ATP6V1C1 (ATPase H+ transporting V1 subunit C1) - Rat Genome Database

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Gene: ATP6V1C1 (ATPase H+ transporting V1 subunit C1) Pan paniscus
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Symbol: ATP6V1C1
Name: ATPase H+ transporting V1 subunit C1
RGD ID: 11841235
Description: ENCODES a protein that exhibits proton-transporting ATPase activity, rotational mechanism (inferred); INVOLVED IN proton transmembrane transport (inferred); synaptic vesicle lumen acidification (inferred); ASSOCIATED WITH Cohen syndrome (ortholog); DOORS syndrome (ortholog); Neoplasm Metastasis (ortholog); FOUND IN apical part of cell (ortholog); extrinsic component of synaptic vesicle membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC106635061; uncharacterized LOC106635061; V-type proton ATPase subunit C 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27120,231,629 - 120,435,575 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1895,767,545 - 95,971,505 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0899,521,146 - 99,725,603 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18101,832,538 - 101,883,956 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8101,832,538 - 101,883,956 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ATP6V1C1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27120,231,629 - 120,435,575 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1895,767,545 - 95,971,505 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0899,521,146 - 99,725,603 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18101,832,538 - 101,883,956 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8101,832,538 - 101,883,956 (+)Ensemblpanpan1.1panPan2
ATP6V1C1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388103,021,083 - 103,073,051 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8103,021,063 - 103,073,051 (+)EnsemblGRCh38hg38GRCh38
GRCh378104,033,311 - 104,085,279 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 368104,102,424 - 104,154,461 (+)NCBINCBI36Build 36hg18NCBI36
Build 348104,102,444 - 104,154,460NCBI
Celera8100,220,060 - 100,272,082 (+)NCBICelera
Cytogenetic Map8q22.3NCBI
HuRef899,233,896 - 99,286,052 (+)NCBIHuRef
CHM1_18104,074,301 - 104,126,315 (+)NCBICHM1_1
T2T-CHM13v2.08104,149,047 - 104,200,988 (+)NCBIT2T-CHM13v2.0
Atp6v1c1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391538,662,096 - 38,692,688 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1538,662,177 - 38,692,690 (+)EnsemblGRCm39 Ensembl
GRCm381538,661,904 - 38,692,444 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1538,661,933 - 38,692,446 (+)EnsemblGRCm38mm10GRCm38
MGSCv371538,591,659 - 38,622,199 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361538,606,543 - 38,636,472 (+)NCBIMGSCv36mm8
Celera1539,288,003 - 39,318,453 (+)NCBICelera
Cytogenetic Map15B3.1NCBI
cM Map1515.18NCBI
Atp6v1c1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8771,719,326 - 71,757,191 (+)NCBIGRCr8
mRatBN7.2769,834,464 - 69,872,278 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl769,834,463 - 69,872,278 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx771,706,991 - 71,744,745 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0773,909,580 - 73,947,333 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0773,777,596 - 73,815,355 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0777,678,853 - 77,716,658 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl777,678,968 - 77,716,408 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0778,536,306 - 78,574,105 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4774,341,301 - 74,378,806 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1774,362,030 - 74,399,537 (+)NCBI
Celera766,891,594 - 66,929,033 (+)NCBICelera
Cytogenetic Map7q22NCBI
Atp6v1c1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541727,356,483 - 27,375,747 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541727,340,916 - 27,376,541 (+)NCBIChiLan1.0ChiLan1.0
ATP6V1C1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1134,509,699 - 4,569,500 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl134,510,003 - 4,579,846 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha134,513,182 - 4,573,038 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0134,672,415 - 4,733,419 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl134,672,804 - 4,761,969 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1134,514,303 - 4,574,155 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0134,631,627 - 4,691,637 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0134,644,765 - 4,704,650 (+)NCBIUU_Cfam_GSD_1.0
Atp6v1c1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530333,200,336 - 33,249,336 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647040,623,553 - 40,675,598 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647040,626,523 - 40,675,435 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP6V1C1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl434,029,295 - 34,222,405 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1434,033,943 - 34,084,990 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2436,887,066 - 36,917,862 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATP6V1C1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1897,878,970 - 97,930,552 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl897,879,019 - 97,926,263 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603942,670,781 - 42,722,372 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atp6v1c1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476319,726,841 - 19,769,372 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476319,726,883 - 19,769,247 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000036826   ⟹   ENSPPAP00000014148
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl8101,832,538 - 101,883,956 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000036838   ⟹   ENSPPAP00000014160
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl8101,859,698 - 101,880,249 (+)Ensembl
RefSeq Acc Id: XM_003821728   ⟹   XP_003821776
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v27120,387,267 - 120,435,575 (+)NCBI
NHGRI_mPanPan1895,923,250 - 95,971,505 (+)NCBI
Mhudiblu_PPA_v0899,677,069 - 99,725,603 (+)NCBI
PanPan1.18101,832,538 - 101,883,956 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034966453   ⟹   XP_034822344
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v27120,231,629 - 120,435,575 (+)NCBI
NHGRI_mPanPan1895,767,545 - 95,971,505 (+)NCBI
Mhudiblu_PPA_v0899,521,146 - 99,725,603 (+)NCBI
RefSeq Acc Id: XM_034966454   ⟹   XP_034822345
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v27120,387,334 - 120,435,575 (+)NCBI
NHGRI_mPanPan1895,923,276 - 95,971,505 (+)NCBI
Mhudiblu_PPA_v0899,677,408 - 99,725,603 (+)NCBI
Protein Sequences
Protein RefSeqs XP_003821776 (Get FASTA)   NCBI Sequence Viewer  
  XP_034822344 (Get FASTA)   NCBI Sequence Viewer  
  XP_034822345 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000014148
  ENSPPAP00000014148.1
  ENSPPAP00000014160.1
RefSeq Acc Id: XP_003821776   ⟸   XM_003821728
- UniProtKB: A0A2R9AF38 (UniProtKB/TrEMBL),   A0A2R9AA70 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034822344   ⟸   XM_034966453
- UniProtKB: A0A2R9AF38 (UniProtKB/TrEMBL),   A0A2R9AA70 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034822345   ⟸   XM_034966454
- UniProtKB: A0A2R9AF38 (UniProtKB/TrEMBL),   A0A2R9AA70 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSPPAP00000014160   ⟸   ENSPPAT00000036838
Ensembl Acc Id: ENSPPAP00000014148   ⟸   ENSPPAT00000036826


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000030212 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000036826.1 UniProtKB/TrEMBL
  ENSPPAT00000036838.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.100 UniProtKB/TrEMBL
  subunit c (vma5p) of the yeast v-atpase, domain 2 UniProtKB/TrEMBL
InterPro ATPase_V1-cplx_csu UniProtKB/TrEMBL
  Vac_ATP_synth_c_sf UniProtKB/TrEMBL
KEGG Report pps:100979388 UniProtKB/TrEMBL
NCBI Gene ATP6V1C1 ENTREZGENE
PANTHER PTHR10137 UniProtKB/TrEMBL
  V-TYPE PROTON ATPASE SUBUNIT C 1 UniProtKB/TrEMBL
Pfam V-ATPase_C UniProtKB/TrEMBL
Superfamily-SCOP SSF118203 UniProtKB/TrEMBL
UniProt A0A2R9AA70 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9AF38 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-06-11 ATP6V1C1  ATPase H+ transporting V1 subunit C1  LOC106635061  uncharacterized LOC106635061  Data merged from RGD:11897627 737654 PROVISIONAL