HNRNPA1 (heterogeneous nuclear ribonucleoprotein A1) - Rat Genome Database

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Gene: HNRNPA1 (heterogeneous nuclear ribonucleoprotein A1) Pan paniscus
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Symbol: HNRNPA1
Name: heterogeneous nuclear ribonucleoprotein A1
RGD ID: 11889808
Description: ENCODES a protein that exhibits DNA binding (ortholog); DNA/DNA annealing activity (ortholog); G-rich strand telomeric DNA binding (ortholog); INVOLVED IN alternative mRNA splicing, via spliceosome (ortholog); cellular response to epidermal growth factor stimulus (ortholog); cellular response to glucose starvation (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); amyotrophic lateral sclerosis type 20 (ortholog); Animal Disease Models (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); nucleoplasmic periphery of the nuclear pore complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21039,884,192 - 39,891,112 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11239,880,960 - 39,887,881 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01234,456,900 - 34,463,317 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11235,182,164 - 35,188,651 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1235,184,943 - 35,188,443 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
HNRNPA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21039,884,192 - 39,891,112 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11239,880,960 - 39,887,881 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01234,456,900 - 34,463,317 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11235,182,164 - 35,188,651 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1235,184,943 - 35,188,443 (-)Ensemblpanpan1.1panPan2
HNRNPA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381254,280,726 - 54,287,087 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1254,280,193 - 54,287,088 (+)EnsemblGRCh38hg38GRCh38
GRCh371254,674,510 - 54,680,871 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361252,960,755 - 52,965,297 (+)NCBINCBI36Build 36hg18NCBI36
Build 341252,960,754 - 52,965,297NCBI
Celera1254,326,467 - 54,331,009 (+)NCBICelera
Cytogenetic Map12q13.13NCBI
HuRef1251,713,759 - 51,718,301 (+)NCBIHuRef
CHM1_11254,641,226 - 54,645,768 (+)NCBICHM1_1
T2T-CHM13v2.01254,247,303 - 54,253,664 (+)NCBIT2T-CHM13v2.0
Hnrnpa1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3915103,148,840 - 103,155,119 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl15103,148,859 - 103,155,119 (+)EnsemblGRCm39 Ensembl
GRCm3815103,239,943 - 103,246,698 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl15103,240,432 - 103,246,692 (+)EnsemblGRCm38mm10GRCm38
MGSCv3715103,070,863 - 103,075,386 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3615103,068,466 - 103,072,989 (+)NCBIMGSCv36mm8
Celera15105,402,021 - 105,406,544 (+)NCBICelera
Cytogenetic Map15F3NCBI
cM Map1558.58NCBI
Hnrnpa1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87136,253,633 - 136,260,085 (+)NCBIGRCr8
mRatBN7.27134,375,318 - 134,381,610 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7134,375,150 - 134,381,609 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7136,130,862 - 136,135,162 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07138,360,240 - 138,364,540 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07138,346,358 - 138,350,660 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07144,865,302 - 144,871,592 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7144,865,608 - 144,871,585 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07142,647,071 - 142,652,967 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47142,150,229 - 142,154,520 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17142,230,417 - 142,234,709 (+)NCBI
Celera7130,801,278 - 130,805,569 (+)NCBICelera
Cytogenetic Map7q36NCBI
Hnrnpa1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554581,530,163 - 1,536,874 (+)NCBIChiLan1.0ChiLan1.0
HNRNPA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1271,013,459 - 1,020,083 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl271,015,868 - 1,019,891 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2745,235,341 - 45,240,080 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0271,012,273 - 1,017,012 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl271,012,271 - 1,016,841 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1271,031,242 - 1,035,976 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0271,010,967 - 1,017,580 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02745,639,146 - 45,643,882 (+)NCBIUU_Cfam_GSD_1.0
Hnrnpa1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494561,677,106 - 61,683,541 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493651211,481,017 - 11,487,737 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HNRNPA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl519,485,096 - 19,491,417 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1519,485,033 - 19,491,418 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2520,329,539 - 20,334,145 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HNRNPA1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11150,397,173 - 50,403,192 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1150,396,888 - 50,400,802 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037195,638,486 - 195,645,432 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hnrnpa1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249042,314,249 - 2,318,791 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249042,314,197 - 2,320,900 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000019769   ⟹   ENSPPAP00000004271
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1235,184,943 - 35,188,443 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000019770   ⟹   ENSPPAP00000004272
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1235,184,943 - 35,188,443 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000019778   ⟹   ENSPPAP00000004274
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1235,184,943 - 35,188,443 (-)Ensembl
RefSeq Acc Id: XM_057299437   ⟹   XP_057155420
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21039,886,037 - 39,891,112 (-)NCBI
NHGRI_mPanPan11239,880,960 - 39,887,881 (-)NCBI
RefSeq Acc Id: XM_057299439   ⟹   XP_057155422
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21039,886,037 - 39,891,112 (-)NCBI
NHGRI_mPanPan11239,880,960 - 39,887,881 (-)NCBI
RefSeq Acc Id: XR_010108910
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21039,884,192 - 39,890,613 (-)NCBI
RefSeq Acc Id: XR_010108911
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21039,884,192 - 39,890,723 (-)NCBI
Protein Sequences
Protein RefSeqs XP_057155420 (Get FASTA)   NCBI Sequence Viewer  
  XP_057155422 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000004271.1
  ENSPPAP00000004272.1
  ENSPPAP00000004274.1
  ENSPPAP00000006827.1
Ensembl Acc Id: ENSPPAP00000004271   ⟸   ENSPPAT00000019769
Ensembl Acc Id: ENSPPAP00000004272   ⟸   ENSPPAT00000019770
Ensembl Acc Id: ENSPPAP00000004274   ⟸   ENSPPAT00000019778
RefSeq Acc Id: XP_057155422   ⟸   XM_057299439
- Peptide Label: isoform X2
- UniProtKB: A0A2R8ZK80 (UniProtKB/TrEMBL),   A0A2R8ZQM5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_057155420   ⟸   XM_057299437
- Peptide Label: isoform X1
- UniProtKB: A0A2R8ZHP5 (UniProtKB/TrEMBL)
Protein Domains
RRM


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000018027 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSPPAG00000025744 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000019769.1 UniProtKB/TrEMBL
  ENSPPAT00000019770.1 UniProtKB/TrEMBL
  ENSPPAT00000019778.1 UniProtKB/TrEMBL
  ENSPPAT00000028573.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
InterPro HnRNPA1 UniProtKB/TrEMBL
  hnRNPA1/3_RRM2 UniProtKB/TrEMBL
  hnRNPA1_RRM1 UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
NCBI Gene HNRNPA1 ENTREZGENE
PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN A1-RELATED UniProtKB/TrEMBL
  HOMOLOGOUS TO DROSOPHILA SQD (SQUID) PROTEIN UniProtKB/TrEMBL
Pfam HnRNPA1 UniProtKB/TrEMBL
  RRM_1 UniProtKB/TrEMBL
PROSITE RRM UniProtKB/TrEMBL
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A2R8ZH15_PANPA UniProtKB/TrEMBL
  A0A2R8ZHP5 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8ZK80 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8ZQM5 ENTREZGENE, UniProtKB/TrEMBL