TRIM71 (tripartite motif containing 71) - Rat Genome Database

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Gene: TRIM71 (tripartite motif containing 71) Pan paniscus
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Symbol: TRIM71
Name: tripartite motif containing 71
RGD ID: 11897052
Description: ENCODES a protein that exhibits miRNA binding (inferred); translation repressor activity (inferred); ubiquitin protein ligase activity (inferred); INVOLVED IN neural tube closure (ortholog); positive regulation of miRNA-mediated gene silencing (ortholog); post-transcriptional regulation of gene expression (ortholog); ASSOCIATED WITH Congenital Communicating Hydrocephalus 1 (ortholog); COVID-19 (ortholog); CRYPTOZOOSPERMIA (ortholog); FOUND IN P-body (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: E3 ubiquitin-protein ligase TRIM71
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2232,797,964 - 32,877,720 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1332,802,730 - 32,882,485 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0332,745,217 - 32,824,985 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1333,050,997 - 33,127,389 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl333,050,997 - 33,123,910 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
P-body  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TRIM71
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2232,797,964 - 32,877,720 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1332,802,730 - 32,882,485 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0332,745,217 - 32,824,985 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1333,050,997 - 33,127,389 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl333,050,997 - 33,123,910 (+)Ensemblpanpan1.1panPan2
TRIM71
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38332,817,997 - 32,897,824 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl332,817,997 - 32,897,824 (+)EnsemblGRCh38hg38GRCh38
GRCh37332,859,489 - 32,939,316 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36332,834,514 - 32,908,775 (+)NCBINCBI36Build 36hg18NCBI36
Celera332,796,792 - 32,870,969 (+)NCBICelera
Cytogenetic Map3p22.3NCBI
HuRef332,795,360 - 32,869,252 (+)NCBIHuRef
CHM1_1332,809,475 - 32,883,728 (+)NCBICHM1_1
T2T-CHM13v2.0332,816,172 - 32,895,937 (+)NCBIT2T-CHM13v2.0
Trim71
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399114,340,336 - 114,393,437 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9114,336,201 - 114,393,437 (-)EnsemblGRCm39 Ensembl
GRCm389114,511,268 - 114,564,369 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9114,507,133 - 114,564,369 (-)EnsemblGRCm38mm10GRCm38
MGSCv379114,163,741 - 114,214,213 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369114,361,343 - 114,411,815 (-)NCBIMGSCv36mm8
Celera9114,985,559 - 115,054,772 (-)NCBICelera
Cytogenetic Map9F3NCBI
cM Map964.54NCBI
Trim71
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88123,076,499 - 123,129,016 (-)NCBIGRCr8
mRatBN7.28114,193,439 - 114,250,807 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8114,199,187 - 114,250,807 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8119,816,432 - 119,867,941 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08118,015,676 - 118,067,192 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08115,858,501 - 115,910,021 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08122,553,015 - 122,604,787 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8122,553,015 - 122,604,787 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08121,865,609 - 121,917,140 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48118,905,817 - 118,972,365 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera8113,446,095 - 113,498,183 (-)NCBICelera
Cytogenetic Map8q32NCBI
Trim71
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542197,772 - 168,432 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542197,130 - 174,326 (+)NCBIChiLan1.0ChiLan1.0
TRIM71
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1233,888,287 - 3,959,910 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl233,893,647 - 3,960,411 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha233,932,083 - 4,003,431 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0234,149,436 - 4,221,387 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl234,154,795 - 4,221,622 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1233,983,609 - 4,055,232 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0234,114,710 - 4,186,051 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0234,084,133 - 4,156,041 (-)NCBIUU_Cfam_GSD_1.0
Trim71
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118190,084,507 - 190,153,358 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647323,224,588 - 23,290,169 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647323,223,984 - 23,290,177 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRIM71
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1318,761,950 - 18,831,564 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11318,762,043 - 18,835,788 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TRIM71
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11577,319,064 - 77,396,036 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1577,319,148 - 77,390,066 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604150,696,403 - 50,770,434 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Trim71
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478810,859,932 - 10,929,029 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478810,858,490 - 10,929,693 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_034956030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSPPAT00000032927   ⟹   ENSPPAP00000010278
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl333,050,997 - 33,123,910 (+)Ensembl
RefSeq Acc Id: XM_034956030   ⟹   XP_034811921
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2232,797,964 - 32,877,720 (+)NCBI
NHGRI_mPanPan1332,802,730 - 32,882,485 (+)NCBI
Mhudiblu_PPA_v0332,745,217 - 32,824,985 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034811921 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000010278.1
RefSeq Acc Id: XP_034811921   ⟸   XM_034956030
Ensembl Acc Id: ENSPPAP00000010278   ⟸   ENSPPAT00000032927
Protein Domains
B box-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000028362 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000032927.1 UniProtKB/TrEMBL
Gene3D-CATH 2.120.10.30 UniProtKB/TrEMBL
  2.60.40.10 UniProtKB/TrEMBL
  4.10.830.40 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro 6-blade_b-propeller_TolB-like UniProtKB/TrEMBL
  Filamin/ABP280_repeat-like UniProtKB/TrEMBL
  Filamin/ABP280_rpt UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_E-set UniProtKB/TrEMBL
  NHL_repeat UniProtKB/TrEMBL
  TRIM-NHL_E3_ligases UniProtKB/TrEMBL
  Znf_B-box UniProtKB/TrEMBL
NCBI Gene TRIM71 ENTREZGENE
PANTHER E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED UniProtKB/TrEMBL
  RING-TYPE DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam Filamin UniProtKB/TrEMBL
  NHL UniProtKB/TrEMBL
  zf-B_box UniProtKB/TrEMBL
PROSITE FILAMIN_REPEAT UniProtKB/TrEMBL
  NHL UniProtKB/TrEMBL
  ZF_BBOX UniProtKB/TrEMBL
SMART BBOX UniProtKB/TrEMBL
  IG_FLMN UniProtKB/TrEMBL
Superfamily-SCOP B-box zinc-binding domain UniProtKB/TrEMBL
  NHL repeat UniProtKB/TrEMBL
  SSF81296 UniProtKB/TrEMBL
UniProt A0A2R9A0B0_PANPA UniProtKB/TrEMBL