NDUFAF5 (NADH:ubiquinone oxidoreductase complex assembly factor 5) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: NDUFAF5 (NADH:ubiquinone oxidoreductase complex assembly factor 5) Pan paniscus
Analyze
Symbol: NDUFAF5
Name: NADH:ubiquinone oxidoreductase complex assembly factor 5
RGD ID: 11806300
Description: ENCODES a protein that exhibits methyltransferase activity (inferred); S-adenosylmethionine-dependent methyltransferase activity (inferred); INVOLVED IN methylation (inferred); mitochondrial respiratory chain complex I assembly (inferred); ASSOCIATED WITH genetic disease (ortholog); Leber plus disease (ortholog); Leigh disease (ortholog); FOUND IN matrix side of mitochondrial inner membrane (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: arginine-hydroxylase NDUFAF5, mitochondrial; NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22114,679,233 - 14,715,055 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12014,675,994 - 14,724,032 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02013,751,315 - 13,788,024 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12013,735,768 - 13,769,147 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2013,735,798 - 13,768,671 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
NDUFAF5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22114,679,233 - 14,715,055 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12014,675,994 - 14,724,032 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02013,751,315 - 13,788,024 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12013,735,768 - 13,769,147 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2013,735,798 - 13,768,671 (+)Ensemblpanpan1.1panPan2
NDUFAF5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382013,785,028 - 13,821,580 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2013,785,007 - 13,821,580 (+)EnsemblGRCh38hg38GRCh38
GRCh372013,765,674 - 13,802,226 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362013,713,682 - 13,745,874 (+)NCBINCBI36Build 36hg18NCBI36
Celera2013,835,718 - 13,869,123 (+)NCBICelera
Cytogenetic Map20p12.1NCBI
HuRef2013,720,309 - 13,753,711 (+)NCBIHuRef
CHM1_12013,765,617 - 13,799,023 (+)NCBICHM1_1
T2T-CHM13v2.02013,828,747 - 13,865,323 (+)NCBIT2T-CHM13v2.0
Ndufaf5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392140,012,504 - 140,047,172 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2140,012,569 - 140,045,609 (+)EnsemblGRCm39 Ensembl
GRCm382140,170,584 - 140,218,965 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2140,170,649 - 140,203,689 (+)EnsemblGRCm38mm10GRCm38
MGSCv372139,996,382 - 140,030,988 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362139,862,471 - 139,895,073 (+)NCBIMGSCv36mm8
Celera2141,356,217 - 141,391,065 (+)NCBICelera
Cytogenetic Map2F3NCBI
cM Map269.2NCBI
Ndufaf5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83147,961,612 - 147,991,128 (+)NCBIGRCr8
mRatBN7.23127,507,931 - 127,537,477 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3127,507,941 - 127,537,477 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3131,371,136 - 131,400,649 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03139,955,232 - 139,984,745 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03137,658,373 - 137,687,888 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03133,232,412 - 133,261,932 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3133,232,432 - 133,261,973 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03139,688,300 - 139,717,717 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43128,353,866 - 128,384,213 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13128,259,473 - 128,289,786 (+)NCBI
Celera3126,154,809 - 126,184,287 (+)NCBICelera
Cytogenetic Map3q41NCBI
Ndufaf5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541523,221,084 - 23,262,073 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541523,221,084 - 23,263,548 (+)NCBIChiLan1.0ChiLan1.0
NDUFAF5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1248,810,682 - 8,873,212 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl248,837,253 - 8,873,176 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha248,621,611 - 8,684,816 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0249,249,725 - 9,285,751 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl249,247,744 - 9,285,708 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1248,822,205 - 8,885,310 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0248,918,663 - 8,981,572 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0249,267,158 - 9,330,256 (-)NCBIUU_Cfam_GSD_1.0
