CRYGN (crystallin gamma N) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: CRYGN (crystallin gamma N) Pan paniscus
Analyze
Symbol: CRYGN
Name: crystallin gamma N
RGD ID: 11827155
Description: ENCODES a protein that exhibits structural constituent of eye lens (inferred); INVOLVED IN lens development in camera-type eye (inferred); visual perception (inferred); ASSOCIATED WITH lethal congenital glycogen storage disease of heart (ortholog); long QT syndrome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: gamma-crystallin N
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26187,848,016 - 187,862,433 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1739,858,282 - 39,872,699 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07143,015,345 - 143,027,237 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17155,166,011 - 155,177,359 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7155,166,011 - 155,177,359 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CRYGN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26187,848,016 - 187,862,433 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1739,858,282 - 39,872,699 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07143,015,345 - 143,027,237 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17155,166,011 - 155,177,359 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7155,166,011 - 155,177,359 (-)Ensemblpanpan1.1panPan2
CRYGN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387151,428,832 - 151,440,813 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7151,428,832 - 151,440,813 (-)EnsemblGRCh38hg38GRCh38
GRCh377151,125,918 - 151,137,899 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367150,757,989 - 150,768,032 (-)NCBINCBI36Build 36hg18NCBI36
Build 347150,564,704 - 150,574,747NCBI
Celera7145,684,532 - 145,694,575 (-)NCBICelera
Cytogenetic Map7q36.1NCBI
HuRef7144,938,635 - 144,948,676 (-)NCBIHuRef
CHM1_17151,135,454 - 151,145,497 (-)NCBICHM1_1
T2T-CHM13v2.07152,601,666 - 152,613,647 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27150,456,639 - 150,466,682 (-)NCBI
Crygn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39524,956,000 - 24,962,846 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl524,956,001 - 24,963,006 (-)EnsemblGRCm39 Ensembl
GRCm38524,751,002 - 24,757,848 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl524,751,003 - 24,758,008 (-)EnsemblGRCm38mm10GRCm38
MGSCv37524,256,820 - 24,263,661 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36524,261,068 - 24,267,908 (-)NCBIMGSCv36mm8
Celera521,706,417 - 21,709,663 (-)NCBICelera
Cytogenetic Map5A3NCBI
cM Map511.93NCBI
Crygn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8411,286,475 - 11,294,002 (+)NCBIGRCr8
mRatBN7.2410,394,015 - 10,401,542 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl410,394,020 - 10,401,543 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx415,539,981 - 15,547,506 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0411,360,172 - 11,367,701 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.049,711,966 - 9,719,495 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.046,900,811 - 6,909,167 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl46,903,198 - 6,909,167 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.046,915,267 - 6,923,284 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.445,772,670 - 5,778,384 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.145,772,497 - 5,778,331 (+)NCBI
Celera46,010,741 - 6,016,453 (+)NCBICelera
Cytogenetic Map4q11NCBI
Crygn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554915,780,537 - 5,788,655 (-)NCBIChiLan1.0ChiLan1.0
CRYGN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11615,416,628 - 15,427,664 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1615,414,814 - 15,422,940 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1616,024,111 - 16,035,068 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01617,138,744 - 17,149,734 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1617,136,930 - 17,145,053 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11615,511,029 - 15,521,992 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01616,092,346 - 16,103,272 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01616,143,022 - 16,153,974 (-)NCBIUU_Cfam_GSD_1.0
Crygn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244051186,094,449 - 6,101,242 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365276,803,428 - 6,807,078 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365276,804,193 - 6,808,558 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CRYGN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl185,839,825 - 5,849,914 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1185,840,024 - 5,848,163 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2186,308,921 - 6,318,870 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CRYGN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121119,609,764 - 119,621,449 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21119,612,087 - 119,618,488 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607215,579,861 - 15,591,128 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Crygn
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248005,273,128 - 5,278,955 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248005,273,128 - 5,278,955 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000024247   ⟹   ENSPPAP00000005335
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl7155,166,011 - 155,177,359 (-)Ensembl
RefSeq Acc Id: XM_055115542   ⟹   XP_054971517
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v26187,848,016 - 187,862,433 (-)NCBI
NHGRI_mPanPan1739,858,282 - 39,872,699 (-)NCBI
Protein Sequences
Protein RefSeqs XP_054971517 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000005335.1
Ensembl Acc Id: ENSPPAP00000005335   ⟸   ENSPPAT00000024247
RefSeq Acc Id: XP_054971517   ⟸   XM_055115542
- UniProtKB: A0A2R8ZMZ8 (UniProtKB/TrEMBL)

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000022114 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000024247.1 UniProtKB/TrEMBL
Gene3D-CATH Crystallins UniProtKB/TrEMBL
InterPro Beta/Gamma-Crystallin UniProtKB/TrEMBL
  Beta/gamma_crystallin UniProtKB/TrEMBL
  G_crystallin-like UniProtKB/TrEMBL
NCBI Gene CRYGN ENTREZGENE
PANTHER BETA/GAMMA CRYSTALLIN UniProtKB/TrEMBL
  GAMMA-CRYSTALLIN N UniProtKB/TrEMBL
Pfam Crystall UniProtKB/TrEMBL
PRINTS BGCRYSTALLIN UniProtKB/TrEMBL
PROSITE CRYSTALLIN_BETA_GAMMA UniProtKB/TrEMBL
SMART XTALbg UniProtKB/TrEMBL
Superfamily-SCOP SSF49695 UniProtKB/TrEMBL
UniProt A0A2R8ZMZ8 ENTREZGENE, UniProtKB/TrEMBL