LMAN2L (lectin, mannose binding 2 like) - Rat Genome Database

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Gene: LMAN2L (lectin, mannose binding 2 like) Pan paniscus
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Symbol: LMAN2L
Name: lectin, mannose binding 2 like
RGD ID: 11863131
Description: ENCODES a protein that exhibits D-mannose binding (inferred); INVOLVED IN endoplasmic reticulum to Golgi vesicle-mediated transport (inferred); protein transport (inferred); ASSOCIATED WITH Autosomal Dominant Intellectual Developmental Disorder 69 (ortholog); autosomal recessive intellectual developmental disorder 52 (ortholog); bipolar disorder (ortholog); FOUND IN COPII-coated ER to Golgi transport vesicle (inferred); endoplasmic reticulum membrane (inferred); endoplasmic reticulum-Golgi intermediate compartment (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: VIP36-like protein-like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21231,567,631 - 31,601,803 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A31,570,393 - 31,605,872 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A102,573,894 - 102,608,066 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A97,628,021 - 97,661,751 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A97,628,021 - 97,661,745 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
LMAN2L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21231,567,631 - 31,601,803 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A31,570,393 - 31,605,872 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A102,573,894 - 102,608,066 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A97,628,021 - 97,661,751 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A97,628,021 - 97,661,745 (-)Ensemblpanpan1.1panPan2
LMAN2L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38296,705,929 - 96,740,064 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl296,705,929 - 96,740,064 (-)EnsemblGRCh38hg38GRCh38
GRCh37297,371,666 - 97,405,801 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36296,735,393 - 96,769,528 (-)NCBINCBI36Build 36hg18NCBI36
Build 34296,793,542 - 96,827,675NCBI
Celera291,812,913 - 91,845,986 (-)NCBICelera
Cytogenetic Map2q11.2NCBI
HuRef291,332,308 - 91,366,499 (-)NCBIHuRef
CHM1_1297,376,571 - 97,410,719 (-)NCBICHM1_1
T2T-CHM13v2.0297,212,567 - 97,246,702 (-)NCBIT2T-CHM13v2.0
Lman2l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39136,458,274 - 36,484,352 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl136,458,952 - 36,484,352 (-)EnsemblGRCm39 Ensembl
GRCm38136,418,900 - 36,445,271 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl136,419,871 - 36,445,271 (-)EnsemblGRCm38mm10GRCm38
MGSCv37136,480,031 - 36,502,084 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36136,367,732 - 36,389,785 (-)NCBIMGSCv36mm8
Celera136,209,990 - 36,232,040 (-)NCBICelera
Cytogenetic Map1BNCBI
cM Map115.26NCBI
Lman2l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8946,157,596 - 46,181,151 (-)NCBIGRCr8
mRatBN7.2938,661,709 - 38,685,244 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl938,661,712 - 38,685,337 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx947,165,415 - 47,188,981 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0952,280,511 - 52,304,041 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0950,562,410 - 50,585,939 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0943,020,940 - 43,023,015 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl942,999,229 - 43,022,999 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0942,674,819 - 42,676,894 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4935,381,997 - 35,384,072 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1935,366,221 - 35,385,543 (-)NCBI
Celera936,449,735 - 36,451,810 (-)NCBICelera
Cytogenetic Map9q21NCBI
Lman2l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554704,080,723 - 4,100,754 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554704,080,723 - 4,100,662 (-)NCBIChiLan1.0ChiLan1.0
LMAN2L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11045,215,871 - 45,245,961 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1045,215,787 - 45,245,649 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1045,142,064 - 45,172,145 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01046,091,511 - 46,121,775 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1046,091,429 - 46,122,126 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11045,802,629 - 45,810,509 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01046,089,435 - 46,119,726 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01046,272,994 - 46,303,271 (+)NCBIUU_Cfam_GSD_1.0
