LOC100986897 (telomeric repeat-binding factor 1-like) - Rat Genome Database

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Gene: LOC100986897 (telomeric repeat-binding factor 1-like) Pan paniscus
Analyze
Symbol: LOC100986897
Name: telomeric repeat-binding factor 1-like
RGD ID: 11909636
Description: ENCODES a protein that exhibits ankyrin repeat binding (inferred); DNA binding (inferred); DNA binding, bending (inferred); INVOLVED IN negative regulation of DNA replication (inferred); negative regulation of telomeric D-loop disassembly (inferred); telomere maintenance (inferred); FOUND IN chromosome (inferred); chromosome, telomeric region (inferred); nuclear telomere cap complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: telomeric repeat-binding factor 1 pseudogene
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21418,257,541 - 18,260,140 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1139,360,115 - 9,362,598 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v021505,145 - 506,691 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_055097206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_055097206   ⟹   XP_054953181
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21418,257,541 - 18,260,140 (+)NCBI
NHGRI_mPanPan1139,360,115 - 9,362,598 (+)NCBI
Protein Sequences
Protein RefSeqs XP_054953181 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000027636.1
RefSeq Acc Id: XP_054953181   ⟸   XM_055097206
- UniProtKB: A0A2R9BH77 (UniProtKB/TrEMBL)
Protein Domains
HTH myb-type   Myb-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000036878 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000050478.1 UniProtKB/TrEMBL
Gene3D-CATH Homeodomain-like UniProtKB/TrEMBL
  Telomere repeat-binding factor, dimerisation domain UniProtKB/TrEMBL
InterPro Homeobox-like_sf UniProtKB/TrEMBL
  Myb_dom UniProtKB/TrEMBL
  SANT/Myb UniProtKB/TrEMBL
  Telomere_rpt-bd_fac_dimer_dom UniProtKB/TrEMBL
  Telomere_rpt-bd_fac_dimer_sf UniProtKB/TrEMBL
  TERF1/2 UniProtKB/TrEMBL
  TRBD-Containing_Protein UniProtKB/TrEMBL
NCBI Gene LOC100986897 ENTREZGENE
PANTHER TELOMERIC REPEAT-BINDING FACTOR 1 UniProtKB/TrEMBL
  TELOMERIC REPEAT-BINDING FACTOR 1 TERF1 UniProtKB/TrEMBL
Pfam Myb_DNA-binding UniProtKB/TrEMBL
  TRF UniProtKB/TrEMBL
PIRSF Telomere_bd-1_Pin2 UniProtKB/TrEMBL
PROSITE HTH_MYB UniProtKB/TrEMBL
  MYB_LIKE UniProtKB/TrEMBL
SMART SANT UniProtKB/TrEMBL
Superfamily-SCOP Homeodomain-like UniProtKB/TrEMBL
  Telomeric repeat binding factor (TRF) dimerisation domain UniProtKB/TrEMBL
UniProt A0A2R9BH77 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-07-01 LOC100986897  telomeric repeat-binding factor 1-like  LOC100986897  telomeric repeat-binding factor 1 pseudogene  Symbol and/or name change 5135510 APPROVED