LOC100978434 (C-type lectin domain family 4 member M) - Rat Genome Database

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Gene: LOC100978434 (C-type lectin domain family 4 member M) Pan paniscus
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Symbol: LOC100978434
Name: C-type lectin domain family 4 member M
RGD ID: 11763478
Description: ENCODES a protein that exhibits (1->3)-beta-D-glucan binding (ortholog); calcium-dependent protein binding (ortholog); D-mannose binding (ortholog); INVOLVED IN detection of bacterium (ortholog); detection of yeast (ortholog); endocytosis (ortholog); ASSOCIATED WITH bacteriuria (ortholog); Chronic Hepatitis C (ortholog); extrapulmonary tuberculosis (ortholog); FOUND IN external side of plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: CLEC4M; immunity adhesion receptor L-SIGN
RGD Orthologs
Human
Mouse
Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22012,444,554 - 12,450,929 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11911,561,684 - 11,568,043 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0197,062,961 - 7,069,381 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1197,916,430 - 7,922,634 (+)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
LOC100978434
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22012,444,554 - 12,450,929 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11911,561,684 - 11,568,043 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0197,062,961 - 7,069,381 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1197,916,430 - 7,922,634 (+)NCBIpanpan1.1PanPan1.1panPan2
CLEC4M
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38197,763,243 - 7,769,605 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl197,763,210 - 7,769,605 (+)EnsemblGRCh38hg38GRCh38
GRCh37197,828,129 - 7,834,491 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36197,734,081 - 7,740,491 (+)NCBINCBI36Build 36hg18NCBI36
Celera197,699,445 - 7,705,764 (+)NCBICelera
Cytogenetic Map19p13.2NCBI
HuRef197,498,098 - 7,504,416 (+)NCBIHuRef
CHM1_1197,827,770 - 7,834,226 (+)NCBICHM1_1
T2T-CHM13v2.0197,764,262 - 7,770,624 (+)NCBIT2T-CHM13v2.0
Cd209b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3983,967,655 - 3,976,841 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl83,967,655 - 3,976,844 (-)EnsemblGRCm39 Ensembl
GRCm3883,917,655 - 3,926,841 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl83,917,655 - 3,926,844 (-)EnsemblGRCm38mm10GRCm38
MGSCv3783,917,657 - 3,926,814 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3683,917,657 - 3,926,814 (-)NCBIMGSCv36mm8
Celera83,005,643 - 3,014,800 (-)NCBICelera
Cytogenetic Map8A1.1NCBI
cM Map81.92NCBI
Clec4m
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8126,713,795 - 6,722,414 (-)NCBIGRCr8
mRatBN7.2121,915,902 - 1,924,529 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl121,915,919 - 1,924,539 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx122,594,215 - 2,602,852 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0123,217,785 - 3,226,422 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0121,980,552 - 1,989,192 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0122,817,633 - 2,826,303 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl122,816,065 - 2,826,378 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0124,967,129 - 4,975,729 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4122,256,452 - 2,265,053 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera123,768,182 - 3,776,781 (-)NCBICelera
Cytogenetic Map12p12NCBI


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_057300521   ⟹   XP_057156504
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22012,444,554 - 12,450,929 (+)NCBI
NHGRI_mPanPan11911,561,684 - 11,568,043 (+)NCBI
Protein Sequences
Protein RefSeqs XP_057156504 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein ABW34400 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_057156504   ⟸   XM_057300521
- UniProtKB: B2BSM3 (UniProtKB/TrEMBL)
Protein Domains
C-type lectin


Additional Information

Database Acc Id Source(s)
Gene3D-CATH Mannose-Binding Protein A, subunit A UniProtKB/TrEMBL
InterPro C-type_lectin-like UniProtKB/TrEMBL
  C-type_lectin-like/link_sf UniProtKB/TrEMBL
  C-type_lectin/snaclec_domain UniProtKB/TrEMBL
  C-type_lectin_CS UniProtKB/TrEMBL
  CD209-like_CTLD UniProtKB/TrEMBL
  CTDL_fold UniProtKB/TrEMBL
NCBI Gene CLEC4M ENTREZGENE
PANTHER MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED UniProtKB/TrEMBL
Pfam Lectin_C UniProtKB/TrEMBL
PROSITE C_TYPE_LECTIN_1 UniProtKB/TrEMBL
  C_TYPE_LECTIN_2 UniProtKB/TrEMBL
SMART CLECT UniProtKB/TrEMBL
Superfamily-SCOP C-type lectin-like UniProtKB/TrEMBL
UniProt B2BSM3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-03-13 LOC100978434  C-type lectin domain family 4 member M  CLEC4M  C-type lectin domain family 4 member M  Symbol and/or name change 5135510 APPROVED
2023-06-21 CLEC4M  C-type lectin domain family 4 member M  LOC100978434  C-type lectin domain family 4 member M  Symbol and/or name change 5135510 APPROVED
2018-05-08 LOC100978434  C-type lectin domain family 4 member M  CLEC4M    Symbol and/or name change 5135510 APPROVED