Advanced Search (OLGA)

Gene: CPEB3 (cytoplasmic polyadenylation element binding protein 3) Pan paniscus

Analyze

Symbol:

CPEB3

Name:

cytoplasmic polyadenylation element binding protein 3

RGD ID:

11754544

Description:

ENCODES a protein that exhibits mRNA 3'-UTR AU-rich region binding (ortholog); RNA stem-loop binding (ortholog); INVOLVED IN long-term memory (ortholog); negative regulation of cytoplasmic translational elongation (ortholog); negative regulation of translation (ortholog); ASSOCIATED WITH genetic disease (ortholog); hepatocellular carcinoma (ortholog); FOUND IN apical dendrite (ortholog); dendrite (ortholog); glutamatergic synapse (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

cytoplasmic polyadenylation element-binding protein 3; cytoplasmic polyadenylation element-binding protein 3-like; LOC103782818

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	104,085,024 - 104,329,699 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	104,090,340 - 104,334,928 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	88,794,186 - 89,038,808 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	92,314,573 - 92,505,160 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	92,320,240 - 92,506,089 (-)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

hepatocellular carcinoma (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

3'-UTR-mediated mRNA destabilization (IEA)

cellular response to amino acid stimulus (IEA)

long-term memory (ISO)

negative regulation of cytoplasmic translation (IEA)

negative regulation of cytoplasmic translational elongation (ISO)

negative regulation of transcription by RNA polymerase II (IEA)

negative regulation of translation (IEA,ISO)

positive regulation of dendritic spine development (ISO)

positive regulation of long-term synaptic potentiation (ISO)

positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay (IEA)

positive regulation of nuclear-transcribed mRNA poly(A) tail shortening (IEA)

positive regulation of translation (ISO)

regulation of dendritic spine development (ISO)

regulation of postsynapse assembly (ISO)

regulation of synaptic plasticity (ISO)

regulation of translation (IEA)

thermoception (ISO)

translation (IEA,ISO)

Cellular Component

apical dendrite (ISO)

CCR4-NOT complex (IEA)

cytoplasm (IEA)

cytosol (IEA)

dendrite (ISO)

glutamatergic synapse (ISO)

midbody (IEA)

neuron projection (IEA)

nucleoplasm (IEA)

nucleus (IEA)

plasma membrane (IEA)

postsynapse (ISO)

synapse (IEA)

Molecular Function

mRNA 3'-UTR AU-rich region binding (ISO)

mRNA 3'-UTR binding (IEA)

mRNA regulatory element binding translation repressor activity (IEA)

protein binding (ISO)

ribosome binding (IEA)

RNA binding (IEA)

RNA stem-loop binding (ISO)

translation factor activity, RNA binding (IEA)

translation regulator activity (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

CPEB3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	104,085,024 - 104,329,699 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	104,090,340 - 104,334,928 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	88,794,186 - 89,038,808 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	92,314,573 - 92,505,160 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	92,320,240 - 92,506,089 (-)	Ensembl	panpan1.1		panPan2

CPEB3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	92,046,692 - 92,291,233 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	92,046,692 - 92,291,078 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	10	93,806,449 - 94,050,835 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	93,798,379 - 94,040,824 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	10	93,798,378 - 94,040,824	NCBI
Celera	10	87,552,931 - 87,795,403 (-)	NCBI		Celera
Cytogenetic Map	10	q23.32	NCBI
HuRef	10	87,437,158 - 87,679,427 (-)	NCBI		HuRef
CHM1_1	10	94,090,164 - 94,332,641 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	10	92,929,099 - 93,173,600 (-)	NCBI		T2T-CHM13v2.0

Cpeb3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	36,996,742 - 37,185,018 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	36,998,691 - 37,186,000 (-)	Ensembl		GRCm39 Ensembl
GRCm38	19	37,019,341 - 37,207,620 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	37,021,291 - 37,208,601 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	19	37,095,781 - 37,281,783 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	19	37,086,435 - 37,272,437 (-)	NCBI		MGSCv36	mm8
Celera	19	37,797,394 - 37,982,920 (-)	NCBI		Celera
Cytogenetic Map	19	C2	NCBI
cM Map	19	32.08	NCBI