Ndufaf5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640157,563,024 - 157,593,648 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364855,992,668 - 6,025,467 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364855,994,388 - 6,025,042 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NDUFAF5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1722,480,340 - 22,511,180 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11722,480,344 - 22,508,804 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21725,160,198 - 25,188,788 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NDUFAF5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1242,670,613 - 42,706,341 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl242,670,421 - 42,711,024 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660542,946,890 - 2,982,616 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ndufaf5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474114,778,109 - 14,823,893 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474114,778,126 - 14,824,079 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000066040   ⟹   ENSPPAP00000043105
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2013,735,798 - 13,768,671 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000066041   ⟹   ENSPPAP00000043106
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2013,735,918 - 13,767,782 (+)Ensembl
RefSeq Acc Id: XM_003810580   ⟹   XP_003810628
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22114,679,233 - 14,715,055 (+)NCBI
NHGRI_mPanPan12014,676,000 - 14,724,032 (+)NCBI
Mhudiblu_PPA_v02013,751,321 - 13,784,859 (+)NCBI
PanPan1.12013,735,784 - 13,769,144 (+)NCBI
Sequence:
RefSeq Acc Id: XM_024926877   ⟹   XP_024782645
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22114,679,233 - 14,703,018 (+)NCBI
NHGRI_mPanPan12014,675,994 - 14,699,849 (+)NCBI
Mhudiblu_PPA_v02013,751,315 - 13,769,882 (+)NCBI
PanPan1.12013,735,768 - 13,754,251 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034947131   ⟹   XP_034803022
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22114,679,233 - 14,703,018 (+)NCBI
NHGRI_mPanPan12014,675,995 - 14,699,849 (+)NCBI
Mhudiblu_PPA_v02013,751,315 - 13,775,173 (+)NCBI
RefSeq Acc Id: XM_034947132   ⟹   XP_034803023
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22114,681,492 - 14,715,055 (+)NCBI
NHGRI_mPanPan12014,678,323 - 14,724,032 (+)NCBI
Mhudiblu_PPA_v02013,753,633 - 13,784,859 (+)NCBI
RefSeq Acc Id: XM_034947133   ⟹   XP_034803024
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22114,681,470 - 14,715,055 (+)NCBI
NHGRI_mPanPan12014,678,301 - 14,724,032 (+)NCBI
Mhudiblu_PPA_v02013,753,624 - 13,784,859 (+)NCBI
RefSeq Acc Id: XM_034947134   ⟹   XP_034803025
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22114,681,470 - 14,715,055 (+)NCBI
NHGRI_mPanPan12014,678,301 - 14,724,032 (+)NCBI
Mhudiblu_PPA_v02013,753,624 - 13,784,859 (+)NCBI
RefSeq Acc Id: XM_055105073   ⟹   XP_054961048
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22114,679,233 - 14,711,059 (+)NCBI
NHGRI_mPanPan12014,675,997 - 14,707,890 (+)NCBI
RefSeq Acc Id: XP_003810628   ⟸   XM_003810580
- Peptide Label: isoform X1
- UniProtKB: A0A2R9CM80 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_024782645   ⟸   XM_024926877
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_034803022   ⟸   XM_034947131
- Peptide Label: isoform X3
RefSeq Acc Id: XP_034803025   ⟸   XM_034947134
- Peptide Label: isoform X5
RefSeq Acc Id: XP_034803024   ⟸   XM_034947133
- Peptide Label: isoform X4
RefSeq Acc Id: XP_034803023   ⟸   XM_034947132
- Peptide Label: isoform X4
Ensembl Acc Id: ENSPPAP00000043105   ⟸   ENSPPAT00000066040
Ensembl Acc Id: ENSPPAP00000043106   ⟸   ENSPPAT00000066041
RefSeq Acc Id: XP_054961048   ⟸   XM_055105073
- Peptide Label: isoform X2
Protein Domains
Methyltransferase type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000044089 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000066040.1 UniProtKB/TrEMBL
  ENSPPAT00000066041.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.150 UniProtKB/TrEMBL
InterPro Malonyl-ACP_OMT UniProtKB/TrEMBL
  Methyltransf_11 UniProtKB/TrEMBL
  SAM-dependent_MTases UniProtKB/TrEMBL
KEGG Report pps:100988527 UniProtKB/TrEMBL
NCBI Gene NDUFAF5 ENTREZGENE
PANTHER ARGININE-HYDROXYLASE NDUFAF5, MITOCHONDRIAL UniProtKB/TrEMBL
  UNCHARACTERIZED UniProtKB/TrEMBL
Pfam Methyltransf_11 UniProtKB/TrEMBL
  Methyltransf_23 UniProtKB/TrEMBL
Superfamily-SCOP SSF53335 UniProtKB/TrEMBL
UniProt A0A2R9CM80 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9CMB4_PANPA UniProtKB/TrEMBL