CLEC4A (C-type lectin domain family 4 member A) - Rat Genome Database

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Gene: CLEC4A (C-type lectin domain family 4 member A) Pan paniscus
Analyze
Symbol: CLEC4A
Name: C-type lectin domain family 4 member A
RGD ID: 11943466
Description: ENCODES a protein that exhibits calcium ion binding (inferred); carbohydrate binding (inferred); D-mannose binding (inferred); INVOLVED IN antigen processing and presentation of exogenous peptide antigen via MHC class I (inferred); CD8-positive, alpha-beta T cell activation (inferred); negative regulation of cytokine production (inferred); ASSOCIATED WITH allergic disease (ortholog); developmental and epileptic encephalopathy 21 (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21013,678,544 - 13,694,497 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11213,675,663 - 13,691,258 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0128,242,240 - 8,257,860 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1128,285,174 - 8,300,029 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl128,285,174 - 8,300,029 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
CLEC4A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21013,678,544 - 13,694,497 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11213,675,663 - 13,691,258 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0128,242,240 - 8,257,860 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1128,285,174 - 8,300,029 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl128,285,174 - 8,300,029 (+)Ensemblpanpan1.1panPan2
CLEC4A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38128,102,907 - 8,138,607 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl128,123,617 - 8,138,607 (+)EnsemblGRCh38hg38GRCh38
GRCh37128,276,213 - 8,291,203 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36128,167,495 - 8,182,470 (+)NCBINCBI36Build 36hg18NCBI36
Build 34128,167,494 - 8,182,470NCBI
Celera129,853,291 - 9,868,264 (+)NCBICelera
Cytogenetic Map12p13.31NCBI
HuRef128,087,926 - 8,102,887 (+)NCBIHuRef
CHM1_1128,275,451 - 8,290,436 (+)NCBICHM1_1
T2T-CHM13v2.0128,116,443 - 8,152,211 (+)NCBIT2T-CHM13v2.0
Clec4a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396122,898,807 - 122,911,578 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6122,898,807 - 122,911,578 (+)EnsemblGRCm39 Ensembl
GRCm386122,921,848 - 122,934,619 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6122,921,848 - 122,934,619 (+)EnsemblGRCm38mm10GRCm38
MGSCv376122,871,876 - 122,884,637 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366122,887,477 - 122,900,238 (+)NCBIMGSCv36mm8
Celera6124,720,328 - 124,733,089 (+)NCBICelera
Cytogenetic Map6F2NCBI
cM Map658.01NCBI
Clec4a3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84157,885,899 - 157,896,728 (+)NCBIGRCr8
mRatBN7.24156,214,030 - 156,224,818 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4156,214,718 - 156,224,817 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4162,481,963 - 162,491,406 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04158,265,186 - 158,274,625 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04156,910,273 - 156,919,712 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04155,913,366 - 155,923,079 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4155,913,366 - 155,923,079 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04222,933,145 - 222,943,978 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44159,464,410 - 159,474,023 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14159,709,345 - 159,718,959 (+)NCBI
Celera4145,032,051 - 145,041,552 (+)NCBICelera
Cytogenetic Map4q42NCBI
CLEC4A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12737,493,740 - 37,510,276 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha279,105,685 - 9,122,242 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02737,847,699 - 37,864,274 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12737,722,356 - 37,738,913 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02737,763,894 - 37,780,460 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0278,592,389 - 8,609,003 (-)NCBIUU_Cfam_GSD_1.0
LOC101965910
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494599,260,992 - 99,284,639 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936892454,036 - 467,957 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC110258709
(Sus scrofa - pig)
No map positions available.
CLEC4A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1118,190,312 - 8,207,451 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl118,190,370 - 8,207,438 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666089289,695 - 304,616 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003811801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSPPAT00000052497   ⟹   ENSPPAP00000029647
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl128,285,174 - 8,300,029 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000052500   ⟹   ENSPPAP00000029650
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl128,285,174 - 8,300,029 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000052502   ⟹   ENSPPAP00000029652
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl128,285,174 - 8,300,029 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000052504   ⟹   ENSPPAP00000029654
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl128,285,174 - 8,300,029 (+)Ensembl
RefSeq Acc Id: XM_003811801   ⟹   XP_003811849
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21013,678,544 - 13,694,497 (+)NCBI
NHGRI_mPanPan11213,675,663 - 13,691,258 (+)NCBI
Mhudiblu_PPA_v0128,242,240 - 8,257,860 (+)NCBI
PanPan1.1128,285,174 - 8,300,029 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003811849 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000029647.1
  ENSPPAP00000029650.1
  ENSPPAP00000029652.1
  ENSPPAP00000029654.1
RefSeq Acc Id: XP_003811849   ⟸   XM_003811801
- UniProtKB: A0A2R9BMK5 (UniProtKB/TrEMBL),   A0A2R9BIZ2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSPPAP00000029647   ⟸   ENSPPAT00000052497
Ensembl Acc Id: ENSPPAP00000029654   ⟸   ENSPPAT00000052504
Ensembl Acc Id: ENSPPAP00000029652   ⟸   ENSPPAT00000052502
Ensembl Acc Id: ENSPPAP00000029650   ⟸   ENSPPAT00000052500
Protein Domains
C-type lectin


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000037837 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000052497.1 UniProtKB/TrEMBL
  ENSPPAT00000052500.1 UniProtKB/TrEMBL
  ENSPPAT00000052502.1 UniProtKB/TrEMBL
  ENSPPAT00000052504.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.100.10 UniProtKB/TrEMBL
InterPro C-type_lectin-like UniProtKB/TrEMBL
  C-type_lectin-like/link_sf UniProtKB/TrEMBL
  C-type_lectin/snaclec_domain UniProtKB/TrEMBL
  C-type_lectin_CS UniProtKB/TrEMBL
  C-type_Lectin_Receptor_IMM UniProtKB/TrEMBL
  CD209-like_CTLD UniProtKB/TrEMBL
  CTDL_fold UniProtKB/TrEMBL
KEGG Report pps:100991352 UniProtKB/TrEMBL
NCBI Gene CLEC4A ENTREZGENE
PANTHER CD209 ANTIGEN-LIKE PROTEIN C-LIKE UniProtKB/TrEMBL
  KILLER CELL LECTIN-LIKE RECEPTOR SUBFAMILY F MEMBER 2 UniProtKB/TrEMBL
  MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED UniProtKB/TrEMBL
Pfam Lectin_C UniProtKB/TrEMBL
PROSITE C_TYPE_LECTIN_1 UniProtKB/TrEMBL
  C_TYPE_LECTIN_2 UniProtKB/TrEMBL
SMART CLECT UniProtKB/TrEMBL
Superfamily-SCOP SSF56436 UniProtKB/TrEMBL
UniProt A0A2R9BIZ2 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9BJ05_PANPA UniProtKB/TrEMBL
  A0A2R9BMK5 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9BML1_PANPA UniProtKB/TrEMBL