Cpeb3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	244,161,690 - 244,343,765 (-)	NCBI		GRCr8
mRatBN7.2	1	234,749,138 - 234,931,219 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	234,751,733 - 234,931,560 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	1	255,660,165 - 255,842,671 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	255,665,238 - 255,815,733 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	263,136,022 - 263,287,546 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	241,298,277 - 241,444,908 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	1	231,841,304 - 232,022,582 (-)	NCBI		Celera
Cytogenetic Map	1	q53	NCBI

Cpeb3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955425	1,057,575 - 1,224,300 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955425	1,032,446 - 1,224,300 (+)	NCBI	ChiLan1.0	ChiLan1.0

CPEB3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	28	6,523,894 - 6,724,010 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	28	6,529,212 - 6,723,454 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	28	6,699,976 - 6,899,667 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	28	6,778,232 - 6,978,042 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	28	6,782,197 - 6,944,731 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	28	6,504,095 - 6,703,882 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	28	6,537,767 - 6,737,510 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	28	6,702,474 - 6,902,192 (-)	NCBI		UU_Cfam_GSD_1.0

Cpeb3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	40,834,279 - 40,983,848 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936601	2,470,036 - 2,610,942 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936601	2,470,021 - 2,616,451 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CPEB3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	103,675,175 - 103,871,227 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	103,675,164 - 103,871,245 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	113,188,346 - 113,384,008 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CPEB3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	85,325,768 - 85,569,192 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	85,331,466 - 85,525,688 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666048	46,060,930 - 46,303,193 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cpeb3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624737	3,355,360 - 3,542,731 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624737	3,352,064 - 3,570,317 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_008950688	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034931093	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034931094	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034931095	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034931096	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034931097	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034931098	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034931099	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034931100	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055093134	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055093135	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055093136	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055093137	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063607814	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSPPAT00000039560 ⟹ ENSPPAP00000016861

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	10	92,320,240 - 92,506,089 (-)	Ensembl

RefSeq Acc Id:

XM_008950688 ⟹ XP_008948936

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	8	104,085,024 - 104,329,543 (-)	NCBI
NHGRI_mPanPan1	10	104,090,340 - 104,334,859 (-)	NCBI
Mhudiblu_PPA_v0	10	88,794,186 - 89,038,747 (-)	NCBI
PanPan1.1	10	92,314,573 - 92,505,160 (-)	NCBI

Sequence:

show sequence

CCCCATCTCGCCGCTCAAAAAGCCCTTCTCCAGCAACGTGATCGCGCCGCCCAAGTTCCCTCGC
GCGGCCCCTCTCACTTCCAAGTCCTGGATGGAGGATAACGCTTTCCGGACGGATAATGGTAACA
ATCTGTTGCCATTTCAGGACCGGAGTAGGCCCTATGATACTTTTAACTTGCACTCGTTGGAGAA
CTCCTTAATGGATATGATAAGGACTGATCATGAGCCTCTGAAAGGTAAACACTACCCTCCCAGT
GGCCCAGCAATGAGTTTCGCTGATATAATGTGGAGGAATCATTTTGCAGGACGCATGGGGATAA
ATTTCCATCATCCAGGAACAGATAATATTATGGCACTTAACAGTCGATCTTCTCTCTTTCCCTT
TGAAGATGCCTTCCTGGATGATAGCCACGGTGATCAGGCCTTGTCATCTGGCTTAAGTTCTCCC
ACTCGCTGTCAAAATGGGGAACGAGTAGAACGCTACTCTAGAAAGGTGTTTGTTGGAGGACTTC
CTCCTGATATTGATGAAGATGAGATCACTGCCAGCTTTCGCAGGTTTGGACCTCTCGTAGTAGA
CTGGCCTCACAAAGCTGAAAGCAAGTCTTATTTTCCTCCTAAAGGCTATGCCTTTCTGCTGTTC
CAAGAGGAAAGCTCAGTACAAGCTTTGATAGATGCCTGCCTAGAAGAAGATGGGAAACTCTACC
TGTGTGTGTCAAGCCCCACCATCAAGGACAAGCCAGTGCAAATTCGACCATGGAACCTAAGTGA
CAGTGACTTTGTAATGGATGGTTCTCAGCCTTTGGACCCCAGAAAAACTATCTTTGTTGGGGGA
GTTCCACGACCCCTTCGAGCTGTTGAACTGGCAATGATCATGGACCGTTTGTATGGTGGTGTCT
GCTATGCTGGCATTGATACGGACCCAGAGCTGAAGTACCCCAAAGGTGCTGGCCGCGTGGCATT
CTCCAATCAGCAGAGTTACATTGCAGCCATCAGCGCTCGTTTTGTGCAGCTTCAGCACAATGAC
ATTGACAAACGGGTTGAAGTAAAGCCATATGTGCTGGATGATCAGATGTGTGATGAGTGCCAGG
GCACACGCTGTGGTGGGAAGTTTGCCCCGTTCTTCTGTGCCAACGTCACCTGTCTGCAGTATTA
CTGTGAATACTGCTGGGCGAGCATACATTCCCGAGCCGGGCGGGAGTTCCACAAACCGCTGGTG
AAGGAGGGAGGCGACCGCCCTCGTCACGTCCCGTTCCGCTGGAGCTGAGCCACGGGCCGACCCA
GCCACAAGTACTGGAGTAGATAACAAGGAGGGAAAAGAGAGGGCACTGCCTCAGGGCTTACAGT
GTTCTGGAAATCTGTGCATTCGTTCTCGATTTTTAAAGAAGAATTGGGTCTTATTATTATTATT
ATTATTATTTACAGTCATATTACTGAACTCAGTGTCCAGTATAATGCAGAATTGCAGAGTGTAG
AATGGTACTGATTTGCACTTTGATTCACACCTTTGTCTGCTTGGTACCTTAATTTTTATACCTG
ATTTGTCACTCGTGACAGTATGTAGACTGCCATTCTCATCAGCGGCCGTCAGGCTACTGTCTGT
GATTCTTTTGTTTGTTGTTGTGGTGGTGTTGTTCTGATTGTTTTGAACTGGAGCATGCACTTAT
TTTCAGAAACTTAGAGAGTTGCCCCTAGGACAAGACTTACCAAAGGTAATACTCGTGAGTAGGT
GGCAGATGTAGCAAAAACTTCACAACAATTCAGCAATCATTAGCTCGGGTCACTTAGAGTAAGG
ATAACCCTTCATGAAAATAAGCCTTTAGTTGCTCTCTATTTTGACTTGTAAGGATACCTCATAA
GCTGGATCTTTTATTTTTCCTTCATGTTTGATTTTTGTTTTGCCGAGGATTTTGGTTAGATCTT
TTAGTATTATGTAAATTTATGCTGCAATAGCTTTTGCTGCTATTAAAATGGTATTATTAATACC
ATAATACTCTATTCAGGCTAGGATATCAATTAAACACAAAAACCCAACAACACACTTTTGTGAT
TTTAGGGATAGAGTCAGCTGCCGAACGGAGATCAGAATAGACTTCAGAAAGCTTCGGTGGAAGG
TCACTATTTCTGACTGCATGTTTACTTAATCAGGTTGCTGCATGCAATAAATTTTATATCCAAT
GTCTAGTATAAAACGTTCCCACAATGCACAAATTAAGAATCTATATAAGCTATAAAAATACTCA
TTTTTTTAAAAAAGTTTTTTTCATTCAAAGAATTGGTAATTGACCGGAGGAAGGCATGCCTCAA
