SAMD4A (sterile alpha motif domain containing 4A) - Rat Genome Database

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Gene: SAMD4A (sterile alpha motif domain containing 4A) Pan paniscus
Analyze
Symbol: SAMD4A
Name: sterile alpha motif domain containing 4A
RGD ID: 11858298
Description: ENCODES a protein that exhibits mRNA binding (inferred); RNA binding (inferred); translation repressor activity (inferred); INVOLVED IN positive regulation of translation (ortholog); regulation of postsynapse assembly (ortholog); ASSOCIATED WITH DOPA-responsive dystonia (ortholog); head and neck squamous cell carcinoma (ortholog); substance-related disorder (ortholog); FOUND IN glutamatergic synapse (ortholog); postsynaptic density (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21555,687,572 - 55,914,688 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11454,904,045 - 55,131,198 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01435,153,002 - 35,380,018 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11453,432,110 - 53,658,531 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1453,566,636 - 53,654,151 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SAMD4A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21555,687,572 - 55,914,688 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11454,904,045 - 55,131,198 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01435,153,002 - 35,380,018 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11453,432,110 - 53,658,531 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1453,566,636 - 53,654,151 (+)Ensemblpanpan1.1panPan2
SAMD4A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381454,565,316 - 54,793,315 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1454,566,117 - 54,793,315 (+)EnsemblGRCh38hg38GRCh38
GRCh371455,033,846 - 55,260,033 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361454,104,387 - 54,325,595 (+)NCBINCBI36Build 36hg18NCBI36
Build 341454,104,386 - 54,325,595NCBI
Celera1435,084,168 - 35,309,486 (+)NCBICelera
Cytogenetic Map14q22.2NCBI
HuRef1435,197,040 - 35,422,619 (+)NCBIHuRef
CHM1_11454,973,048 - 55,198,669 (+)NCBICHM1_1
T2T-CHM13v2.01448,771,187 - 48,998,510 (+)NCBIT2T-CHM13v2.0
Samd4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391447,120,414 - 47,343,274 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1447,120,311 - 47,343,272 (+)EnsemblGRCm39 Ensembl
GRCm381446,882,965 - 47,105,817 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1446,882,854 - 47,105,815 (+)EnsemblGRCm38mm10GRCm38
MGSCv371447,502,640 - 47,725,492 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361445,804,844 - 46,024,079 (+)NCBIMGSCv36mm8
MGSCv361438,712,160 - 38,932,128 (+)NCBIMGSCv36mm8
Celera1443,056,646 - 43,281,638 (+)NCBICelera
Cytogenetic Map14C1NCBI
cM Map1424.41NCBI
Samd4a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81522,616,200 - 22,831,872 (+)NCBIGRCr8
mRatBN7.21520,135,994 - 20,352,131 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1520,134,377 - 20,348,380 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1523,028,162 - 23,132,762 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01523,986,142 - 24,090,738 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01522,236,621 - 22,342,037 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01523,666,543 - 23,879,067 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1523,665,202 - 23,878,539 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01527,721,129 - 27,820,974 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41522,847,701 - 22,952,499 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11522,749,949 - 22,967,670 (+)NCBI
Celera1520,645,446 - 20,745,819 (+)NCBICelera
Cytogenetic Map15p14NCBI
Samd4a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554098,712,061 - 8,916,816 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554098,716,432 - 8,916,398 (-)NCBIChiLan1.0ChiLan1.0
SAMD4A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1830,476,425 - 30,687,240 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl830,476,418 - 30,687,240 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha830,243,508 - 30,455,649 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0830,732,570 - 30,943,425 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl830,732,557 - 30,945,114 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1830,336,559 - 30,547,600 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0830,412,983 - 30,623,593 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0830,778,494 - 30,989,083 (+)NCBIUU_Cfam_GSD_1.0
Samd4a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864074,558,422 - 74,768,804 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936697336,981 - 541,150 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936697332,577 - 543,748 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SAMD4A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1183,915,512 - 184,140,115 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11183,915,337 - 184,140,122 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21204,436,496 - 204,645,195 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SAMD4A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12431,743,735 - 31,976,009 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2431,743,560 - 31,976,053 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605319,971,620 - 20,214,772 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Samd4a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473114,537,065 - 14,742,406 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473114,537,063 - 14,744,703 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008957052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034937577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034937578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034937579 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034937580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034937581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034937582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034937583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034937584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055097604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055097606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_057299700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063596213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063596214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063596215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063596216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063596217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063596218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063596219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063596220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063596221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063596222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSPPAT00000057548   ⟹   ENSPPAP00000034665
