SAP30L (SAP30 like) - Rat Genome Database

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Gene: SAP30L (SAP30 like) Pan paniscus
Analyze
Symbol: SAP30L
Name: SAP30 like
RGD ID: 11831607
Description: ENCODES a protein that exhibits phosphatidylinositol-3-phosphate binding (ortholog); phosphatidylinositol-4-phosphate binding (ortholog); INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); polycystic ovary syndrome (ortholog); FOUND IN fibrillar center (inferred); histone deacetylase complex (inferred); nucleolus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: histone deacetylase complex subunit SAP30L; histone deacetylase complex subunit SAP30L-like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24149,653,189 - 149,668,266 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15147,792,734 - 147,807,812 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05149,847,937 - 149,863,052 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15155,846,056 - 155,861,300 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5155,846,866 - 155,856,273 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SAP30L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24149,653,189 - 149,668,266 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15147,792,734 - 147,807,812 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05149,847,937 - 149,863,052 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15155,846,056 - 155,861,300 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5155,846,866 - 155,856,273 (+)Ensemblpanpan1.1panPan2
SAP30L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385154,445,997 - 154,461,053 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5154,445,997 - 154,461,053 (+)EnsemblGRCh38hg38GRCh38
GRCh375153,825,557 - 153,840,613 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365153,805,776 - 153,816,067 (+)NCBINCBI36Build 36hg18NCBI36
Celera5149,901,175 - 149,916,278 (+)NCBICelera
Cytogenetic Map5q33.2NCBI
HuRef5148,966,241 - 148,981,334 (+)NCBIHuRef
CHM1_15153,256,318 - 153,273,030 (+)NCBICHM1_1
T2T-CHM13v2.05154,979,944 - 154,995,012 (+)NCBIT2T-CHM13v2.0
Sap30l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391157,692,439 - 57,705,707 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1157,692,463 - 57,701,043 (+)EnsemblGRCm39 Ensembl
GRCm381157,801,637 - 57,810,615 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1157,801,637 - 57,810,217 (+)EnsemblGRCm38mm10GRCm38
MGSCv371157,615,139 - 57,624,117 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361157,617,832 - 57,626,810 (+)NCBIMGSCv36mm8
Celera1162,554,055 - 62,562,570 (+)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1135.27NCBI
Sap30l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81042,480,201 - 42,488,139 (+)NCBIGRCr8
mRatBN7.21041,979,730 - 41,992,307 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1041,979,687 - 41,987,658 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1046,642,271 - 46,650,201 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01046,132,533 - 46,140,459 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01041,636,157 - 41,644,084 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01043,224,151 - 43,231,864 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1043,224,269 - 43,231,611 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01043,023,126 - 43,031,220 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41043,396,414 - 43,404,655 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11043,410,173 - 43,418,013 (+)NCBI
Celera1041,271,789 - 41,279,601 (+)NCBICelera
Cytogenetic Map10q22NCBI
Sap30l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554088,827,738 - 8,832,588 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554088,827,744 - 8,832,588 (+)NCBIChiLan1.0ChiLan1.0
SAP30L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1455,247,912 - 55,261,655 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl455,252,938 - 55,262,207 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha455,139,143 - 55,152,822 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0455,682,409 - 55,696,086 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl455,687,428 - 55,696,091 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1455,512,820 - 55,526,494 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0455,611,261 - 55,624,938 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0456,113,840 - 56,127,525 (-)NCBIUU_Cfam_GSD_1.0
Sap30l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213109,856,463 - 109,870,339 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365158,305,799 - 8,319,685 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365158,305,809 - 8,319,685 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SAP30L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1668,695,900 - 68,709,742 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11668,695,892 - 68,709,952 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21674,604,899 - 74,619,284 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SAP30L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12356,900,806 - 56,916,238 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2356,900,843 - 56,916,259 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603420,747,414 - 20,762,855 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sap30l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473334,744,554 - 34,757,764 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473334,744,638 - 34,757,727 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_034960849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSPPAT00000052154   ⟹   ENSPPAP00000029305
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl5155,846,866 - 155,856,273 (+)Ensembl
RefSeq Acc Id: XM_034960849   ⟹   XP_034816740
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24149,653,189 - 149,668,266 (+)NCBI
NHGRI_mPanPan15147,792,734 - 147,807,812 (+)NCBI
Mhudiblu_PPA_v05149,847,937 - 149,863,052 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034816740 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000029305.1
RefSeq Acc Id: XP_034816740   ⟸   XM_034960849
- UniProtKB: A0A2R9BI22 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSPPAP00000029305   ⟸   ENSPPAT00000052154
Protein Domains
Histone deacetylase complex subunit SAP30 Sin3   Histone deacetylase complex subunit SAP30 zinc-


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000037666 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000052154.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.1800.30 UniProtKB/TrEMBL
  6.10.160.20 UniProtKB/TrEMBL
InterPro His_deAcase_SAP30/SAP30L UniProtKB/TrEMBL
  SAP30_C_sf UniProtKB/TrEMBL
  SAP30_Sin3-bd UniProtKB/TrEMBL
  SAP30_zn-finger UniProtKB/TrEMBL
NCBI Gene SAP30L ENTREZGENE
PANTHER HISTONE DEACETYLASE COMPLEX SUBUNIT SAP30L UniProtKB/TrEMBL
  PTHR13286 UniProtKB/TrEMBL
Pfam SAP30_Sin3_bdg UniProtKB/TrEMBL
  zf-SAP30 UniProtKB/TrEMBL
UniProt A0A2R9BI22 ENTREZGENE, UniProtKB/TrEMBL