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Gene: CD1D (CD1d molecule) Pan paniscus

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Symbol:

CD1D

Name:

CD1d molecule

RGD ID:

11803892

Description:

ENCODES a protein that exhibits T cell receptor binding (ortholog); INVOLVED IN antigen processing and presentation (ortholog); antigen processing and presentation, exogenous lipid antigen via MHC class Ib (ortholog); NK T cell differentiation (ortholog); ASSOCIATED WITH Acute Hepatitis (ortholog); Arenaviridae infectious disease (ortholog); asthma (ortholog); FOUND IN early endosome (ortholog); late endosome (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

antigen-presenting glycoprotein CD1d; LOC117975889; uncharacterized LOC117975889

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	91,650,464 - 91,694,649 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	91,394,387 - 91,438,560 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	133,549,258 - 133,557,752 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	137,339,774 - 137,348,173 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	137,341,690 - 137,348,173 (+)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Acute Hepatitis (ISO)

Arenaviridae infectious disease (ISO)

asthma (ISO)

Candidemia (ISO)

Chlamydiaceae Infections (ISO)

Chronic Hepatitis B (ISO)

Coxsackievirus Infections (ISO)

Cytomegalovirus Infections (ISO)

dengue hemorrhagic fever (ISO)

gastrointestinal stromal tumor (ISO)

Helicobacter Infections (ISO)

hepatitis (ISO)

herpes simplex (ISO)

Herpesviridae Infections (ISO)

lupus erythematosus (ISO)

malaria (ISO)

Metapneumovirus infections (ISO)

myocarditis (ISO)

parathyroid carcinoma (ISO)

periodontal disease (ISO)

peripheral T-cell lymphoma (ISO)

Picornaviridae Infections (ISO)

pulmonary tuberculosis (ISO)

respiratory syncytial virus infectious disease (ISO)

Schistosomiasis Japonica (ISO)

Sepsis (ISO)

stomach cancer (ISO)

trypanosomiasis (ISO)

urinary schistosomiasis (ISO)

Viral Eye Infections (ISO)

Viral Myocarditis (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

antigen processing and presentation (ISO)

antigen processing and presentation, endogenous lipid antigen via MHC class Ib (IEA)

antigen processing and presentation, exogenous lipid antigen via MHC class Ib (IEA,ISO)

immune response (IEA)

immune system process (IEA)

innate immune response (IEA)

NK T cell differentiation (ISO)

positive regulation of interleukin-2 production (ISO)

positive regulation of interleukin-4 production (ISO)

positive regulation of macrophage activation (ISO)

positive regulation of NK T cell activation (ISO)

positive regulation of NK T cell differentiation (ISO)

positive regulation of T cell mediated cytotoxicity (IEA,ISO)

positive regulation of T cell proliferation (IEA)

positive regulation of type II interferon production (ISO)

positive thymic T cell selection (ISO)

regulation of immature T cell proliferation in thymus (ISO)

regulation of immune response (ISO)

Cellular Component

cell surface (IEA)

cytoplasm (IEA)

early endosome (ISO)

endoplasmic reticulum (IEA)

endosome (IEA)

endosome membrane (IEA)

external side of plasma membrane (IEA)

extracellular space (IEA)

late endosome (ISO)

lysosomal membrane (IEA)

lysosome (IEA)

membrane (IEA)

plasma membrane (IEA)

Molecular Function

cell adhesion molecule binding (IEA)

endogenous lipid antigen binding (IEA)

exogenous lipid antigen binding (IEA)

lipid antigen binding (IEA)

lipopeptide binding (IEA)

protein binding (ISO)

T cell receptor binding (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

CD1D
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	91,650,464 - 91,694,649 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	91,394,387 - 91,438,560 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	133,549,258 - 133,557,752 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	137,339,774 - 137,348,173 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	137,341,690 - 137,348,173 (+)	Ensembl	panpan1.1		panPan2

CD1D
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	158,178,030 - 158,186,427 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	158,178,030 - 158,186,427 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	158,147,820 - 158,156,217 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	156,416,361 - 156,422,841 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	154,962,809 - 154,967,758	NCBI
Celera	1	131,220,809 - 131,227,289 (+)	NCBI		Celera
Cytogenetic Map	1	q23.1	NCBI
HuRef	1	129,508,011 - 129,514,491 (+)	NCBI		HuRef
CHM1_1	1	159,546,145 - 159,552,625 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	157,297,517 - 157,323,522 (+)	NCBI		T2T-CHM13v2.0

