CLEC17A (C-type lectin domain containing 17A) - Rat Genome Database

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Gene: CLEC17A (C-type lectin domain containing 17A) Pan paniscus
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Symbol: CLEC17A
Name: C-type lectin domain containing 17A
RGD ID: 11855601
Description: ENCODES a protein that exhibits carbohydrate binding (inferred); D-mannose binding (inferred); fucose binding (inferred); FOUND IN cell surface (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: C-type lectin domain family 17 member A; C-type lectin domain family 17, member A
RGD Orthologs
Human
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22019,512,559 - 19,542,542 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11918,514,731 - 18,544,736 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01914,146,116 - 14,176,421 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11914,989,293 - 15,020,932 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1914,992,156 - 15,020,724 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cell surface  (IEA)
membrane  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CLEC17A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22019,512,559 - 19,542,542 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11918,514,731 - 18,544,736 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01914,146,116 - 14,176,421 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11914,989,293 - 15,020,932 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1914,992,156 - 15,020,724 (+)Ensemblpanpan1.1panPan2
CLEC17A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381914,580,951 - 14,612,035 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1914,583,084 - 14,612,035 (+)EnsemblGRCh38hg38GRCh38
GRCh371914,693,896 - 14,722,847 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361914,554,896 - 14,582,951 (+)NCBINCBI36Build 36hg18NCBI36
Celera1914,585,844 - 14,615,105 (+)NCBICelera
Cytogenetic Map19p13.12NCBI
HuRef1914,276,135 - 14,290,440 (+)NCBIHuRef
HuRef1914,263,454 - 14,275,150 (+)NCBIHuRef
CHM1_11914,694,776 - 14,723,072 (+)NCBICHM1_1
T2T-CHM13v2.01914,709,830 - 14,740,103 (+)NCBIT2T-CHM13v2.0
Clec17a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541531,715,870 - 31,738,131 (-)NCBIChiLan1.0ChiLan1.0
CLEC17A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12048,066,575 - 48,079,632 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2047,943,292 - 47,956,351 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02048,583,636 - 48,596,773 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2048,586,295 - 48,596,772 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12047,797,824 - 47,810,830 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02048,223,828 - 48,236,894 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02048,466,709 - 48,480,054 (-)NCBIUU_Cfam_GSD_1.0
Clec17a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118207,248,221 - 207,258,047 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049366593,097,238 - 3,106,455 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLEC17A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl264,689,043 - 64,706,131 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1264,689,042 - 64,706,136 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2265,063,003 - 65,080,086 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CLEC17A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1613,241,290 - 13,263,254 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl613,241,577 - 13,262,057 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660746,344,877 - 6,413,437 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Clec17a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624901232,788 - 273,913 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000048191   ⟹   ENSPPAP00000025364
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1914,992,156 - 15,020,724 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000048199   ⟹   ENSPPAP00000025372
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1914,992,156 - 15,020,618 (+)Ensembl
RefSeq Acc Id: XM_034945076   ⟹   XP_034800967
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22019,512,559 - 19,542,542 (+)NCBI
NHGRI_mPanPan11918,514,731 - 18,544,736 (+)NCBI
Mhudiblu_PPA_v01914,146,116 - 14,176,421 (+)NCBI
RefSeq Acc Id: XM_034945080   ⟹   XP_034800971
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22019,512,559 - 19,542,542 (+)NCBI
NHGRI_mPanPan11918,514,731 - 18,544,736 (+)NCBI
Mhudiblu_PPA_v01914,146,116 - 14,175,223 (+)NCBI
RefSeq Acc Id: XM_063599970   ⟹   XP_063456040
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22019,512,577 - 19,535,101 (+)NCBI
RefSeq Acc Id: XM_063599971   ⟹   XP_063456041
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22019,512,577 - 19,535,101 (+)NCBI
RefSeq Acc Id: XM_063599972   ⟹   XP_063456042
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22019,512,577 - 19,535,101 (+)NCBI
RefSeq Acc Id: XM_063599973   ⟹   XP_063456043
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22019,512,589 - 19,535,101 (+)NCBI
RefSeq Acc Id: XM_063599974   ⟹   XP_063456044
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22019,512,587 - 19,535,101 (+)NCBI
RefSeq Acc Id: XP_034800967   ⟸   XM_034945076
- Peptide Label: isoform X2
- UniProtKB: A0A2R9BEA3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034800971   ⟸   XM_034945080
- Peptide Label: isoform X7
- UniProtKB: A0A2R9B708 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSPPAP00000025364   ⟸   ENSPPAT00000048191
Ensembl Acc Id: ENSPPAP00000025372   ⟸   ENSPPAT00000048199
RefSeq Acc Id: XP_063456040   ⟸   XM_063599970
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063456041   ⟸   XM_063599971
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063456042   ⟸   XM_063599972
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063456044   ⟸   XM_063599974
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063456043   ⟸   XM_063599973
- Peptide Label: isoform X5
Protein Domains
C-type lectin


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000035812 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000048191.1 UniProtKB/TrEMBL
  ENSPPAT00000048199.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.100.10 UniProtKB/TrEMBL
InterPro C-type_lectin-like UniProtKB/TrEMBL
  C-type_lectin-like/link_sf UniProtKB/TrEMBL
  C-type_lectin/matrix_domain UniProtKB/TrEMBL
  C-type_lectin_CS UniProtKB/TrEMBL
  CD209-like_CTLD UniProtKB/TrEMBL
  CTDL_fold UniProtKB/TrEMBL
  DC-SIGN_domain-containing UniProtKB/TrEMBL
NCBI Gene CLEC17A ENTREZGENE
PANTHER C-TYPE LECTIN DOMAIN FAMILY 17, MEMBER A UniProtKB/TrEMBL
  C-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 180 UniProtKB/TrEMBL
  C-TYPE LECTIN SUPERFAMILY MEMBER UniProtKB/TrEMBL
  FI15750P1-RELATED UniProtKB/TrEMBL
Pfam Lectin_C UniProtKB/TrEMBL
PROSITE C_TYPE_LECTIN_1 UniProtKB/TrEMBL
  C_TYPE_LECTIN_2 UniProtKB/TrEMBL
SMART CLECT UniProtKB/TrEMBL
Superfamily-SCOP SSF56436 UniProtKB/TrEMBL
UniProt A0A2R9B708 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9BEA3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-03-28 CLEC17A  C-type lectin domain containing 17A    C-type lectin domain family 17 member A  Symbol and/or name change 5135510 APPROVED