TAAATGGAATGCTCTGAATGGGAAGAGCCCATAACAGAATGACCTATATTACAACCGATATAAA
ACCTAGGTGTAGGATATTCTTCAAGCAAATTTGTGGATGGTAGATGAAGTACTTTGCGGTGCTC
TGTTATATATTGTGAAATTTATTTTATATAGTAAAGTGATTATGTCTAACTGTGATCAAACTTA
ACTGTTTAAAGCCTCTGTCAGACATTAATGAACTTGACAGTTCATAACTGATATATTATAAACT
AACACATGAGCTCTTAGTTACAATCTCTTAGTGCTTGCACCATTTTACATAGCTTCAGACCTTG
TCCAGAAAACCAAAGAGCTCATCTTAGCTTACAAACACTAAGAATATATACAGGATATAGAGAT
AAGTTGTCAGATTGACAAACTAGGCACATTTTTAAGAAAGTTGTGTAATGGTGATGCTAAAGAA
ATGTCTGTACAAAATAAGATGGCCTGGGCAGAGTTGGTTGTCTGAGTGAGAAACTAACTACTTA
ATTCCCTGGATTTATCCTGTTAAGCTTGAGTAGAATGAAGGCCTGCTAGCACTAGCGTGGTCTA
GAATGAAGGCCTGCTAGCACTAGTGTGGTCTAGAGTGAAGGCCTGCTAGCACTAGCGTGGTCTA
GAGTGAAGGCCTGCTAGCACTAGCGTGGTCTAGAGTGAAGGCCTGCTAGCACTAGCGTGGTCTA
GAATGAAGGCCTGCTAGCACTAGCGTGGACATTTTTCTAGCATTCACCCTTGGGCTGCAGATAG
TAATATATAAACACACACAATGATTGCAAGACTATGTAAATCTTTTTTTAATCTTCTTCCTATG
TTTTGGAATTCTGGGGACAATCTGACTGGATATGACACTGCAGAATAGATTTAAGTCGCTGTGT
TTTCTGTGCTGTGATGTCCTTGTACTGTCTTAAGTTAGTGTTGCTTGTTTTTGTTTTGTTCTCC
CATGTTTAGTTGCAATTACTGGCTCTCAAGCTATAGTTTGTTTTCAAAAAGGAAAAACAAAATA
GTTTTTTACTGGATTAAAAATGCTTATTTTAGAATCCTCCCCTTTTTGAGGCTTTTTGGTAATA
ATTGCTTTTTTCCAGCCCAGGTGTGGTTTTGTTTGTTTTTTTCTATGTTTGTGGGTTTTTTTTC
ATCTGTACAAGAAATTTTGTTATGCACTACTACTTTTTGTATTCTAGACAGTTTTCAAAAGTTG
GCAGATATTTTTTTTTTTTTTAAGGAAAAAGGCATGCTTTCTGACTGACATGATCTTTTGCAAT
ACCTCAATTTTGAAATATAGGAAAGAAAATGATATTTTCTAAGTAAGTTTATTCAGAAAAATAT
ATATTAATTTAATTCTGCAAGAAAATGATTTAACAGATGGGTAACTTTATTTTTTTCATGCTTA
TTTGTGTTTTTTGAAAATGAAGAAGTTAGAGCTTTATAACTATAATATTAAAGATCATATCTAA
CCTACAGAAATCTACCTAATTATGTGAAAGAAGCAAAACTTTTTGAAGAAGCACCCCTCTTTCA
TGTATTAAAATAACACTGAGATTTTTTTAAAAGCTGGAAGATTGTACAGCATAAAGCTAAAGTG
AAGGCAAAAAACATTGTCCTGAAGAATAGGTTACAAAAAATAAACTCCATTTGGTGCTGAAAGT
TGTGAATAGATGGTGGAAACTACTTTCCCTTAATTTGTATATTTCTAATCAAGTGTTGATTGTG
CGCGACTGACCAGGATTGTGAAAGAGTTCTTCTGTTTGTATTTTTTTAAAGAGAACTTTTTTAG
TTTATTAAATTATAACATGTTCCCTTTTGTTTTGTAAATAAATGTGCCCCCAAGTTGTTAATGT
TATATTAAAAGAGAGGGTCCTTCAAAAAAATTATTTTTTAAAACACAGAGGTGTTCTGACCTGC
AACTTGACTGGGAAGCCCCTGGGTAACACAGGTCCTGCTGTGGCCTTTCCTTGGTGTGACACTT
GAACTAGTCGATTTTTTGAAGGCTATAACCTAACCTCGACTATTTGTTGTTATGTGCAATACTG
TTTGTACTGTTTGTATAAAAAATAGAAAAAAAAAGAAAAGAAAAAAGGCATAAATCTTTATTGC
AGATTTATTTTCATTGCAAACTTTAGACATTGTGATTCACTGAAATCATTTTTCTACTGTCAAA
TATGTACCTTTTCTTCATGCTGGTATTTTTTCAATAGTAATGTAGCCTTTGTACTGAGACAAAT
TTTCATTGTTATTTTTAGAAAGATTTTTTGCTAAGAAAAAAATTAAACATATTTACATATTTTT