Cd1d1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	86,903,141 - 86,919,665 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	86,903,141 - 86,906,748 (-)	Ensembl		GRCm39 Ensembl
GRCm38	3	86,995,834 - 87,012,358 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	86,995,834 - 86,999,441 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	86,799,756 - 86,803,262 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	87,081,765 - 87,085,267 (-)	NCBI		MGSCv36	mm8
Celera	3	87,021,305 - 87,024,811 (-)	NCBI		Celera
Cytogenetic Map	3	F1	NCBI
cM Map	3	37.91	NCBI

Cd1d1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	174,721,522 - 174,725,029 (-)	NCBI		GRCr8
mRatBN7.2	2	172,423,582 - 172,427,089 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	172,423,582 - 172,427,089 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	179,568,188 - 179,571,726 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	177,590,509 - 177,594,047 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	172,190,847 - 172,194,381 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	186,330,298 - 186,333,805 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	186,330,298 - 186,333,805 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	205,728,725 - 205,732,232 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	179,011,165 - 179,014,672 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	178,961,270 - 178,964,778 (-)	NCBI
Celera	2	166,382,474 - 166,385,981 (-)	NCBI		Celera
Cytogenetic Map	2	q34	NCBI

CD1D
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	38	23,489,169 - 23,491,712 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	38	23,516,058 - 23,520,487 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	38	23,658,417 - 23,662,742 (-)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	38	23,402,320 - 23,406,627 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	38	23,956,328 - 23,960,599 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	38	24,357,336 - 24,361,653 (-)	NCBI		UU_Cfam_GSD_1.0

PCD1B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	92,031,712 - 92,040,742 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	92,035,122 - 92,040,724 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	100,378,316 - 100,383,517 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CD1D
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	5,726,307 - 5,733,355 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	5,727,049 - 5,730,061 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	4,918,748 - 4,925,895 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_008974483	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008974484	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034938100	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055112881	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055112884	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055112886	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055112893	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055112896	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055112898	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055112901	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055112905	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055112910	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055112912	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055112915	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSPPAT00000040231 ⟹ ENSPPAP00000017523

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	1	137,341,690 - 137,348,173 (+)	Ensembl

RefSeq Acc Id:

XM_008974483 ⟹ XP_008972731

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	1	91,650,464 - 91,657,614 (-)	NCBI
NHGRI_mPanPan1	1	91,394,387 - 91,401,545 (-)	NCBI
Mhudiblu_PPA_v0	1	133,549,258 - 133,556,217 (+)	NCBI
PanPan1.1	1	137,339,774 - 137,346,641 (+)	NCBI

Sequence:

