LOC100982859 (class I histocompatibility antigen, Gogo-B*0101 alpha chain) - Rat Genome Database

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Gene: LOC100982859 (class I histocompatibility antigen, Gogo-B*0101 alpha chain) Pan paniscus
Analyze
Symbol: LOC100982859 (Ensembl: HLA-B)
Name: class I histocompatibility antigen, Gogo-B*0101 alpha chain (Ensembl:major histocompatibility complex, class I, B)
RGD ID: 11784271
Description: ENCODES a protein that exhibits protein-folding chaperone binding (ortholog); TAP binding (ortholog); INVOLVED IN protection from natural killer cell mediated cytotoxicity (ortholog); regulation of dendritic cell differentiation (ortholog); regulation of interleukin-12 production (ortholog); ASSOCIATED WITH abacavir allergy (ortholog); Acute Anterior Uveitis (ortholog); acute retinal necrosis syndrome (ortholog); FOUND IN endoplasmic reticulum (ortholog); Golgi apparatus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: HLA class I histocompatibility antigen, B alpha chain; MHC class I antigen; PAPA-B; patr class I histocompatibility antigen, B-2 alpha chain
RGD Orthologs
Human
Mouse
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2545,922,418 - 45,926,176 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1641,883,973 - 41,887,389 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0631,106,562 - 31,109,933 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1631,996,784 - 32,000,234 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl631,997,381 - 32,000,067 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
abacavir allergy  (ISO)
Acute Anterior Uveitis  (ISO)
acute retinal necrosis syndrome  (ISO)
allergic asthma  (ISO)
allergic disease  (ISO)
alopecia  (ISO)
ankylosing spondylitis  (ISO)
anterior uveitis  (ISO)
asthma  (ISO)
autism spectrum disorder  (ISO)
Behcet's disease  (ISO)
birdshot chorioretinopathy  (ISO)
cerebral infarction  (ISO)
cervical cancer  (ISO)
Chemical and Drug Induced Liver Injury  (ISO)
Choroidal Neovascularization  (ISO)
colitis  (ISO)
COVID-19  (ISO)
cytomegalovirus retinitis  (ISO)
dermatitis  (ISO)
dermatomyositis  (ISO)
Diabetic Nephropathies  (ISO)
diabetic retinopathy  (ISO)
Diffuse Panbronchiolitis  (ISO)
drug allergy  (ISO)
Drug Eruptions  (ISO)
Drug-Related Side Effects and Adverse Reactions  (ISO)
Eales Disease  (ISO)
erythema nodosum  (ISO)
exanthem  (ISO)
Experimental Autoimmune Uveitis  (ISO)
Genetic Predisposition to Disease  (ISO)
Graves' disease  (ISO)
Hearing Loss, Unilateral Sensorineural  (ISO)
high grade glioma  (ISO)
human immunodeficiency virus infectious disease  (ISO)
megacolon  (ISO)
Meniere's disease  (ISO)
mitral valve prolapse  (ISO)
myasthenia gravis  (ISO)
Nasal Polyps  (ISO)
nephritis  (ISO)
occupational asthma  (ISO)
otosclerosis  (ISO)
Presumed Ocular Histoplasmosis Syndrome  (ISO)
proteasome-associated autoinflammatory syndrome 1  (ISO)
proteinuria  (ISO)
reactive arthritis  (ISO)
retinal vasculitis  (ISO)
retinopathy of prematurity  (ISO)
sarcoidosis  (ISO)
sensorineural hearing loss  (ISO)
severe acute respiratory syndrome  (ISO)
Spondylarthritis  (ISO)
spondyloarthropathy  (ISO)
Stevens-Johnson syndrome  (ISO)
synovitis  (ISO)
Takayasu's arteritis  (ISO)
thrombophlebitis  (ISO)
Thyrotoxic Periodic Paralysis  (ISO)
trachoma  (ISO)
Transplant Rejection  (ISO)
Trichiasis  (ISO)
tuberculosis  (ISO)
uveal melanoma  (ISO)
uveitis  (ISO)

References
Additional References at PubMed
PMID:8016085   PMID:21868630   PMID:22301074   PMID:28348269   PMID:30032202  


