SLC25A25 (solute carrier family 25 member 25) - Rat Genome Database

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Gene: SLC25A25 (solute carrier family 25 member 25) Pan paniscus
Analyze
Symbol: SLC25A25
Name: solute carrier family 25 member 25
RGD ID: 11916391
Description: ENCODES a protein that exhibits antiporter activity (inferred); ATP:phosphate antiporter activity (inferred); calcium ion binding (inferred); INVOLVED IN adipose tissue development (inferred); ATP metabolic process (inferred); ATP transport (inferred); ASSOCIATED WITH autism spectrum disorder (ortholog); congenital disorder of glycosylation Iu (ortholog); developmental and epileptic encephalopathy (ortholog); FOUND IN membrane (inferred); mitochondrial inner membrane (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: calcium-binding mitochondrial carrier protein SCaMC-2; mitochondrial adenyl nucleotide antiporter SLC25A25
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21111,243,799 - 11,284,673 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1911,246,147 - 11,287,021 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0999,188,906 - 99,229,771 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19127,859,948 - 127,900,922 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9127,859,948 - 127,900,922 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SLC25A25
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21111,243,799 - 11,284,673 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1911,246,147 - 11,287,021 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0999,188,906 - 99,229,771 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19127,859,948 - 127,900,922 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9127,859,948 - 127,900,922 (+)Ensemblpanpan1.1panPan2
SLC25A25
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389128,068,232 - 128,109,245 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9128,068,201 - 128,109,245 (+)EnsemblGRCh38hg38GRCh38
GRCh379130,830,511 - 130,871,524 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369129,870,300 - 129,911,345 (+)NCBINCBI36Build 36hg18NCBI36
Build 349127,940,370 - 127,951,078NCBI
Celera9101,482,501 - 101,523,452 (+)NCBICelera
Cytogenetic Map9q34.11NCBI
HuRef9100,445,708 - 100,486,206 (+)NCBIHuRef
CHM1_19130,982,710 - 131,023,583 (+)NCBICHM1_1
T2T-CHM13v2.09140,276,208 - 140,317,210 (+)NCBIT2T-CHM13v2.0
Slc25a25
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39232,304,499 - 32,341,482 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl232,304,499 - 32,341,457 (-)EnsemblGRCm39 Ensembl
GRCm38232,414,487 - 32,451,470 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl232,414,487 - 32,451,445 (-)EnsemblGRCm38mm10GRCm38
MGSCv37232,270,007 - 32,306,990 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36232,236,489 - 32,273,431 (-)NCBIMGSCv36mm8
Celera232,120,151 - 32,157,130 (-)NCBICelera
Cytogenetic Map2BNCBI
cM Map222.09NCBI
Slc25a25
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8336,106,448 - 36,139,812 (-)NCBIGRCr8
mRatBN7.2315,708,702 - 15,742,195 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl315,708,703 - 15,742,216 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx318,777,546 - 18,787,673 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0327,362,543 - 27,372,674 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0325,613,291 - 25,623,413 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0311,442,396 - 11,476,186 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl311,442,397 - 11,452,529 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0316,791,266 - 16,825,049 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4311,539,415 - 11,549,538 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1311,435,787 - 11,445,910 (-)NCBI
Celera310,451,575 - 10,461,792 (-)NCBICelera
Cytogenetic Map3p11NCBI
Slc25a25
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955419618,979 - 656,189 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955419621,445 - 656,172 (-)NCBIChiLan1.0ChiLan1.0
SLC25A25
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1955,358,348 - 55,394,624 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl955,360,043 - 55,394,519 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha954,553,071 - 54,588,912 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0956,285,169 - 56,316,835 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1955,040,512 - 55,076,587 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0955,355,242 - 55,391,319 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0955,446,944 - 55,482,811 (-)NCBIUU_Cfam_GSD_1.0
Slc25a25
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947195,892,611 - 195,927,737 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648715,661,079 - 15,696,406 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648715,661,133 - 15,696,267 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC25A25
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1268,531,752 - 268,576,994 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11268,531,752 - 268,575,195 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21302,558,673 - 302,565,658 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.21302,453,222 - 302,453,476 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC25A25