show sequence

CCCAAAGTCGCTGGAGTTTTGCTCCTGGGACTGGACGTCCGAGAGGAAAGTGAGACACGCCGGT
TGTGAAACCTACTGAAGTGAGCGGCGGCGCCAGGATTCCTGGGACCCCGACCTCTTTGCAGCTC
GCACAGCTAAGGGCGAGGGCGCCCTTCGGCAGAAGCAGCAAACCGCCGGCAAGCCCAGCGAGGA
GGGCTGCCGGGGTCTGGGCTTGGGAATTGGCTGGCACCCAGCGGAAAGGGACGTGAGCTGAGCG
GCAGGGGAGAAGAGTGCGCAGGTCAGAGGGCGGCGCGCAGCGGCGCTCCGCGAGGTCCCCACGC
CGGGCGATATGGGGTGCCTGCTGTTTCTGCTGCTCTGGGCGCTCCTCCAGGCTTGGGGAAGCGC
TGAAGTCCCGCAAAGGCTTTTCCCCCTCCGCTGCCTCCAGATCTCGTCCTTCGCCAATAGCAGC
TGGACGCGCACCGACGGCTTGGCGTGGCTGGGGGAGCTGCAGACGCATAGCTGGAGCAACGACT
CGGACACCGTCCGCTCTCTGAAGCCTTGGTCCCAGGGCACGTTCAGCGACCAGCAGTGGGAGAC
GCTGCAGCATATATTTCGGGTTTATCGAAGCAGCTTCACCAGGGACGTGAAGGAATTCGCCAAA
ATGCTACGCTTATCCTATCCCTTGGAGCTCCAGGTGTCCGCTGGCTGTGAGGTGCACCCTGGGA
ACGCCTCAAATAACTTCTTCCATGTAGCATTTCAAGGAAAAGATATCCTGAGTTTCCAAGGAAC
TTCTTGGGAGCCAACCCAAGAGGCCCCACTTTGGGTAAACTTGGCCATTCAAGTGCTCAACCAG
GACAAGTGGACGAGGGAAACAGTGCAGTGGCTCCTTAATGGCACCTGCCCCCAATTTGTCAGTG
GCCTCCTTGAGTCAGGGAAGTCGGAACTGGAGAAGCAAGTGAAGCCCAAGGCCTGGCTGTCCCG
TGGCCCCAGTCCTGGCCCTGGCCGTCTGCTGCTGGTGTGCCATGTCTCAGGATTCTACCCAAAG
CCTGTATGGGTGAAGTGGATGCGGGGTGAGCAGGAGCAGCAGGACACTCAGCCAGGGGACATCC
TGCCCAATGCTGACGAGACATGGTATCTCCGAGCAACCCTGGATGTGGCGGCTGGGGAGGCGGC
TGGCCTGTCCTGTCGGGTGAAGCACAGCAGTCTAGAGGGCCAGGACATCATCCTCTACTGGGCA
GGTGGGAGCTACACCTCCGTGGGCTTGATTGTCTTGGCAGTCTTGGCATGCTTGCTGTTCCTCC
TCATTGTGGGCTTTACCTCCCGGTTTAAGAGGCAAACTTCCTATCAGGGCGTCCTGTGACTCGC
CTTGCCACATCTGTGTCTCTGGAACCCAGGACCTCTGGACCTCAGGTTCCCAAGACTTCAGTCC
TGGTCTGCTCAGGAATTGAAGATGAAAGAAATTGAAGATGAAAGGAGAGATACCTTGAAAAAGT
AGAGAACAGTCATGAGGCAGCTTTCATCACACCCTTTTAACATTTATCTAAAAGAATTTAAATT
CTTTTTCAAAAATTACACTACAAGTTTATAAGCCCAAATGGCTCTGTGAAATCAGAAGTGCAGA
GGTGTGCAAACTTGTATCTGAAGACCTACCAGAGACAAGCAGGTAAGAGCTGATGTGAGTGTGT
GTGATGGGATCTGCAAGGAACTGGAACACACATGTCCTATCCAAAGGAATCAGTTGCAGCTGCT
TGTTGTCAAGTATAAAGTCAGGACCTGGCTTGGCTTTAACCGTTTTTCAAGAAAACTGGAAATC
TGGATTTTCAGCGAACATGCCTGATTTTAAAAGGTTGACTCAAGTTTTTACAAAATACTATGTG
GGACACCTCAAATACATACCTACTGACTGATGACAAACCCAGGAGTTTGTGTCTCTTTTATAAA
AAGTTTGCCCTGGATGTCATATTGGTAGTTGGAGGACACAGTTTCTATTGTAAATTTGGATTTA
CGACTGAAGAAGGACATTTTCTCTTTAAAAGAAAGTTAGGTTATAAGAAACAGAGGGGTCTCAC
ATTTTTACTTAGTGTAATTAATAAATGAAGAGAAATCATA

hide sequence

RefSeq Acc Id:

XM_008974484 ⟹ XP_008972732

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	1	91,650,464 - 91,657,614 (-)	NCBI
NHGRI_mPanPan1	1	91,394,387 - 91,401,545 (-)	NCBI
Mhudiblu_PPA_v0	1	133,549,261 - 133,557,752 (+)	NCBI
PanPan1.1	1	137,339,774 - 137,346,641 (+)	NCBI