Genomics

Comparative Map Data
LOC100982859
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2545,922,418 - 45,926,176 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1641,883,973 - 41,887,389 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0631,106,562 - 31,109,933 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1631,996,784 - 32,000,234 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl631,997,381 - 32,000,067 (-)Ensemblpanpan1.1panPan2
HLA-B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38631,353,875 - 31,357,179 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl631,353,872 - 31,367,067 (-)EnsemblGRCh38hg38GRCh38
GRCh37631,321,652 - 31,324,956 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36631,429,628 - 31,432,914 (-)NCBINCBI36Build 36hg18NCBI36
Build 34631,429,629 - 31,432,914NCBI
Celera632,921,554 - 32,924,897 (-)NCBICelera
Cytogenetic Map6p21.33NCBI
HuRef631,112,051 - 31,115,393 (-)NCBIHuRef
CHM1_1631,323,557 - 31,326,920 (-)NCBICHM1_1
T2T-CHM13v2.0631,209,767 - 31,213,072 (-)NCBIT2T-CHM13v2.0
H2-M2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391737,791,742 - 37,794,445 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1737,791,742 - 37,794,443 (-)EnsemblGRCm39 Ensembl
GRCm381737,480,851 - 37,483,554 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1737,480,851 - 37,483,552 (-)EnsemblGRCm38mm10GRCm38
MGSCv371737,617,796 - 37,620,474 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361737,088,904 - 37,091,582 (-)NCBIMGSCv36mm8
Celera1740,921,406 - 40,924,072 (-)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1719.16NCBI
DLA-64
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.112983,573 - 986,969 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha121,119,986 - 1,123,382 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0121,128,741 - 1,132,125 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl121,078,335 - 1,172,648 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.112987,659 - 991,030 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0121,056,161 - 1,059,718 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0121,122,932 - 1,126,491 (+)NCBIUU_Cfam_GSD_1.0


