ATG2B (autophagy related 2B) - Rat Genome Database

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Gene: ATG2B (autophagy related 2B) Pan paniscus
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Symbol: ATG2B
Name: autophagy related 2B
RGD ID: 11897986
Description: ENCODES a protein that exhibits lipid transfer activity (inferred); phosphatidylinositol-3-phosphate binding (inferred); protein-membrane adaptor activity (inferred); INVOLVED IN autophagosome assembly (inferred); autophagy (inferred); autophagy of mitochondrion (inferred); ASSOCIATED WITH acute myeloid leukemia (ortholog); essential thrombocythemia (ortholog); myelofibrosis (ortholog); FOUND IN endoplasmic reticulum (inferred); endoplasmic reticulum membrane (inferred); intracellular membrane-bounded organelle (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: autophagy-related protein 2 homolog B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21597,441,258 - 97,523,352 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11496,657,763 - 96,739,856 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01476,910,943 - 76,992,969 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11496,233,322 - 96,314,881 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1496,237,825 - 96,314,881 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
ATG2B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21597,441,258 - 97,523,352 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11496,657,763 - 96,739,856 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01476,910,943 - 76,992,969 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11496,233,322 - 96,314,881 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1496,237,825 - 96,314,881 (-)Ensemblpanpan1.1panPan2
ATG2B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381496,279,195 - 96,363,341 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1496,279,195 - 96,363,341 (-)EnsemblGRCh38hg38GRCh38
GRCh371496,745,532 - 96,829,678 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361495,817,348 - 95,899,431 (-)NCBINCBI36Build 36hg18NCBI36
Build 341495,820,836 - 95,853,254NCBI
Celera1476,803,312 - 76,885,404 (-)NCBICelera
Cytogenetic Map14q32.2NCBI
HuRef1476,932,696 - 77,014,765 (-)NCBIHuRef
CHM1_11496,686,513 - 96,768,523 (-)NCBICHM1_1
T2T-CHM13v2.01490,510,437 - 90,594,937 (-)NCBIT2T-CHM13v2.0
Atg2b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912105,579,798 - 105,651,554 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12105,582,395 - 105,651,470 (-)EnsemblGRCm39 Ensembl
GRCm3812105,613,539 - 105,685,297 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12105,616,136 - 105,685,211 (-)EnsemblGRCm38mm10GRCm38
MGSCv3712106,851,749 - 106,923,451 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612106,017,186 - 106,047,879 (-)NCBIMGSCv36mm8
Celera12106,848,151 - 106,919,764 (-)NCBICelera
Cytogenetic Map12ENCBI
cM Map1255.82NCBI
Atg2b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86130,286,979 - 130,357,109 (-)NCBIGRCr8
mRatBN7.26124,522,283 - 124,592,412 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6124,525,523 - 124,592,015 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.06129,449,451 - 129,519,599 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6129,449,449 - 129,509,720 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06138,642,749 - 138,712,529 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46129,773,507 - 129,841,598 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16129,778,695 - 129,803,238 (-)NCBI
Celera6122,089,232 - 122,159,479 (-)NCBICelera
Cytogenetic Map6q32NCBI
Atg2b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543818,078,685 - 18,153,098 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543818,080,641 - 18,153,490 (-)NCBIChiLan1.0ChiLan1.0
ATG2B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1865,039,960 - 65,110,811 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl865,044,194 - 65,110,796 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha864,555,847 - 64,626,693 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0865,311,353 - 65,382,558 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl865,314,912 - 65,382,482 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1864,984,413 - 65,055,244 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0865,045,745 - 65,116,666 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0865,369,420 - 65,440,283 (-)NCBIUU_Cfam_GSD_1.0
Atg2b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244086409,441,264 - 9,502,872 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936604584,480 - 641,183 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936604583,391 - 641,217 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATG2B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7117,506,302 - 117,586,545 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.17117,506,298 - 117,586,651 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27124,763,437 - 124,844,551 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATG2B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12474,163,750 - 74,246,131 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2474,163,442 - 74,246,116 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605361,314,998 - 61,397,385 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atg2b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247347,015,672 - 7,096,348 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247347,015,356 - 7,097,392 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000051364   ⟹   ENSPPAP00000028517
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1496,237,825 - 96,314,881 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000051370   ⟹   ENSPPAP00000028523
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1496,237,825 - 96,314,881 (-)Ensembl
RefSeq Acc Id: XM_003832843   ⟹   XP_003832891
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21597,441,258 - 97,523,352 (-)NCBI
NHGRI_mPanPan11496,657,763 - 96,739,856 (-)NCBI
Mhudiblu_PPA_v01476,910,943 - 76,992,969 (-)NCBI
PanPan1.11496,233,322 - 96,314,881 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034938084   ⟹   XP_034793975
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21597,441,258 - 97,523,332 (-)NCBI
NHGRI_mPanPan11496,657,763 - 96,739,811 (-)NCBI
Mhudiblu_PPA_v01476,910,943 - 76,992,969 (-)NCBI
Protein Sequences
Protein RefSeqs XP_003832891 (Get FASTA)   NCBI Sequence Viewer  
  XP_034793975 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000028517.1
  ENSPPAP00000028523.1
RefSeq Acc Id: XP_003832891   ⟸   XM_003832843
- Peptide Label: isoform X1
- UniProtKB: A0A2R9BGV2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034793975   ⟸   XM_034938084
- Peptide Label: isoform X2
- UniProtKB: A0A2R9BGV2 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSPPAP00000028517   ⟸   ENSPPAT00000051364
Ensembl Acc Id: ENSPPAP00000028523   ⟸   ENSPPAT00000051370

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000037257 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000051364.1 UniProtKB/TrEMBL
  ENSPPAT00000051370.1 UniProtKB/TrEMBL
InterPro ATG2 UniProtKB/TrEMBL
  ATG2_mid_RBG UniProtKB/TrEMBL
  Autophagy-rel_C UniProtKB/TrEMBL
  VPS13-like_N UniProtKB/TrEMBL
NCBI Gene ATG2B ENTREZGENE
PANTHER AUTOPHAGY-RELATED PROTEIN 2 HOMOLOG B UniProtKB/TrEMBL
  PTHR13190 UniProtKB/TrEMBL
Pfam ATG2_CAD UniProtKB/TrEMBL
  ATG_C UniProtKB/TrEMBL
  Chorein_N UniProtKB/TrEMBL
UniProt A0A2R9BGV2 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9BJM2_PANPA UniProtKB/TrEMBL