WIPI1 (WD repeat domain, phosphoinositide interacting 1) - Rat Genome Database

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Gene: WIPI1 (WD repeat domain, phosphoinositide interacting 1) Pan paniscus
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Symbol: WIPI1
Name: WD repeat domain, phosphoinositide interacting 1
RGD ID: 11836636
Description: ENCODES a protein that exhibits lipid binding (inferred); nuclear androgen receptor binding (inferred); nuclear estrogen receptor binding (inferred); INVOLVED IN autophagosome assembly (inferred); autophagy (inferred); cellular response to starvation (inferred); ASSOCIATED WITH cholestasis (ortholog); lipid storage disease (ortholog); neural tube defect (ortholog); FOUND IN autophagosome membrane (inferred); cytoplasm (inferred); cytosol (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: WD repeat domain phosphoinositide-interacting protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21984,449,415 - 84,486,108 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11789,270,536 - 89,307,191 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01762,357,952 - 62,394,620 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11767,748,201 - 67,784,313 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1767,748,201 - 67,784,389 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
WIPI1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21984,449,415 - 84,486,108 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11789,270,536 - 89,307,191 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01762,357,952 - 62,394,620 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11767,748,201 - 67,784,313 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1767,748,201 - 67,784,389 (-)Ensemblpanpan1.1panPan2
WIPI1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381768,421,281 - 68,457,496 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1768,420,948 - 68,457,513 (-)EnsemblGRCh38hg38GRCh38
GRCh371766,417,422 - 66,453,637 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361763,929,017 - 63,965,248 (-)NCBINCBI36Build 36hg18NCBI36
Celera1762,988,989 - 63,025,394 (-)NCBICelera
Cytogenetic Map17q24.2NCBI
HuRef1761,803,259 - 61,839,657 (-)NCBIHuRef
CHM1_11766,482,061 - 66,518,186 (-)NCBICHM1_1
T2T-CHM13v2.01769,297,798 - 69,334,178 (-)NCBIT2T-CHM13v2.0
Wipi1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911109,464,347 - 109,502,215 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11109,464,157 - 109,502,793 (-)EnsemblGRCm39 Ensembl
GRCm3811109,573,521 - 109,611,389 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11109,573,331 - 109,611,967 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711109,434,835 - 109,472,703 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611109,389,611 - 109,427,479 (-)NCBIMGSCv36mm8
Celera11121,311,520 - 121,349,584 (-)NCBICelera
Cytogenetic Map11E1NCBI
cM Map1172.18NCBI
Wipi1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81095,042,451 - 95,079,679 (-)NCBIGRCr8
mRatBN7.21094,542,946 - 94,580,174 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1094,542,946 - 94,579,846 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1099,600,580 - 99,637,322 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01099,063,654 - 99,100,399 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01094,473,833 - 94,510,401 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01097,859,730 - 97,896,949 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1097,859,727 - 97,896,525 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01097,578,114 - 97,614,772 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41098,722,266 - 98,753,713 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11098,736,531 - 98,768,083 (+)NCBI
Celera1093,202,993 - 93,239,541 (-)NCBICelera
Cytogenetic Map10q32.1NCBI
Wipi1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554784,309,880 - 4,343,934 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554784,309,975 - 4,341,107 (+)NCBIChiLan1.0ChiLan1.0
WIPI1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1915,115,098 - 15,147,893 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl915,115,315 - 15,149,147 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha916,007,598 - 16,040,393 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0916,777,725 - 16,810,214 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl916,777,726 - 16,810,216 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1915,722,376 - 15,755,139 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0911,778,126 - 11,810,866 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0911,778,427 - 11,811,230 (+)NCBIUU_Cfam_GSD_1.0
Wipi1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560211,382,450 - 11,411,762 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365417,783,322 - 7,812,054 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365417,782,836 - 7,812,142 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WIPI1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1211,715,318 - 11,752,021 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11211,715,332 - 11,752,009 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21212,181,684 - 12,218,356 (+)NCBISscrofa10.2Sscrofa10.2susScr3
WIPI1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11653,096,027 - 53,133,828 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1653,096,023 - 53,135,010 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607724,024,610 - 24,063,523 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Wipi1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248703,486,375 - 3,518,193 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248703,487,814 - 3,518,206 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000062048   ⟹   ENSPPAP00000039139
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1767,748,201 - 67,784,389 (-)Ensembl
RefSeq Acc Id: XM_003808934   ⟹   XP_003808982
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21984,449,415 - 84,486,101 (-)NCBI
NHGRI_mPanPan11789,270,536 - 89,307,179 (-)NCBI
Mhudiblu_PPA_v01762,357,952 - 62,394,620 (-)NCBI
PanPan1.11767,748,201 - 67,784,313 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008961083   ⟹   XP_008959331
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21984,449,415 - 84,486,108 (-)NCBI
NHGRI_mPanPan11789,270,536 - 89,307,191 (-)NCBI
Mhudiblu_PPA_v01762,357,952 - 62,394,613 (-)NCBI
PanPan1.11767,748,201 - 67,784,313 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003808982 (Get FASTA)   NCBI Sequence Viewer  
  XP_008959331 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000039139.1
RefSeq Acc Id: XP_003808982   ⟸   XM_003808934
- Peptide Label: isoform X2
- UniProtKB: A0A2R9CB83 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008959331   ⟸   XM_008961083
- Peptide Label: isoform X1
- UniProtKB: A0A2R9CB83 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSPPAP00000039139   ⟸   ENSPPAT00000062048


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000042279 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000062048.1 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
InterPro PROPPIN UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
NCBI Gene WIPI1 ENTREZGENE
PANTHER WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED UniProtKB/TrEMBL
Pfam PROPPIN UniProtKB/TrEMBL
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/TrEMBL
UniProt A0A2R9CB83 ENTREZGENE, UniProtKB/TrEMBL