MANBA (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 3 | 100,715,092 - 100,844,606 (-) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 4 | 101,001,618 - 101,131,136 (-) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 4 | 95,055,206 - 95,184,727 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 4 | 105,718,176 - 105,846,251 (-) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 4 | 105,718,124 - 105,846,251 (-) | Ensembl | panpan1.1 | | panPan2 | |
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MANBA (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 4 | 102,630,770 - 102,760,968 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 4 | 102,630,770 - 102,760,994 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 4 | 103,551,927 - 103,682,125 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 4 | 103,771,691 - 103,901,196 (-) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Build 34 | 4 | 103,909,850 - 104,039,341 | NCBI | | | | | Celera | 4 | 100,851,923 - 100,981,403 (-) | NCBI | | Celera | | | Cytogenetic Map | 4 | q24 | NCBI | | | | | HuRef | 4 | 99,288,756 - 99,418,261 (-) | NCBI | | HuRef | | | CHM1_1 | 4 | 103,528,967 - 103,658,610 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 4 | 105,944,714 - 106,074,870 (-) | NCBI | | T2T-CHM13v2.0 | | |
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Manba (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 3 | 135,191,367 - 135,277,165 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 3 | 135,191,372 - 135,277,165 (+) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 3 | 135,485,611 - 135,571,404 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 3 | 135,485,611 - 135,571,404 (+) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 3 | 135,148,575 - 135,234,368 (+) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 3 | 135,423,055 - 135,508,791 (+) | NCBI | | MGSCv36 | mm8 | | Celera | 3 | 141,900,054 - 141,991,576 (+) | NCBI | | Celera | | | Cytogenetic Map | 3 | G3 | NCBI | | | | | cM Map | 3 | 62.65 | NCBI | | | | |
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Manba (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 2 | 226,583,968 - 226,676,520 (+) | NCBI | | GRCr8 | | | mRatBN7.2 | 2 | 223,910,432 - 224,002,988 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 2 | 223,910,432 - 224,002,983 (+) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 2 | 231,635,810 - 231,734,245 (+) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 2 | 229,535,549 - 229,633,977 (+) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 2 | 224,400,334 - 224,498,764 (+) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 2 | 240,668,213 - 240,760,264 (+) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 2 | 240,668,195 - 240,760,261 (+) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 2 | 259,187,111 - 259,227,267 (+) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | Rnor_5.0 | 2 | 259,281,496 - 259,317,121 (+) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 2 | 232,983,989 - 233,077,788 (+) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | RGSC_v3.1 | 2 | 233,032,256 - 233,064,521 (+) | NCBI | | | | | Celera | 2 | 216,118,587 - 216,213,623 (+) | NCBI | | Celera | | | Cytogenetic Map | 2 | q43 | NCBI | | | | |
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Manba (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955496 | 5,744,250 - 5,841,293 (+) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955496 | 5,744,374 - 5,837,974 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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MANBA (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 32 | 24,052,078 - 24,167,565 (-) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 32 | 24,038,920 - 24,167,535 (-) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 32 | 17,856,745 - 17,971,441 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 32 | 24,271,881 - 24,386,916 (-) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 32 | 24,271,886 - 24,386,953 (-) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 32 | 24,251,773 - 24,404,094 (-) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 32 | 24,031,263 - 24,147,488 (-) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 32 | 15,715,565 - 15,830,821 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
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Manba (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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MANBA (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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Sscrofa11.1 Ensembl | 8 | 118,251,106 - 118,361,903 (+) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 8 | 118,251,122 - 118,361,903 (+) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 8 | 127,225,147 - 127,302,034 (+) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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MANBA (Chlorocebus sabaeus - green monkey) |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChlSab1.1 | 7 | 50,725,249 - 50,860,041 (-) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 7 | 50,725,248 - 50,859,995 (-) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666037 | 29,236,817 - 29,371,373 (-) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Manba (Heterocephalus glaber - naked mole-rat) |
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