CATTTTATTTCGTATTTTCTTTAAGGAGTGCTTTCTCAATCATTAATAGAGTTGTTTCTGGGAG
GGACTTTCATATCTGGTCAATGTCATAATATTATTTTGTATTTTTATTGGAATAAATTAATTTT
ATGATGCTAATTCTTTAAAAGTTTATTTTTTTCATTTTCAGTTATTTTTGAAGCTAAAACCTTT
GTAATATTGTTACTAAAGTGTCTAGTTTTTTGAAATGCAAAGCTTTATGTATTAACTTGCTGAT
GTGGTTTACAATAGTGTGACAACGATGAAAATGGTTGGTTATGTAAAGTGATTGGAAATGTAAT
GGATAATTGGGTAATAAAATGACAGAATGAGCAGAACATGTGAGATTTTGAGAAGCCTTTTCCT
TTATCACAGTGGTTTAGTGTAAGACTAGGGATGTCACAGTGCAGTTCTCTAGGGATGTCACGGT
GGATTTATACAACACCAGGTGCAGCCAAACCTGTGGCCCTGAGAATGAAGTCACCCAACCGAAG
TACCACTGGGTTTAAAATCTGGCTAAGTCAACAGAATGTTTCATTGCTTTTTCCCCTCTAACTC
TTCATTATGTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAG
AGAGAGAGAGAACCTGCCACCAACTGCTGTCCTTGTGTGAGACAGTGCCTTTCTCCCAGGCCGA
ATCTTTTATGTGCACTGACAGTGGTGATATCGGAGTCATACAGGAAGTTGCTAAGAGGACACGG
CTTTCGTGGTGTACTGCAGACCTCACCTGCAGGGTCTCACTCATGCTGCCTCCCTGTAAGGCTC
AGTTGGTGGCACTGAGGAAGCACACTCGGATGTCACCACTGTCTGTGGACCCTGACTATGTGTC
GGGTTGCATCTTCCTCCACACCCATGCCTGCTTCCTGTTCTGGTGCCCCTTGCCTTTCATTGTG
GCAACTGCGTGCATGATCTGTCTGCCTTTCTGCTGCTGCTTTTCCAACACCCTCCTCACCTGGA
AGCTGGGCAGTTAAGGCACAGTCATTAATGTGTCATTGCAATAGCACCTACAGTCAAAGCAAAA
ACTACAACTGCAAAACTGGTGTTGCGTAAACAGAACAGCCAATGACTTGCTCCAGATAGATGAT
ATGTTTCTACTAGTGGTTGATGGCCTCTTTCAGCTCCATCGCTATGGAGGCGAGGTTCATCAAT
AACTCAGAGAAACTTGTGTCCAGAGTTGGTCTTGGGTATGCTCTATGTATTCAGTTTTGTAAAT
AATATATAGATTAGATCAAGTTGTGATGTAAAATTTTAACTCAAATTGGGTACTACTGGTTGGA
ATTTTACATTAACTACAAATAAATGATTAGGAACAGAAGAAAAGAAATCGGAAAATTCTTGCTT
AGTGGTATAAAGATTATGCTTAGATTTCTGCCTATATCTTGTGTTTTATAGCTTGTTAGTGAGG
CATGGGCTAATGCAGAATGTACTGCATTTATGCAATTAGCAAATAACTGCTAGTTTTCATTTTA
TCTATTATATTAGCAACAAAAATGGCATTTAACTGGGTAAAGCTCCTACCTAAATATTTGAGTA
TTGTGACATCTCTACTTGCAAGGTTTGAGTGAAAGATTAGTCACAGATTAGTGAAAAAAATGTA
TCTTTTTGTTAAAACTGGCTTATTTGAATGGATTGTTGCTTTTCACTAGCTTGTATGGTATGTC
AGCTAACATTTGTTTTTTTTTTCTTTTATAATAACCAAACTTCTCTATCTCAGCTGCAATAGTG
TTCCATCTTACCACAGAGTGTTTTAGAATTAATGCTGTTGACTTTATACCCCAAAATGGGTCAA
GAAGTGGCTATATGATTAGGGGATGTTTAAATTTGTATGACGACAAAGTTAATTGCAACAAGTA
GAAAACTTGGGTGCTAACACAGGATAACTTCTGCTCTTTTTCTTTCCTGGATATAGTTCTGTTG
GGGTATAAAGTATTAGGTATTTGTATTTTTTGCTGTCAAAATAATGGACTTAACTTTTAGAGTG
TTCACAGCTAAGATCTCTGTATTTGTTTTTCAACTAACAACTAATTTTAAATGTATTGTATCTT
TTATTACCTGTTCTCTTAGATTGTTTTTTGCTAGTAACCCTTACTCAGCTTCTGCCTTTGGGGC
TTGGACTAATATTGCTTGTATGGAACTACAGTACTGTGACTAAACATGGAGCTCAATGCAGCTA
CTGCTTAAAACTGCTTAAACTTTGTAGTTTGGACTTCATTTTTTTCTGTAATAACAACTTATTA
AATCTAGTTGTATGAAGTA