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11210,017,775 - 10,059,013 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1210,017,755 - 10,035,476 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660796,165,921 - 6,208,553 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc25a25
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247607,515,764 - 7,550,810 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247607,516,910 - 7,550,897 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000028342   ⟹   ENSPPAP00000006721
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl9127,859,948 - 127,900,922 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000028354   ⟹   ENSPPAP00000006730
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl9127,883,167 - 127,900,922 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000028357   ⟹   ENSPPAP00000006732
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl9127,883,167 - 127,900,922 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000028368   ⟹   ENSPPAP00000006733
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl9127,890,182 - 127,900,922 (+)Ensembl
RefSeq Acc Id: XM_003822311   ⟹   XP_003822359
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21111,243,799 - 11,255,172 (-)NCBI
NHGRI_mPanPan1911,246,147 - 11,257,475 (-)NCBI
Mhudiblu_PPA_v0999,219,034 - 99,229,771 (+)NCBI
PanPan1.19127,890,177 - 127,900,922 (+)NCBI
Sequence:
RefSeq Acc Id: XM_003822312   ⟹   XP_003822360
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21111,243,799 - 11,284,673 (-)NCBI
NHGRI_mPanPan1911,246,147 - 11,287,021 (-)NCBI
Mhudiblu_PPA_v0999,188,910 - 99,229,771 (+)NCBI
PanPan1.19127,859,948 - 127,900,922 (+)NCBI
Sequence:
RefSeq Acc Id: XM_003822313   ⟹   XP_003822361
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21111,243,799 - 11,261,665 (-)NCBI
NHGRI_mPanPan1911,246,147 - 11,264,033 (-)NCBI
Mhudiblu_PPA_v0999,212,024 - 99,229,771 (+)NCBI
PanPan1.19127,883,167 - 127,900,922 (+)NCBI
Sequence:
RefSeq Acc Id: XM_003822314   ⟹   XP_003822362
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21111,243,799 - 11,261,671 (-)NCBI
NHGRI_mPanPan1911,246,147 - 11,264,036 (-)NCBI
Mhudiblu_PPA_v0999,211,880 - 99,229,771 (+)NCBI
PanPan1.19127,883,167 - 127,900,922 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008975834   ⟹   XP_008974082
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21111,243,799 - 11,284,658 (-)NCBI
NHGRI_mPanPan1911,246,147 - 11,287,006 (-)NCBI
Mhudiblu_PPA_v0999,188,909 - 99,229,771 (+)NCBI
PanPan1.19127,859,948 - 127,900,922 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008975835   ⟹   XP_008974083
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21111,243,799 - 11,255,175 (-)NCBI
NHGRI_mPanPan1911,246,147 - 11,257,477 (-)NCBI
Mhudiblu_PPA_v0999,218,449 - 99,229,771 (+)NCBI
PanPan1.19127,890,184 - 127,900,922 (+)NCBI
Sequence:
RefSeq Acc Id: XP_008974082   ⟸   XM_008975834
- Peptide Label: isoform X1
- UniProtKB: A0A2R8ZP57 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003822360   ⟸   XM_003822312
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_003822362   ⟸   XM_003822314
- Peptide Label: isoform X3
- UniProtKB: A0A2R8ZP71 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003822361   ⟸   XM_003822313
- Peptide Label: isoform X4
- UniProtKB: A0A2R8ZQE2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003822359   ⟸   XM_003822311
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_008974083   ⟸   XM_008975835
- Peptide Label: isoform X5
- UniProtKB: A0A2R8ZS84 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSPPAP00000006732   ⟸   ENSPPAT00000028357
Ensembl Acc Id: ENSPPAP00000006730   ⟸   ENSPPAT00000028354
Ensembl Acc Id: ENSPPAP00000006721   ⟸   ENSPPAT00000028342
Ensembl Acc Id: ENSPPAP00000006733   ⟸   ENSPPAT00000028368
Protein Domains
EF-hand


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000025581 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000028342.1 UniProtKB/TrEMBL
  ENSPPAT00000028354.1 UniProtKB/TrEMBL
  ENSPPAT00000028357.1 UniProtKB/TrEMBL
  ENSPPAT00000028368.1 UniProtKB/TrEMBL
Gene3D-CATH 1.50.40.10 UniProtKB/TrEMBL
  EF-hand UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
  Graves_DC UniProtKB/TrEMBL
  Mit_carrier UniProtKB/TrEMBL
  Mitochondrial_sb/sol_carrier UniProtKB/TrEMBL
  Mt_carrier_dom_sf UniProtKB/TrEMBL
NCBI Gene SLC25A25 ENTREZGENE
PANTHER SOLUTE CARRIER FAMILY 25 UniProtKB/TrEMBL
Pfam EF-hand_7 UniProtKB/TrEMBL
  EF-hand_8 UniProtKB/TrEMBL
  Mito_carr UniProtKB/TrEMBL
PRINTS GRAVESDC UniProtKB/TrEMBL
  MITOCARRIER UniProtKB/TrEMBL
PROSITE EF_HAND_2 UniProtKB/TrEMBL
  SOLCAR UniProtKB/TrEMBL
SMART EFh UniProtKB/TrEMBL
Superfamily-SCOP SSF103506 UniProtKB/TrEMBL
  SSF47473 UniProtKB/TrEMBL
UniProt A0A2R8ZP57 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8ZP71 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8ZQE2 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8ZS84 ENTREZGENE, UniProtKB/TrEMBL