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003831606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024929091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide DQ026310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ026311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ026312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JARIFH020000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF974059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KX786189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KX786191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KX786194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KX786195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KX786198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KX786199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KX786205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY613117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY613118 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY613119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY613120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY613121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY613122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY613123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY613124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY613125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY613126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY613127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY613128 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY613129 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY652690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY652691 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY652693 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY652694 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY652697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY652701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY652702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY652703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY652704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY964062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY964063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MW039484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MW039485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MW039487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  ON936819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U05575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U05576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U05577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U05578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSPPAT00000035771   ⟹   ENSPPAP00000013103
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl631,997,381 - 32,000,067 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000035773   ⟹   ENSPPAP00000013105
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl631,997,889 - 32,000,067 (-)Ensembl
RefSeq Acc Id: XM_003831606   ⟹   XP_003831654
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2545,922,418 - 45,926,176 (-)NCBI
NHGRI_mPanPan1641,883,973 - 41,887,389 (-)NCBI
Mhudiblu_PPA_v0631,106,562 - 31,109,933 (-)NCBI
PanPan1.1631,996,786 - 32,000,234 (-)NCBI
Sequence:
RefSeq Acc Id: XM_024929091   ⟹   XP_024784859
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2545,922,418 - 45,925,833 (-)NCBI
NHGRI_mPanPan1641,883,973 - 41,887,389 (-)NCBI
Mhudiblu_PPA_v0631,106,562 - 31,109,933 (-)NCBI
PanPan1.1631,996,784 - 32,000,234 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003831654 (Get FASTA)   NCBI Sequence Viewer  
  XP_024784859 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA50178 (Get FASTA)   NCBI Sequence Viewer  
  AAA50179 (Get FASTA)   NCBI Sequence Viewer  
  AAA50180 (Get FASTA)   NCBI Sequence Viewer  
  AAA50181 (Get FASTA)   NCBI Sequence Viewer  
  AAY59431 (Get FASTA)   NCBI Sequence Viewer  
  AAY59432 (Get FASTA)   NCBI Sequence Viewer  
  AAY59433 (Get FASTA)   NCBI Sequence Viewer  
  AEN79488 (Get FASTA)   NCBI Sequence Viewer  
  ARD71697 (Get FASTA)   NCBI Sequence Viewer  
  ARD71699 (Get FASTA)   NCBI Sequence Viewer  
  ARD71702 (Get FASTA)   NCBI Sequence Viewer  
  ARD71703 (Get FASTA)   NCBI Sequence Viewer  
  ARD71706 (Get FASTA)   NCBI Sequence Viewer  
  ARD71707 (Get FASTA)   NCBI Sequence Viewer  
  ARD71713 (Get FASTA)   NCBI Sequence Viewer  
  ASK05130 (Get FASTA)   NCBI Sequence Viewer  
  ASK05131 (Get FASTA)   NCBI Sequence Viewer  
  ASK05132 (Get FASTA)   NCBI Sequence Viewer  
  ASK05133 (Get FASTA)   NCBI Sequence Viewer  
  ASK05134 (Get FASTA)   NCBI Sequence Viewer  
  ASK05135 (Get FASTA)   NCBI Sequence Viewer  
  ASK05136 (Get FASTA)   NCBI Sequence Viewer  
  ASK05137 (Get FASTA)   NCBI Sequence Viewer  
  ASK05138 (Get FASTA)   NCBI Sequence Viewer  
  ASK05139 (Get FASTA)   NCBI Sequence Viewer  
  ASK05140 (Get FASTA)   NCBI Sequence Viewer  
  ASK05141 (Get FASTA)   NCBI Sequence Viewer  
  ASK05142 (Get FASTA)   NCBI Sequence Viewer  
  ASS83777 (Get FASTA)   NCBI Sequence Viewer  
  ASS83778 (Get FASTA)   NCBI Sequence Viewer  
  AST23043 (Get FASTA)   NCBI Sequence Viewer  
  AST23044 (Get FASTA)   NCBI Sequence Viewer  
  AST23046 (Get FASTA)   NCBI Sequence Viewer  
  AST23047 (Get FASTA)   NCBI Sequence Viewer  
  AST23050 (Get FASTA)   NCBI Sequence Viewer  
  AST23054 (Get FASTA)   NCBI Sequence Viewer  
  AST23055 (Get FASTA)   NCBI Sequence Viewer  
  AST23056 (Get FASTA)   NCBI Sequence Viewer  
  AST23057 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000013103.1
  ENSPPAP00000013105.1
GenBank Protein UKU10426 (Get FASTA)   NCBI Sequence Viewer  
  UKU10427 (Get FASTA)   NCBI Sequence Viewer  
  UKU10429 (Get FASTA)   NCBI Sequence Viewer  
  WCD67577 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_003831654   ⟸   XM_003831606
- Peptide Label: isoform X2
- UniProtKB: G3GN07 (UniProtKB/TrEMBL),   A0A220QK44 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_024784859   ⟸   XM_024929091
- Peptide Label: isoform X1
- UniProtKB: A0A2R9A763 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSPPAP00000013105   ⟸   ENSPPAT00000035773
Ensembl Acc Id: ENSPPAP00000013103   ⟸   ENSPPAT00000035771
Protein Domains
Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000029716 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000035771.1 UniProtKB/TrEMBL
  ENSPPAT00000035773.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
  3.30.500.10 UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig/MHC_CS UniProtKB/TrEMBL
  Ig_C1-set UniProtKB/TrEMBL
  MHC_class-I_related UniProtKB/TrEMBL
  MHC_I-like_Ag-recog UniProtKB/TrEMBL
  MHC_I-like_Ag-recog_sf UniProtKB/TrEMBL
  MHC_I/II-like_Ag-recog UniProtKB/TrEMBL
  MHC_I_a_a1/a2 UniProtKB/TrEMBL
  MHC_I_a_C UniProtKB/TrEMBL
KEGG Report pps:100982859 UniProtKB/TrEMBL
NCBI Gene LOC100982859 ENTREZGENE
PANTHER HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, ALPHA CHAIN H-RELATED UniProtKB/TrEMBL
  HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B ALPHA CHAIN UniProtKB/TrEMBL
  MHC CLASS I-RELATED UniProtKB/TrEMBL
Pfam C1-set UniProtKB/TrEMBL
  MHC_I UniProtKB/TrEMBL
  MHC_I_C UniProtKB/TrEMBL
PRINTS MHCCLASSI UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
  IG_MHC UniProtKB/TrEMBL
SMART IGc1 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
  SSF54452 UniProtKB/TrEMBL
UniProt A0A220QK44 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9A763 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9A879_PANPA UniProtKB/TrEMBL
  G3GN07 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-03-13 LOC100982859  class I histocompatibility antigen, Gogo-B*0101 alpha chain  LOC100982859  HLA class I histocompatibility antigen, B alpha chain  Symbol and/or name change 5135510 APPROVED
2023-04-25 LOC100982859  HLA class I histocompatibility antigen, B alpha chain  LOC100982859  patr class I histocompatibility antigen, B-2 alpha chain  Symbol and/or name change 5135510 APPROVED
2020-07-01 LOC100982859  patr class I histocompatibility antigen, B-2 alpha chain  LOC100982859  class I histocompatibility antigen, Gogo-B*0101 alpha chain  Symbol and/or name change 5135510 APPROVED