Sequence:

show sequence

CCCAAAGTCGCTGGAGTTTTGCTCCTGGGACTGGACGTCCGAGAGGAAAGTGAGACACGCCGGT
TGTGAAACCTACTGAAGTGAGCGGCGGCGCCAGGATTCCTGGGACCCCGACCTCTTTGCAGCTC
GCACAGCTAAGGGCGAGGGCGCCCTTCGGCAGAAGCAGCAAACCGCCGGCAAGCCCAGCGAGGA
GGGCTGCCGGGGTCTGGGCTTGGGAATTGGCTGGCACCCAGCGGAAAGGGACGTGAGCTGAGCG
GCAGGGGAGAAGAGTGCGCAGGTCAGAGGGCGGCGCGCAGCGGCGCTCCGCGAGGTCCCCACGC
CGGGCGATATGGGGTGCCTGCTGTTTCTGCTGCTCTGGGCGCTCCTCCAGGCTTGGGGAAGCGC
TGAAGTCCCGCAAAGGCTTTTCCCCCTCCGCTGCCTCCAGATCTCGTCCTTCGCCAATAGCAGC
TGGACGCGCACCGACGGCTTGGCGTGGCTGGGGGAGCTGCAGACGCATAGCTGGAGCAACGACT
CGGACACCGTCCGCTCTCTGAAGCCTTGGTCCCAGGGCACGTTCAGCGACCAGCAGTGGGAGAC
GCTGCAGCATATATTTCGGGTTTATCGAAGCAGCTTCACCAGGGACGTGAAGGAATTCGCCAAA
ATGCTACGCTTATCCTATCCCTTGGAGCTCCAGGTGTCCGCTGGCTGTGAGGTGCACCCTGGGA
ACGCCTCAAATAACTTCTTCCATGTAGCATTTCAAGGAAAAGATATCCTGAGTTTCCAAGGAAC
TTCTTGGGAGCCAACCCAAGAGGCCCCACTTTGGGTAAACTTGGCCATTCAAGTGCTCAACCAG
GACAAGTGGACGAGGGAAACAGTGCAGTGGCTCCTTAATGGCACCTGCCCCCAATTTGTCAGTG
GCCTCCTTGAGTCAGGGAAGTCGGAACTGGAGAAGCAAGTGAAGCCCAAGGCCTGGCTGTCCCG
TGGCCCCAGTCCTGGCCCTGGCCGTCTGCTGCTGGTGTGCCATGTCTCAGGATTCTACCCAAAG
CCTGTATGGGTGAAGTGGATGCGGGGTGAGCAGGAGCAGCAGGACACTCAGCCAGGGGACATCC
TGCCCAATGCTGACGAGACATGGTATCTCCGAGCAACCCTGGATGTGGCGGCTGGGGAGGCGGC
TGGCCTGTCCTGTCGGGTGAAGCACAGCAGTCTAGAGGGCCAGGACATCATCCTCTACTGGGGT
GGGAGCTACACCTCCGTGGGCTTGATTGTCTTGGCAGTCTTGGCATGCTTGCTGTTCCTCCTCA
TTGTGGGCTTTACCTCCCGGTTTAAGAGGCAAACTTCCTATCAGGGCGTCCTGTGACTCGCCTT
GCCACATCTGTGTCTCTGGAACCCAGGACCTCTGGACCTCAGGTTCCCAAGACTTCAGTCCTGG
TCTGCTCAGGAATTGAAGATGAAAGAAATTGAAGATGAAAGGAGAGATACCTTGAAAAAGTAGA
GAACAGTCATGAGGCAGCTTTCATCACACCCTTTTAACATTTATCTAAAAGAATTTAAATTCTT
TTTCAAAAATTACACTACAAGTTTATAAGCCCAAATGGCTCTGTGAAATCAGAAGTGCAGAGGT
GTGCAAACTTGTATCTGAAGACCTACCAGAGACAAGCAGGTAAGAGCTGATGTGAGTGTGTGTG
ATGGGATCTGCAAGGAACTGGAACACACATGTCCTATCCAAAGGAATCAGTTGCAGCTGCTTGT
TGTCAAGTATAAAGTCAGGACCTGGCTTGGCTTTAACCGTTTTTCAAGAAAACTGGAAATCTGG
ATTTTCAGCGAACATGCCTGATTTTAAAAGGTTGACTCAAGTTTTTACAAAATACTATGTGGGA
CACCTCAAATACATACCTACTGACTGATGACAAACCCAGGAGTTTGTGTCTCTTTTATAAAAAG
TTTGCCCTGGATGTCATATTGGTAGTTGGAGGACACAGTTTCTATTGTAAATTTGGATTTACGA
CTGAAGAAGGACATTTTCTCTTTAAAAGAAAGTTAGGTTATAAGAAACAGAGGGGTCTCACATT
TTTACTTAGTGTAATTAATAAATGAAGAGAAATCATA

hide sequence

RefSeq Acc Id:

XM_055112881 ⟹ XP_054968856

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	1	91,650,464 - 91,694,648 (-)	NCBI
NHGRI_mPanPan1	1	91,394,387 - 91,438,559 (-)	NCBI

RefSeq Acc Id:

XM_055112884 ⟹ XP_054968859

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	1	91,650,464 - 91,694,649 (-)	NCBI
NHGRI_mPanPan1	1	91,394,387 - 91,438,560 (-)	NCBI

RefSeq Acc Id:

XM_055112886 ⟹ XP_054968861

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	1	91,650,464 - 91,694,635 (-)	NCBI
NHGRI_mPanPan1	1	91,394,387 - 91,438,546 (-)	NCBI

RefSeq Acc Id:

XM_055112893 ⟹ XP_054968868

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	1	91,650,464 - 91,694,648 (-)	NCBI
NHGRI_mPanPan1	1	91,394,387 - 91,438,559 (-)	NCBI

RefSeq Acc Id:

XM_055112896 ⟹ XP_054968871

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	1	91,650,464 - 91,694,648 (-)	NCBI
NHGRI_mPanPan1	1	91,394,387 - 91,438,559 (-)	NCBI

RefSeq Acc Id:

XM_055112898 ⟹ XP_054968873

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	1	91,650,464 - 91,694,648 (-)	NCBI
NHGRI_mPanPan1	1	91,394,387 - 91,438,559 (-)	NCBI

RefSeq Acc Id:

XM_055112901 ⟹ XP_054968876

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	1	91,650,464 - 91,694,648 (-)	NCBI
NHGRI_mPanPan1	1	91,394,387 - 91,438,559 (-)	NCBI

RefSeq Acc Id:

XM_055112905 ⟹ XP_054968880

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	1	91,650,464 - 91,694,637 (-)	NCBI
NHGRI_mPanPan1	1	91,394,387 - 91,438,548 (-)	NCBI

RefSeq Acc Id:

XM_055112910 ⟹ XP_054968885

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	1	91,650,464 - 91,694,639 (-)	NCBI
NHGRI_mPanPan1	1	91,394,387 - 91,438,550 (-)	NCBI

RefSeq Acc Id:

XM_055112912 ⟹ XP_054968887

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	1	91,650,464 - 91,694,605 (-)	NCBI
NHGRI_mPanPan1	1	91,394,387 - 91,438,516 (-)	NCBI

RefSeq Acc Id:

XM_055112915 ⟹ XP_054968890

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	1	91,650,464 - 91,694,605 (-)	NCBI
NHGRI_mPanPan1	1	91,394,387 - 91,438,516 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_008972731	(Get FASTA)	NCBI Sequence Viewer
	XP_008972732	(Get FASTA)	NCBI Sequence Viewer
	XP_054968856	(Get FASTA)	NCBI Sequence Viewer
	XP_054968859	(Get FASTA)	NCBI Sequence Viewer
	XP_054968861	(Get FASTA)	NCBI Sequence Viewer
	XP_054968868	(Get FASTA)	NCBI Sequence Viewer
	XP_054968871	(Get FASTA)	NCBI Sequence Viewer
	XP_054968873	(Get FASTA)	NCBI Sequence Viewer
	XP_054968876	(Get FASTA)	NCBI Sequence Viewer
	XP_054968880	(Get FASTA)	NCBI Sequence Viewer
	XP_054968885	(Get FASTA)	NCBI Sequence Viewer
	XP_054968887	(Get FASTA)	NCBI Sequence Viewer
	XP_054968890	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000017523.1

RefSeq Acc Id:

XP_008972731 ⟸ XM_008974483

- Peptide Label:

isoform X1

- Sequence:

show sequence

MGCLLFLLLWALLQAWGSAEVPQRLFPLRCLQISSFANSSWTRTDGLAWLGELQTHSWSNDSDT
VRSLKPWSQGTFSDQQWETLQHIFRVYRSSFTRDVKEFAKMLRLSYPLELQVSAGCEVHPGNAS
NNFFHVAFQGKDILSFQGTSWEPTQEAPLWVNLAIQVLNQDKWTRETVQWLLNGTCPQFVSGLL
ESGKSELEKQVKPKAWLSRGPSPGPGRLLLVCHVSGFYPKPVWVKWMRGEQEQQDTQPGDILPN
ADETWYLRATLDVAAGEAAGLSCRVKHSSLEGQDIILYWAGGSYTSVGLIVLAVLACLLFLLIV
GFTSRFKRQTSYQGVL

hide sequence

RefSeq Acc Id:	XP_008972732 ⟸ XM_008974484
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9AKA8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGCLLFLLLWALLQAWGSAEVPQRLFPLRCLQISSFANSSWTRTDGLAWLGELQTHSWSNDSDT VRSLKPWSQGTFSDQQWETLQHIFRVYRSSFTRDVKEFAKMLRLSYPLELQVSAGCEVHPGNAS NNFFHVAFQGKDILSFQGTSWEPTQEAPLWVNLAIQVLNQDKWTRETVQWLLNGTCPQFVSGLL ESGKSELEKQVKPKAWLSRGPSPGPGRLLLVCHVSGFYPKPVWVKWMRGEQEQQDTQPGDILPN ADETWYLRATLDVAAGEAAGLSCRVKHSSLEGQDIILYWGGSYTSVGLIVLAVLACLLFLLIVG FTSRFKRQTSYQGVL hide sequence

Ensembl Acc Id:

ENSPPAP00000017523 ⟸ ENSPPAT00000040231

RefSeq Acc Id:	XP_054968859 ⟸ XM_055112884
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_054968856 ⟸ XM_055112881
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_054968868 ⟸ XM_055112893
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9AKA8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_054968871 ⟸ XM_055112896
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9AKA8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_054968876 ⟸ XM_055112901
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9AKA8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_054968873 ⟸ XM_055112898
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9AKA8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_054968885 ⟸ XM_055112910
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9AKA8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_054968880 ⟸ XM_055112905
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9AKA8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_054968861 ⟸ XM_055112886
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_054968890 ⟸ XM_055112915
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9AKA8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_054968887 ⟸ XM_055112912
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9AKA8 (UniProtKB/TrEMBL)

Protein Domains

Ig-like

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000031860	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000040231.1	UniProtKB/TrEMBL
Gene3D-CATH	2.60.40.10	UniProtKB/TrEMBL
	3.30.500.10	UniProtKB/TrEMBL
InterPro	Ig-like_dom	UniProtKB/TrEMBL
	Ig-like_dom_sf	UniProtKB/TrEMBL
	Ig-like_fold	UniProtKB/TrEMBL
	Ig_C1-set	UniProtKB/TrEMBL
	MHC_class-I_related	UniProtKB/TrEMBL
	MHC_I-like_Ag-recog	UniProtKB/TrEMBL
	MHC_I-like_Ag-recog_sf	UniProtKB/TrEMBL
	MHC_I/II-like_Ag-recog	UniProtKB/TrEMBL
NCBI Gene	CD1D	ENTREZGENE
PANTHER	ANTIGEN-PRESENTING GLYCOPROTEIN CD1D	UniProtKB/TrEMBL
	MHC CLASS I-RELATED	UniProtKB/TrEMBL
Pfam	C1-set	UniProtKB/TrEMBL
	MHC_I_3	UniProtKB/TrEMBL
PROSITE	IG_LIKE	UniProtKB/TrEMBL
SMART	IGc1	UniProtKB/TrEMBL
Superfamily-SCOP	SSF48726	UniProtKB/TrEMBL
	SSF54452	UniProtKB/TrEMBL
UniProt	A0A2R9AKA8	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2023-04-20	CD1D	CD1d molecule	LOC117975889	uncharacterized LOC117975889	Data merged from RGD:32731560	737654	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar