CRYBG3 (crystallin beta-gamma domain containing 3) - Rat Genome Database

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Gene: CRYBG3 (crystallin beta-gamma domain containing 3) Pan paniscus
Analyze
Symbol: CRYBG3
Name: crystallin beta-gamma domain containing 3
RGD ID: 11812430
Description: ENCODES a protein that exhibits protein kinase A binding (inferred); structural constituent of eye lens (inferred); INVOLVED IN lens development in camera-type eye (inferred); visual perception (inferred); FOUND IN protein-containing complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2295,731,832 - 95,858,282 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1395,736,621 - 95,863,089 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0394,891,281 - 95,017,694 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13101,577,148 - 101,702,418 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3101,577,148 - 101,702,418 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CRYBG3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2295,731,832 - 95,858,282 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1395,736,621 - 95,863,089 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0394,891,281 - 95,017,694 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13101,577,148 - 101,702,418 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3101,577,148 - 101,702,418 (+)Ensemblpanpan1.1panPan2
CRYBG3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38397,822,011 - 97,944,984 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl397,822,011 - 97,944,984 (+)EnsemblGRCh38hg38GRCh38
GRCh37397,540,855 - 97,663,828 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36399,078,509 - 99,146,500 (+)NCBINCBI36Build 36hg18NCBI36
Celera395,930,143 - 96,053,398 (+)NCBICelera
Cytogenetic Map3q11.2NCBI
HuRef394,910,774 - 95,033,728 (+)NCBIHuRef
CHM1_1397,503,917 - 97,626,863 (+)NCBICHM1_1
T2T-CHM13v2.03100,525,753 - 100,648,725 (+)NCBIT2T-CHM13v2.0
Crybg3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391659,312,451 - 59,421,410 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1659,311,138 - 59,421,342 (-)EnsemblGRCm39 Ensembl
GRCm381659,492,088 - 59,601,047 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1659,490,775 - 59,600,979 (-)EnsemblGRCm38mm10GRCm38
MGSCv371659,490,601 - 59,555,578 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361659,434,352 - 59,498,008 (-)NCBIMGSCv36mm8
Celera1659,842,911 - 59,907,993 (-)NCBICelera
Cytogenetic Map16C1.3NCBI
cM Map1634.83NCBI
Crybg3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81154,218,399 - 54,330,962 (+)NCBIGRCr8
mRatBN7.21140,749,198 - 40,861,753 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1140,749,214 - 40,861,752 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01142,895,610 - 43,006,568 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1142,945,084 - 43,005,097 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01146,086,217 - 46,195,875 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41141,563,759 - 41,625,885 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11141,568,746 - 41,682,825 (+)NCBI
Celera1140,591,247 - 40,703,634 (+)NCBICelera
Cytogenetic Map11q12NCBI
Crybg3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955407205,010 - 298,664 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955407203,315 - 329,017 (-)NCBIChiLan1.0ChiLan1.0
CRYBG3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1334,864,458 - 4,967,707 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl334,864,458 - 4,966,440 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha335,046,281 - 5,148,274 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0334,975,125 - 5,077,246 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl334,974,992 - 5,077,248 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1334,851,593 - 4,953,682 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0334,911,930 - 5,014,053 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0335,186,317 - 5,288,372 (+)NCBIUU_Cfam_GSD_1.0
Crybg3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602152,276,840 - 152,388,522 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366663,127,135 - 3,239,324 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366663,127,109 - 3,237,636 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CRYBG3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13162,355,472 - 162,478,720 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113162,354,343 - 162,478,771 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213172,665,064 - 172,743,604 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CRYBG3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12282,756,653 - 82,885,465 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2282,758,339 - 82,885,431 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604183,700,498 - 83,825,139 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Crybg3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478910,273,429 - 10,391,131 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478910,273,386 - 10,392,694 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000057451   ⟹   ENSPPAP00000034568
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl3101,577,148 - 101,702,418 (+)Ensembl
RefSeq Acc Id: XM_003821882   ⟹   XP_003821930
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2295,731,832 - 95,858,282 (+)NCBI
NHGRI_mPanPan1395,736,621 - 95,863,089 (+)NCBI
Mhudiblu_PPA_v0394,891,281 - 95,017,694 (+)NCBI
PanPan1.13101,577,148 - 101,702,418 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003821930 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000034568.1
RefSeq Acc Id: XP_003821930   ⟸   XM_003821882
- UniProtKB: A0A2R9BY08 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSPPAP00000034568   ⟸   ENSPPAT00000057451

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000040131 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000057451.1 UniProtKB/TrEMBL
Gene3D-CATH 2.80.10.50 UniProtKB/TrEMBL
  Crystallins UniProtKB/TrEMBL
InterPro Beta/Gamma-Crystallin UniProtKB/TrEMBL
  Beta/gamma_crystallin UniProtKB/TrEMBL
  G_crystallin-like UniProtKB/TrEMBL
  Ricin_B-like_lectins UniProtKB/TrEMBL
  Ricin_B_lectin UniProtKB/TrEMBL
KEGG Report pps:100968726 UniProtKB/TrEMBL
NCBI Gene CRYBG3 ENTREZGENE
PANTHER BETA/GAMMA CRYSTALLIN UniProtKB/TrEMBL
  VERY LARGE A-KINASE ANCHOR PROTEIN UniProtKB/TrEMBL
Pfam Crystall UniProtKB/TrEMBL
  Ricin_B_lectin UniProtKB/TrEMBL
PRINTS BGCRYSTALLIN UniProtKB/TrEMBL
PROSITE CRYSTALLIN_BETA_GAMMA UniProtKB/TrEMBL
  RICIN_B_LECTIN UniProtKB/TrEMBL
SMART RICIN UniProtKB/TrEMBL
  XTALbg UniProtKB/TrEMBL
Superfamily-SCOP SSF49695 UniProtKB/TrEMBL
  SSF50370 UniProtKB/TrEMBL
UniProt A0A2R9BY08 ENTREZGENE, UniProtKB/TrEMBL