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1453,566,636 - 53,654,151 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000057562   ⟹   ENSPPAP00000034679
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1453,566,636 - 53,654,151 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000057571   ⟹   ENSPPAP00000034688
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1453,566,729 - 53,654,151 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000057574   ⟹   ENSPPAP00000034691
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1453,625,519 - 53,654,151 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000057581   ⟹   ENSPPAP00000034698
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1453,625,930 - 53,654,151 (+)Ensembl
RefSeq Acc Id: XM_055097604   ⟹   XP_054953579
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21555,687,577 - 55,914,688 (+)NCBI
NHGRI_mPanPan11454,904,045 - 55,131,198 (+)NCBI
RefSeq Acc Id: XM_055097606   ⟹   XP_054953581
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21555,687,577 - 55,914,688 (+)NCBI
NHGRI_mPanPan11454,904,077 - 55,131,198 (+)NCBI
RefSeq Acc Id: XM_057299700   ⟹   XP_057155683
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21555,688,710 - 55,914,688 (+)NCBI
NHGRI_mPanPan11454,905,137 - 55,131,198 (+)NCBI
RefSeq Acc Id: XM_063596213   ⟹   XP_063452283
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21555,687,577 - 55,914,688 (+)NCBI
RefSeq Acc Id: XM_063596214   ⟹   XP_063452284
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21555,688,620 - 55,914,688 (+)NCBI
RefSeq Acc Id: XM_063596215   ⟹   XP_063452285
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21555,688,723 - 55,914,688 (+)NCBI
RefSeq Acc Id: XM_063596216   ⟹   XP_063452286
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21555,687,572 - 55,914,688 (+)NCBI
RefSeq Acc Id: XM_063596217   ⟹   XP_063452287
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21555,688,620 - 55,914,688 (+)NCBI
RefSeq Acc Id: XM_063596218   ⟹   XP_063452288
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21555,687,577 - 55,914,688 (+)NCBI
RefSeq Acc Id: XM_063596219   ⟹   XP_063452289
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21555,688,620 - 55,914,688 (+)NCBI
RefSeq Acc Id: XM_063596220   ⟹   XP_063452290
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21555,688,193 - 55,914,688 (+)NCBI
RefSeq Acc Id: XM_063596221   ⟹   XP_063452291
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21555,688,620 - 55,914,688 (+)NCBI
RefSeq Acc Id: XM_063596222   ⟹   XP_063452292
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21555,688,636 - 55,914,688 (+)NCBI
Ensembl Acc Id: ENSPPAP00000034679   ⟸   ENSPPAT00000057562
Ensembl Acc Id: ENSPPAP00000034688   ⟸   ENSPPAT00000057571
Ensembl Acc Id: ENSPPAP00000034691   ⟸   ENSPPAT00000057574
Ensembl Acc Id: ENSPPAP00000034698   ⟸   ENSPPAT00000057581
Ensembl Acc Id: ENSPPAP00000034665   ⟸   ENSPPAT00000057548
RefSeq Acc Id: XP_054953579   ⟸   XM_055097604
- Peptide Label: isoform X1
- UniProtKB: A0A2R9C1L4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054953581   ⟸   XM_055097606
- Peptide Label: isoform X5
- UniProtKB: A0A2R9C8C9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_057155683   ⟸   XM_057299700
- Peptide Label: isoform X3
- UniProtKB: A0A2R9BYD0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063452286   ⟸   XM_063596216
- Peptide Label: isoform X3
- UniProtKB: A0A2R9BYD0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063452283   ⟸   XM_063596213
- Peptide Label: isoform X2
- UniProtKB: A0A2R9C1L4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063452288   ⟸   XM_063596218
- Peptide Label: isoform X4
- UniProtKB: A0A2R9C8C9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063452290   ⟸   XM_063596220
- Peptide Label: isoform X4
- UniProtKB: A0A2R9C8C9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063452284   ⟸   XM_063596214
- Peptide Label: isoform X2
- UniProtKB: A0A2R9C1L4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063452287   ⟸   XM_063596217
- Peptide Label: isoform X3
- UniProtKB: A0A2R9BYD0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063452289   ⟸   XM_063596219
- Peptide Label: isoform X4
- UniProtKB: A0A2R9C8C9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063452291   ⟸   XM_063596221
- Peptide Label: isoform X5
- UniProtKB: A0A2R9C8C9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063452292   ⟸   XM_063596222
- Peptide Label: isoform X5
- UniProtKB: A0A2R9C8C9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063452285   ⟸   XM_063596215
- Peptide Label: isoform X2
- UniProtKB: A0A2R9C1L4 (UniProtKB/TrEMBL)
Protein Domains
SAM


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000040127 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000057548.1 UniProtKB/TrEMBL
  ENSPPAT00000057562.1 UniProtKB/TrEMBL
  ENSPPAT00000057571.1 UniProtKB/TrEMBL
  ENSPPAT00000057574.1 UniProtKB/TrEMBL
  ENSPPAT00000057581.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.150.50 UniProtKB/TrEMBL
  1.25.40.170 UniProtKB/TrEMBL
InterPro PHAT_dom_sf UniProtKB/TrEMBL
  SAM UniProtKB/TrEMBL
  SAM/pointed_sf UniProtKB/TrEMBL
  SMAUG/VTS1_RNA-bind UniProtKB/TrEMBL
  Smaug_SAM UniProtKB/TrEMBL
NCBI Gene SAMD4A ENTREZGENE
PANTHER PROTEIN SMAUG HOMOLOG 1 UniProtKB/TrEMBL
  STERILE ALPHA MOTIF DOMAIN CONTAINING PROTEIN 4-RELATED UniProtKB/TrEMBL
Pfam SAM_1 UniProtKB/TrEMBL
SMART SAM UniProtKB/TrEMBL
Superfamily-SCOP SSF47769 UniProtKB/TrEMBL
UniProt A0A2R9BYD0 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9BYE1_PANPA UniProtKB/TrEMBL
  A0A2R9BYY9_PANPA UniProtKB/TrEMBL
  A0A2R9C1L4 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9C8C9 ENTREZGENE, UniProtKB/TrEMBL