIIDESHFLKNSRTARCRAAMPVLKVAKRVI
LLSGTPAMSRPAELYTQIIAVKPTFFPQFHAFGLRYCDAKRMPWGWDYSGSSNLGELKLLLEEA
VMLRRLKSDVLSQLPAKQRKIVVIAPGRINARTRAALDAAAKEMTTKDKTKQQQKDALILFFNR
TAEAKIPSVIEYILDLLESGREKFLVFAHHKVVLDAITQELERKHVQHIRIDGSTSSAEREDLC
QQFQLSERHAVAVLSITAANMGLTFSSADLVVFAELFWNPGVLIQAEDRVHRIGQTSSVGIHYL
VAKGTADDYLWPLIQEKIKVLAEAGLSETNFSEMTESTDYLYKDPKQQKIYDLFQKSFEKEGSD
MELLEAAESFDPGSASGTSGSSSQNMGDTLDESSLTASPQKKRRFEFFDNWDSFTSPL

hide sequence

Ensembl Acc Id:

ENSPPAP00000039618 ⟸ ENSPPAT00000062529

Ensembl Acc Id:

ENSPPAP00000039621 ⟸ ENSPPAT00000062532

Protein Domains

HARP Helicase ATP-binding Helicase C-terminal

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000042500	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000062529.1	UniProtKB/TrEMBL
	ENSPPAT00000062532.1	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.10810	UniProtKB/TrEMBL
	3.40.50.300	UniProtKB/TrEMBL
InterPro	HARP_dom	UniProtKB/TrEMBL
	Helicase_ATP-bd	UniProtKB/TrEMBL
	Helicase_C	UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/TrEMBL
	SNF2-like_sf	UniProtKB/TrEMBL
	SNF2/RAD54-like_C	UniProtKB/TrEMBL
	SNF2_N	UniProtKB/TrEMBL
KEGG Report	pps:100971581	UniProtKB/TrEMBL
NCBI Gene	SMARCAL1	ENTREZGENE
PANTHER	DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER	UniProtKB/TrEMBL
	PTHR45766:SF3	UniProtKB/TrEMBL
Pfam	HARP	UniProtKB/TrEMBL
	Helicase_C	UniProtKB/TrEMBL
	SNF2_N	UniProtKB/TrEMBL
PROSITE	HARP	UniProtKB/TrEMBL
	HELICASE_ATP_BIND_1	UniProtKB/TrEMBL
	HELICASE_CTER	UniProtKB/TrEMBL
SMART	DEXDc	UniProtKB/TrEMBL
	HELICc	UniProtKB/TrEMBL
Superfamily-SCOP	SSF52540	UniProtKB/TrEMBL
UniProt	A0A2R9CCG2	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R9CF28	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2024-09-25	SMARCAL1	SNF2 related chromatin remodeling annealing helicase 1	SMARCAL1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM