ATG9A (autophagy related 9A) - Rat Genome Database

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Gene: ATG9A (autophagy related 9A) Pan paniscus
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Symbol: ATG9A
Name: autophagy related 9A
RGD ID: 11868362
Description: ENCODES a protein that exhibits phospholipid scramblase activity (inferred); INVOLVED IN autophagosome assembly (ortholog); autophagy (ortholog); bone morphogenesis (ortholog); PARTICIPATES IN autophagy pathway; ASSOCIATED WITH alacrima, achalasia, and impaired intellectual development syndrome (ortholog); cerebrotendinous xanthomatosis (ortholog); myofibrillar myopathy 1 (ortholog); FOUND IN autophagosome membrane (ortholog); cytoplasm (ortholog); late endosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: autophagy-related protein 9A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213121,849,883 - 121,860,282 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B121,864,848 - 121,875,247 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B106,477,007 - 106,487,249 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B225,067,959 - 225,078,272 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B225,067,590 - 225,078,065 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
ATG9A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213121,849,883 - 121,860,282 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B121,864,848 - 121,875,247 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B106,477,007 - 106,487,249 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B225,067,959 - 225,078,272 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B225,067,590 - 225,078,065 (-)Ensemblpanpan1.1panPan2
ATG9A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382219,219,380 - 219,229,636 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2219,219,380 - 219,229,717 (-)EnsemblGRCh38hg38GRCh38
GRCh372220,084,102 - 220,094,358 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362219,792,346 - 219,802,605 (-)NCBINCBI36Build 36hg18NCBI36
Build 342219,909,606 - 219,919,835NCBI
Celera2213,853,809 - 213,864,068 (-)NCBICelera
Cytogenetic Map2q35NCBI
HuRef2211,937,399 - 211,947,519 (-)NCBIHuRef
CHM1_12220,089,938 - 220,100,197 (-)NCBICHM1_1
T2T-CHM13v2.02219,704,146 - 219,714,401 (-)NCBIT2T-CHM13v2.0
Atg9a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39175,157,509 - 75,168,654 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl175,157,504 - 75,168,840 (-)EnsemblGRCm39 Ensembl
GRCm38175,180,861 - 75,192,010 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl175,180,860 - 75,192,196 (-)EnsemblGRCm38mm10GRCm38
MGSCv37175,177,440 - 75,188,497 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36175,064,012 - 75,075,343 (-)NCBIMGSCv36mm8
Celera175,671,723 - 75,682,810 (-)NCBICelera
Cytogenetic Map1C4NCBI
cM Map138.62NCBI
Atg9a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8984,126,071 - 84,136,723 (-)NCBIGRCr8
mRatBN7.2976,677,403 - 76,688,050 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl976,677,404 - 76,687,986 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx985,121,980 - 85,132,633 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0990,250,871 - 90,261,524 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0988,637,084 - 88,647,737 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0982,382,800 - 82,393,429 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl982,382,800 - 82,393,382 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0982,152,061 - 82,162,660 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4974,463,655 - 74,474,286 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1974,610,636 - 74,621,268 (-)NCBI
Celera974,247,853 - 74,258,401 (-)NCBICelera
Cytogenetic Map9q33NCBI
Atg9a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545314,206,065 - 14,213,729 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545314,203,798 - 14,214,760 (+)NCBIChiLan1.0ChiLan1.0
ATG9A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13725,768,287 - 25,777,529 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3725,768,275 - 25,890,811 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3726,594,184 - 26,603,430 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03725,783,514 - 25,792,755 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3725,783,514 - 25,792,506 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13725,687,927 - 25,697,172 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03725,623,048 - 25,632,281 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03725,643,892 - 25,653,138 (-)NCBIUU_Cfam_GSD_1.0
