HSPB2 (heat shock protein family B (small) member 2) - Rat Genome Database

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Gene: HSPB2 (heat shock protein family B (small) member 2) Pan paniscus
Analyze
Symbol: HSPB2
Name: heat shock protein family B (small) member 2
RGD ID: 11938943
Description: ENCODES a protein that exhibits structural constituent of eye lens (inferred); unfolded protein binding (inferred); INVOLVED IN somatic muscle development (ortholog); ASSOCIATED WITH ataxia telangiectasia (ortholog); BH4-deficient hyperphenylalaninemia A (ortholog); Carney-Stratakis syndrome (ortholog); FOUND IN cytoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: heat shock protein beta-2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29112,663,315 - 112,664,617 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111113,756,720 - 113,758,896 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011106,798,674 - 106,800,861 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111110,642,722 - 110,644,893 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11110,642,933 - 110,644,893 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
HSPB2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29112,663,315 - 112,664,617 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111113,756,720 - 113,758,896 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011106,798,674 - 106,800,861 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111110,642,722 - 110,644,893 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11110,642,933 - 110,644,893 (+)Ensemblpanpan1.1panPan2
HSPB2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811111,912,734 - 111,914,093 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11111,912,734 - 111,914,093 (+)EnsemblGRCh38hg38GRCh38
GRCh3711111,783,458 - 111,784,817 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611111,288,709 - 111,290,027 (+)NCBINCBI36Build 36hg18NCBI36
Build 3411111,288,708 - 111,290,027NCBI
Celera11108,936,668 - 108,938,025 (+)NCBICelera
Cytogenetic Map11q23.1NCBI
HuRef11107,707,366 - 107,708,777 (+)NCBIHuRef
CHM1_111111,666,540 - 111,667,897 (+)NCBICHM1_1
T2T-CHM13v2.011111,922,978 - 111,924,337 (+)NCBIT2T-CHM13v2.0
Hspb2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39950,662,372 - 50,663,654 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl950,662,378 - 50,663,654 (-)EnsemblGRCm39 Ensembl
GRCm38950,751,072 - 50,752,354 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl950,751,078 - 50,752,354 (-)EnsemblGRCm38mm10GRCm38
MGSCv37950,559,177 - 50,560,459 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36950,503,308 - 50,504,523 (-)NCBIMGSCv36mm8
Celera948,038,238 - 48,039,519 (-)NCBICelera
Cytogenetic Map9A5.3NCBI
cM Map927.75NCBI
Hspb2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8859,989,640 - 59,991,215 (-)NCBIGRCr8
mRatBN7.2851,093,267 - 51,094,528 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl851,081,342 - 51,094,533 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx856,599,664 - 56,600,635 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0854,878,591 - 54,879,562 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0852,742,846 - 52,743,817 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0855,176,648 - 55,178,227 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl855,176,847 - 55,177,818 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0853,773,887 - 53,775,411 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4854,105,807 - 54,106,778 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1854,124,860 - 54,125,832 (-)NCBI
Celera850,641,048 - 50,642,019 (-)NCBICelera
Cytogenetic Map8q23NCBI
Hspb2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541213,628,098 - 13,631,727 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541213,628,098 - 13,631,575 (+)NCBIChiLan1.0ChiLan1.0
HSPB2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1521,179,875 - 21,181,096 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl521,179,881 - 21,181,017 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha521,102,123 - 21,103,347 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0521,202,794 - 21,204,021 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl521,195,399 - 21,203,924 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1521,264,097 - 21,265,320 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0521,164,562 - 21,165,778 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0521,213,340 - 21,214,564 (-)NCBIUU_Cfam_GSD_1.0
Hspb2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494794,173,404 - 94,174,785 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366122,519,697 - 2,532,195 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366122,530,827 - 2,532,148 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HSPB2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11103,262,807 - 103,264,150 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1103,262,897 - 103,263,952 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604322,716,678 - 22,718,513 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hspb2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247847,079,910 - 7,081,606 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247847,079,923 - 7,081,950 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003805456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSPPAT00000063854   ⟹   ENSPPAP00000040933
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl11110,642,933 - 110,644,893 (+)Ensembl
RefSeq Acc Id: XM_003805456   ⟹   XP_003805504
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v29112,663,315 - 112,664,617 (+)NCBI
NHGRI_mPanPan111113,756,720 - 113,758,896 (+)NCBI
Mhudiblu_PPA_v011106,798,674 - 106,800,861 (+)NCBI
PanPan1.111110,642,722 - 110,644,893 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003805504 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000040933.1
RefSeq Acc Id: XP_003805504   ⟸   XM_003805456
- UniProtKB: A0A2R9CIR8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSPPAP00000040933   ⟸   ENSPPAT00000063854
Protein Domains
sHSP


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000043092 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000063854.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.790 UniProtKB/TrEMBL
InterPro A-crystallin/Hsp20_dom UniProtKB/TrEMBL
  Alpha-crystallin/sHSP_animal UniProtKB/TrEMBL
  Alpha-crystallin_N UniProtKB/TrEMBL
  HSP20-like_chaperone UniProtKB/TrEMBL
NCBI Gene HSPB2 ENTREZGENE
PANTHER HEAT SHOCK PROTEIN BETA-2 UniProtKB/TrEMBL
  PTHR45640 UniProtKB/TrEMBL
Pfam Crystallin UniProtKB/TrEMBL
  HSP20 UniProtKB/TrEMBL
PRINTS ACRYSTALLIN UniProtKB/TrEMBL
PROSITE SHSP UniProtKB/TrEMBL
Superfamily-SCOP SSF49764 UniProtKB/TrEMBL
UniProt A0A2R9CIR8 ENTREZGENE, UniProtKB/TrEMBL