LOC100989288 (disintegrin and metalloproteinase domain-containing protein 20) - Rat Genome Database

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Gene: LOC100989288 (disintegrin and metalloproteinase domain-containing protein 20) Pan paniscus
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Symbol: LOC100989288 (Ensembl: ADAM20)
Name: disintegrin and metalloproteinase domain-containing protein 20 (Ensembl:ADAM metallopeptidase domain 20)
RGD ID: 11812954
Description: ENCODES a protein that exhibits metal ion binding (inferred); metalloendopeptidase activity (inferred); INVOLVED IN male gonad development (inferred); proteolysis (inferred); FOUND IN external side of plasma membrane (inferred); membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21571,641,738 - 71,673,912 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11470,859,202 - 70,890,425 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01451,112,799 - 51,143,333 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11469,983,079 - 70,012,681 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1469,983,295 - 69,985,625 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000016549   ⟹   ENSPPAP00000003600
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1469,983,295 - 69,985,625 (-)Ensembl
RefSeq Acc Id: XM_008977832   ⟹   XP_008976080
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21571,641,738 - 71,673,783 (-)NCBI
NHGRI_mPanPan11470,859,202 - 70,890,302 (-)NCBI
Mhudiblu_PPA_v01451,112,799 - 51,143,333 (-)NCBI
PanPan1.11469,983,295 - 70,012,681 (-)NCBI
Sequence:
RefSeq Acc Id: XM_055097741   ⟹   XP_054953716
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21571,641,738 - 71,658,931 (-)NCBI
NHGRI_mPanPan11470,859,202 - 70,875,444 (-)NCBI
RefSeq Acc Id: XM_055097742   ⟹   XP_054953717
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21571,641,738 - 71,673,912 (-)NCBI
NHGRI_mPanPan11470,859,202 - 70,890,425 (-)NCBI
Protein Sequences
Protein RefSeqs XP_008976080 (Get FASTA)   NCBI Sequence Viewer  
  XP_054953716 (Get FASTA)   NCBI Sequence Viewer  
  XP_054953717 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000003600
  ENSPPAP00000003600.1
RefSeq Acc Id: XP_008976080   ⟸   XM_008977832
- UniProtKB: A0A2R8ZIH0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSPPAP00000003600   ⟸   ENSPPAT00000016549
RefSeq Acc Id: XP_054953717   ⟸   XM_055097742
- UniProtKB: A0A2R8ZIH0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054953716   ⟸   XM_055097741
- UniProtKB: A0A2R8ZIH0 (UniProtKB/TrEMBL)
Protein Domains
Disintegrin   Peptidase M12B


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000015111 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000016549.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.390.10 UniProtKB/TrEMBL
  4.10.70.10 UniProtKB/TrEMBL
InterPro ADAM_Cys-rich UniProtKB/TrEMBL
  Disintegrin_CS UniProtKB/TrEMBL
  Disintegrin_dom UniProtKB/TrEMBL
  Disintegrin_dom_sf UniProtKB/TrEMBL
  MetalloPept_cat_dom_sf UniProtKB/TrEMBL
  Peptidase_M12B UniProtKB/TrEMBL
  Peptidase_M12B_N UniProtKB/TrEMBL
  Reprolysin_adamalysin UniProtKB/TrEMBL
KEGG Report pps:100989288 UniProtKB/TrEMBL
NCBI Gene LOC100989288 ENTREZGENE
PANTHER ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN UniProtKB/TrEMBL
  DISINTEGRIN AND METALLOPROTEINASE DOMAIN-CONTAINING PROTEIN 20 UniProtKB/TrEMBL
Pfam ADAM_CR UniProtKB/TrEMBL
  Disintegrin UniProtKB/TrEMBL
  Pep_M12B_propep UniProtKB/TrEMBL
  Reprolysin UniProtKB/TrEMBL
PRINTS DISINTEGRIN UniProtKB/TrEMBL
PROSITE ADAM_MEPRO UniProtKB/TrEMBL
  DISINTEGRIN_1 UniProtKB/TrEMBL
  DISINTEGRIN_2 UniProtKB/TrEMBL
SMART ACR UniProtKB/TrEMBL
  DISIN UniProtKB/TrEMBL
Superfamily-SCOP Metalloproteases ('zincins'), catalytic domain UniProtKB/TrEMBL
  SSF57552 UniProtKB/TrEMBL
UniProt A0A2R8ZIH0 ENTREZGENE, UniProtKB/TrEMBL