SAMD4B (sterile alpha motif domain containing 4B) - Rat Genome Database

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Gene: SAMD4B (sterile alpha motif domain containing 4B) Pan paniscus
Analyze
Symbol: SAMD4B
Name: sterile alpha motif domain containing 4B
RGD ID: 11814115
Description: ENCODES a protein that exhibits mRNA binding (inferred); RNA binding (inferred); translation repressor activity (inferred); INVOLVED IN cerebellar neuron development (ortholog); ASSOCIATED WITH maturity-onset diabetes of the young type 1 (ortholog); peroxisome biogenesis disorder 1A (ortholog); type 2 diabetes mellitus (ortholog); FOUND IN cytoplasm (inferred); cytosol (inferred); P-body (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22045,637,876 - 45,681,133 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11947,508,486 - 47,551,715 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01936,440,769 - 36,483,953 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11944,990,081 - 45,031,673 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1945,002,848 - 45,031,649 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
cytosol  (IEA)
P-body  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SAMD4B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22045,637,876 - 45,681,133 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11947,508,486 - 47,551,715 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01936,440,769 - 36,483,953 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11944,990,081 - 45,031,673 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1945,002,848 - 45,031,649 (+)Ensemblpanpan1.1panPan2
SAMD4B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381939,342,421 - 39,390,764 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1939,342,421 - 39,385,710 (+)EnsemblGRCh38hg38GRCh38
GRCh371939,833,061 - 39,876,340 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361944,524,948 - 44,567,382 (+)NCBINCBI36Build 36hg18NCBI36
Celera1936,634,788 - 36,677,224 (+)NCBICelera
Cytogenetic Map19q13.2NCBI
HuRef1936,279,807 - 36,322,244 (+)NCBIHuRef
CHM1_11939,833,837 - 39,876,274 (+)NCBICHM1_1
T2T-CHM13v2.01942,146,695 - 42,195,044 (+)NCBIT2T-CHM13v2.0
Samd4b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39728,098,947 - 28,135,616 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl728,098,947 - 28,135,652 (-)EnsemblGRCm39 Ensembl
GRCm38728,399,522 - 28,436,191 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl728,399,522 - 28,598,144 (-)EnsemblGRCm38mm10GRCm38
MGSCv37729,184,541 - 29,221,210 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36728,109,032 - 28,144,951 (-)NCBIMGSCv36mm8
Celera722,961,111 - 22,997,787 (-)NCBICelera
Cytogenetic Map7A3NCBI
cM Map716.73NCBI
Samd4b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8192,816,955 - 92,855,243 (-)NCBIGRCr8
mRatBN7.2183,689,413 - 83,728,652 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl183,689,413 - 83,713,853 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx189,099,410 - 89,123,871 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0197,557,924 - 97,582,336 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0190,855,280 - 90,879,743 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0185,324,017 - 85,362,266 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl185,324,043 - 85,362,241 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0186,543,900 - 86,577,571 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4183,506,971 - 83,531,789 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1183,585,834 - 83,609,901 (-)NCBI
Celera178,085,681 - 78,110,098 (-)NCBICelera
Cytogenetic Map1q21NCBI
Samd4b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955468172,352 - 199,230 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955468172,331 - 199,230 (-)NCBIChiLan1.0ChiLan1.0
SAMD4B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11113,828,432 - 113,857,336 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1113,828,447 - 113,857,314 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1113,231,809 - 113,274,282 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01114,429,074 - 114,471,549 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1114,433,532 - 114,471,571 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11113,987,790 - 114,030,223 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01113,620,568 - 113,663,020 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01114,615,665 - 114,658,139 (-)NCBIUU_Cfam_GSD_1.0
Samd4b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934913,779,811 - 13,808,124 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366612,208,827 - 2,234,010 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366612,208,852 - 2,234,660 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SAMD4B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl648,002,712 - 48,046,555 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1648,002,726 - 48,046,563 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214143,698,232 - 143,724,853 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SAMD4B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1633,949,045 - 33,990,410 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl633,963,231 - 33,988,246 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607311,969,284 - 12,010,771 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Samd4b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479412,686,543 - 12,719,695 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462479412,677,695 - 12,724,595 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000062512   ⟹   ENSPPAP00000039601