Lman2l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629283,412,951 - 83,438,393 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936744664,733 - 691,347 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936744665,893 - 691,335 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LMAN2L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl356,879,221 - 56,906,710 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1356,879,301 - 56,902,356 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
LMAN2L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1141,039,095 - 1,071,178 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl141,040,423 - 1,071,085 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041168,469,687 - 168,501,900 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lman2l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247492,616,336 - 2,637,305 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247492,616,336 - 2,639,250 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000035892   ⟹   ENSPPAP00000013222
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2A97,628,021 - 97,661,745 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000035897   ⟹   ENSPPAP00000013227
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2A97,634,144 - 97,661,699 (-)Ensembl
RefSeq Acc Id: XM_003805742   ⟹   XP_003805790
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21231,567,631 - 31,601,803 (+)NCBI
NHGRI_mPanPan12A31,570,393 - 31,605,872 (+)NCBI
Mhudiblu_PPA_v02A102,573,899 - 102,608,066 (+)NCBI
PanPan1.12A97,628,021 - 97,661,745 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034953744   ⟹   XP_034809635
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21231,567,654 - 31,601,803 (+)NCBI
NHGRI_mPanPan12A31,570,428 - 31,604,574 (+)NCBI
Mhudiblu_PPA_v02A102,573,920 - 102,608,066 (+)NCBI
RefSeq Acc Id: XM_055107648   ⟹   XP_054963623
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21231,569,652 - 31,601,803 (+)NCBI
NHGRI_mPanPan12A31,572,413 - 31,605,872 (+)NCBI
RefSeq Acc Id: XM_063594793   ⟹   XP_063450863
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21231,567,654 - 31,601,803 (+)NCBI
RefSeq Acc Id: XM_063594794   ⟹   XP_063450864
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21231,569,651 - 31,601,803 (+)NCBI
RefSeq Acc Id: XM_063594795   ⟹   XP_063450865
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21231,569,651 - 31,601,803 (+)NCBI
RefSeq Acc Id: XM_063594796   ⟹   XP_063450866
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21231,569,651 - 31,601,803 (+)NCBI
RefSeq Acc Id: XM_063594797   ⟹   XP_063450867
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21231,569,652 - 31,601,803 (+)NCBI
RefSeq Acc Id: XP_003805790   ⟸   XM_003805742
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_034809635   ⟸   XM_034953744
- Peptide Label: isoform X2
Ensembl Acc Id: ENSPPAP00000013227   ⟸   ENSPPAT00000035897
Ensembl Acc Id: ENSPPAP00000013222   ⟸   ENSPPAT00000035892
RefSeq Acc Id: XP_054963623   ⟸   XM_055107648
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063450863   ⟸   XM_063594793
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063450864   ⟸   XM_063594794
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063450865   ⟸   XM_063594795
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063450866   ⟸   XM_063594796
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063450867   ⟸   XM_063594797
- Peptide Label: isoform X5
Protein Domains
L-type lectin-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000029796 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000035892.1 UniProtKB/TrEMBL
  ENSPPAT00000035897.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.200 UniProtKB/TrEMBL
InterPro ConA-like_dom_sf UniProtKB/TrEMBL
  Intracellular_Lectin-GPT UniProtKB/TrEMBL
  Lectin_leg UniProtKB/TrEMBL
KEGG Report pps:100980087 UniProtKB/TrEMBL
NCBI Gene LMAN2L ENTREZGENE
PANTHER VESICULAR MANNOSE-BINDING LECTIN UniProtKB/TrEMBL
  VIP36-LIKE PROTEIN UniProtKB/TrEMBL
Pfam Lectin_leg-like UniProtKB/TrEMBL
PROSITE L_LECTIN_LIKE UniProtKB/TrEMBL
Superfamily-SCOP SSF49899 UniProtKB/TrEMBL
UniProt A0A2R9ACM9_PANPA UniProtKB/TrEMBL
  A0A2R9ACN3_PANPA UniProtKB/TrEMBL