Atg9a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303175,293,177 - 175,302,830 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365691,635,836 - 1,645,815 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365691,635,958 - 1,645,600 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATG9A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15121,254,355 - 121,265,569 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115121,254,355 - 121,265,564 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215134,289,150 - 134,300,499 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATG9A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110105,123,039 - 105,133,057 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10105,124,412 - 105,131,409 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604094,263,211 - 94,273,258 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atg9a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248235,787,601 - 5,797,534 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248235,787,525 - 5,797,536 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000046932   ⟹   ENSPPAP00000024107
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2B225,067,590 - 225,076,580 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000046944   ⟹   ENSPPAP00000024119
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2B225,067,959 - 225,078,065 (-)Ensembl
RefSeq Acc Id: XM_003818643   ⟹   XP_003818691
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v213121,849,883 - 121,860,142 (-)NCBI
NHGRI_mPanPan12B121,864,848 - 121,875,107 (-)NCBI
Mhudiblu_PPA_v02B106,477,007 - 106,487,249 (-)NCBI
PanPan1.12B225,067,959 - 225,078,243 (-)NCBI
Sequence:
RefSeq Acc Id: XM_003818644   ⟹   XP_003818692
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v213121,849,883 - 121,860,170 (-)NCBI
NHGRI_mPanPan12B121,864,848 - 121,875,135 (-)NCBI
Mhudiblu_PPA_v02B106,477,007 - 106,487,242 (-)NCBI
PanPan1.12B225,067,959 - 225,078,272 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008972002   ⟹   XP_008970250
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v213121,849,883 - 121,859,853 (-)NCBI
NHGRI_mPanPan12B121,864,848 - 121,874,820 (-)NCBI
Mhudiblu_PPA_v02B106,477,007 - 106,486,971 (-)NCBI
PanPan1.12B225,067,959 - 225,078,065 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008972004   ⟹   XP_008970252
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v213121,849,883 - 121,860,282 (-)NCBI
NHGRI_mPanPan12B121,864,848 - 121,875,247 (-)NCBI
Mhudiblu_PPA_v02B106,477,007 - 106,487,229 (-)NCBI
PanPan1.12B225,067,959 - 225,078,194 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008972005   ⟹   XP_008970253
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v213121,849,883 - 121,859,866 (-)NCBI
NHGRI_mPanPan12B121,864,848 - 121,874,831 (-)NCBI
Mhudiblu_PPA_v02B106,477,007 - 106,486,971 (-)NCBI
PanPan1.12B225,067,959 - 225,077,914 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063595567   ⟹   XP_063451637
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v213121,849,883 - 121,860,122 (-)NCBI
RefSeq Acc Id: XM_063595568   ⟹   XP_063451638
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v213121,849,883 - 121,860,119 (-)NCBI
RefSeq Acc Id: XP_003818692   ⟸   XM_003818644
- UniProtKB: A0A2R9BA63 (UniProtKB/TrEMBL),   A0A2R9B3D5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003818691   ⟸   XM_003818643
- UniProtKB: A0A2R9BA63 (UniProtKB/TrEMBL),   A0A2R9B3D5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008970252   ⟸   XM_008972004
- UniProtKB: A0A2R9BA63 (UniProtKB/TrEMBL),   A0A2R9B3D5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008970250   ⟸   XM_008972002
- UniProtKB: A0A2R9BA63 (UniProtKB/TrEMBL),   A0A2R9B3D5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008970253   ⟸   XM_008972005
- UniProtKB: A0A2R9BA63 (UniProtKB/TrEMBL),   A0A2R9B3D5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSPPAP00000024119   ⟸   ENSPPAT00000046944
Ensembl Acc Id: ENSPPAP00000024107   ⟸   ENSPPAT00000046932
RefSeq Acc Id: XP_063451637   ⟸   XM_063595567
- UniProtKB: A0A2R9BA63 (UniProtKB/TrEMBL),   A0A2R9B3D5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063451638   ⟸   XM_063595568
- UniProtKB: A0A2R9BA63 (UniProtKB/TrEMBL),   A0A2R9B3D5 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000035200 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000046932.1 UniProtKB/TrEMBL
  ENSPPAT00000046944.1 UniProtKB/TrEMBL
InterPro Autophagy-rel_prot_9 UniProtKB/TrEMBL
KEGG Report pps:100994389 UniProtKB/TrEMBL
NCBI Gene ATG9A ENTREZGENE
PANTHER AUTOPHAGY-RELATED PROTEIN 9A UniProtKB/TrEMBL
  PTHR13038 UniProtKB/TrEMBL
Pfam APG9 UniProtKB/TrEMBL
UniProt A0A2R9B3D5 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9BA63 ENTREZGENE, UniProtKB/TrEMBL