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1945,002,848 - 45,031,649 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000062524   ⟹   ENSPPAP00000039613
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1945,003,059 - 45,029,513 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000062530   ⟹   ENSPPAP00000039619
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1945,003,059 - 45,029,215 (+)Ensembl
RefSeq Acc Id: XM_034944220   ⟹   XP_034800111
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22045,637,876 - 45,681,133 (+)NCBI
NHGRI_mPanPan11947,508,486 - 47,551,715 (+)NCBI
Mhudiblu_PPA_v01936,440,784 - 36,482,426 (+)NCBI
RefSeq Acc Id: XM_034944223   ⟹   XP_034800114
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22045,637,876 - 45,681,133 (+)NCBI
NHGRI_mPanPan11947,508,486 - 47,551,715 (+)NCBI
Mhudiblu_PPA_v01936,440,769 - 36,483,953 (+)NCBI
RefSeq Acc Id: XM_034944224   ⟹   XP_034800115
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22045,637,876 - 45,681,133 (+)NCBI
NHGRI_mPanPan11947,508,486 - 47,551,715 (+)NCBI
Mhudiblu_PPA_v01936,440,839 - 36,482,426 (+)NCBI
RefSeq Acc Id: XM_034944225   ⟹   XP_034800116
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22045,637,876 - 45,681,133 (+)NCBI
NHGRI_mPanPan11947,508,486 - 47,551,715 (+)NCBI
Mhudiblu_PPA_v01936,440,776 - 36,482,426 (+)NCBI
RefSeq Acc Id: XM_055103604   ⟹   XP_054959579
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22045,637,876 - 45,681,133 (+)NCBI
NHGRI_mPanPan11947,508,486 - 47,551,715 (+)NCBI
RefSeq Acc Id: XM_055103605   ⟹   XP_054959580
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22045,637,876 - 45,681,133 (+)NCBI
NHGRI_mPanPan11947,508,486 - 47,551,715 (+)NCBI
RefSeq Acc Id: XM_057300608   ⟹   XP_057156591
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22045,637,905 - 45,681,133 (+)NCBI
NHGRI_mPanPan11947,508,513 - 47,551,715 (+)NCBI
RefSeq Acc Id: XM_057300609   ⟹   XP_057156592
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22045,637,876 - 45,681,133 (+)NCBI
NHGRI_mPanPan11947,508,486 - 47,551,715 (+)NCBI
RefSeq Acc Id: XM_063600258   ⟹   XP_063456328
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22045,637,905 - 45,681,133 (+)NCBI
RefSeq Acc Id: XM_063600259   ⟹   XP_063456329
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22045,637,904 - 45,681,133 (+)NCBI
RefSeq Acc Id: XM_063600260   ⟹   XP_063456330
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22045,637,904 - 45,681,133 (+)NCBI
RefSeq Acc Id: XP_034800114   ⟸   XM_034944223
- Peptide Label: isoform X1
- UniProtKB: A0A2R9CCE2 (UniProtKB/TrEMBL),   A0A2R9CF22 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034800116   ⟸   XM_034944225
- Peptide Label: isoform X1
- UniProtKB: A0A2R9CCE2 (UniProtKB/TrEMBL),   A0A2R9CF22 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034800111   ⟸   XM_034944220
- Peptide Label: isoform X1
- UniProtKB: A0A2R9CCE2 (UniProtKB/TrEMBL),   A0A2R9CF22 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034800115   ⟸   XM_034944224
- Peptide Label: isoform X1
- UniProtKB: A0A2R9CCE2 (UniProtKB/TrEMBL),   A0A2R9CF22 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSPPAP00000039601   ⟸   ENSPPAT00000062512
Ensembl Acc Id: ENSPPAP00000039619   ⟸   ENSPPAT00000062530
Ensembl Acc Id: ENSPPAP00000039613   ⟸   ENSPPAT00000062524
RefSeq Acc Id: XP_054959579   ⟸   XM_055103604
- Peptide Label: isoform X2
- UniProtKB: A0A2R9CF22 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054959580   ⟸   XM_055103605
- Peptide Label: isoform X2
- UniProtKB: A0A2R9CF22 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_057156592   ⟸   XM_057300609
- Peptide Label: isoform X2
- UniProtKB: A0A2R9CF22 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_057156591   ⟸   XM_057300608
- Peptide Label: isoform X1
- UniProtKB: A0A2R9CCE2 (UniProtKB/TrEMBL),   A0A2R9CF22 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063456329   ⟸   XM_063600259
- Peptide Label: isoform X2
- UniProtKB: A0A2R9CF22 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063456330   ⟸   XM_063600260
- Peptide Label: isoform X2
- UniProtKB: A0A2R9CF22 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063456328   ⟸   XM_063600258
- Peptide Label: isoform X1
- UniProtKB: A0A2R9CCE2 (UniProtKB/TrEMBL),   A0A2R9CF22 (UniProtKB/TrEMBL)
Protein Domains
SAM


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000042466 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000062512.1 UniProtKB/TrEMBL
  ENSPPAT00000062524.1 UniProtKB/TrEMBL
  ENSPPAT00000062530.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.150.50 UniProtKB/TrEMBL
  1.25.40.170 UniProtKB/TrEMBL
InterPro PHAT_dom_sf UniProtKB/TrEMBL
  SAM UniProtKB/TrEMBL
  SAM/pointed_sf UniProtKB/TrEMBL
  SMAUG/VTS1_RNA-bind UniProtKB/TrEMBL
  Smaug_SAM UniProtKB/TrEMBL
NCBI Gene SAMD4B ENTREZGENE
PANTHER PROTEIN SMAUG HOMOLOG 2 UniProtKB/TrEMBL
  STERILE ALPHA MOTIF DOMAIN CONTAINING PROTEIN 4-RELATED UniProtKB/TrEMBL
Pfam SAM_1 UniProtKB/TrEMBL
SMART SAM UniProtKB/TrEMBL
Superfamily-SCOP SSF47769 UniProtKB/TrEMBL
UniProt A0A2R9CCE2 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9CCL9_PANPA UniProtKB/TrEMBL
  A0A2R9CF22 ENTREZGENE, UniProtKB/TrEMBL