hide sequence

RefSeq Acc Id:

XM_034931093 ⟹ XP_034786984

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	8	104,085,024 - 104,278,405 (-)	NCBI
NHGRI_mPanPan1	10	104,090,340 - 104,283,720 (-)	NCBI
Mhudiblu_PPA_v0	10	88,799,860 - 88,987,560 (-)	NCBI

RefSeq Acc Id:

XM_034931094 ⟹ XP_034786985

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	8	104,085,024 - 104,280,626 (-)	NCBI
NHGRI_mPanPan1	10	104,090,340 - 104,285,941 (-)	NCBI
Mhudiblu_PPA_v0	10	88,799,860 - 88,989,782 (-)	NCBI

RefSeq Acc Id:

XM_034931095 ⟹ XP_034786986

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	8	104,085,024 - 104,278,563 (-)	NCBI
NHGRI_mPanPan1	10	104,090,340 - 104,283,886 (-)	NCBI
Mhudiblu_PPA_v0	10	88,799,860 - 88,987,724 (-)	NCBI

RefSeq Acc Id:

XM_034931096 ⟹ XP_034786987

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	8	104,085,024 - 104,329,699 (-)	NCBI
NHGRI_mPanPan1	10	104,090,340 - 104,334,928 (-)	NCBI
Mhudiblu_PPA_v0	10	88,799,860 - 89,038,808 (-)	NCBI

RefSeq Acc Id:

XM_034931097 ⟹ XP_034786988

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	8	104,085,024 - 104,329,384 (-)	NCBI
NHGRI_mPanPan1	10	104,090,340 - 104,334,705 (-)	NCBI
Mhudiblu_PPA_v0	10	88,799,860 - 89,038,747 (-)	NCBI

RefSeq Acc Id:

XM_034931098 ⟹ XP_034786989

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	8	104,085,024 - 104,329,535 (-)	NCBI
NHGRI_mPanPan1	10	104,090,340 - 104,334,851 (-)	NCBI
Mhudiblu_PPA_v0	10	88,794,186 - 89,038,747 (-)	NCBI

RefSeq Acc Id:

XM_034931099 ⟹ XP_034786990

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	8	104,085,024 - 104,329,483 (-)	NCBI
NHGRI_mPanPan1	10	104,090,340 - 104,334,799 (-)	NCBI
Mhudiblu_PPA_v0	10	88,794,186 - 89,038,747 (-)	NCBI

RefSeq Acc Id:

XM_034931100 ⟹ XP_034786991

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	8	104,085,024 - 104,329,535 (-)	NCBI
NHGRI_mPanPan1	10	104,090,340 - 104,334,851 (-)	NCBI
Mhudiblu_PPA_v0	10	88,794,186 - 89,038,747 (-)	NCBI

RefSeq Acc Id:

XM_055093134 ⟹ XP_054949109

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	8	104,085,024 - 104,280,628 (-)	NCBI
NHGRI_mPanPan1	10	104,090,340 - 104,285,944 (-)	NCBI

RefSeq Acc Id:

XM_055093135 ⟹ XP_054949110

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	8	104,085,024 - 104,278,405 (-)	NCBI
NHGRI_mPanPan1	10	104,090,340 - 104,283,720 (-)	NCBI

RefSeq Acc Id:

XM_055093136 ⟹ XP_054949111

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	8	104,085,024 - 104,280,628 (-)	NCBI
NHGRI_mPanPan1	10	104,090,340 - 104,285,944 (-)	NCBI

RefSeq Acc Id:

XM_055093137 ⟹ XP_054949112

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	8	104,085,024 - 104,329,404 (-)	NCBI
NHGRI_mPanPan1	10	104,090,340 - 104,334,720 (-)	NCBI

RefSeq Acc Id:

XM_063607814 ⟹ XP_063463884

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	8	104,085,024 - 104,278,405 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_008948936	(Get FASTA)	NCBI Sequence Viewer
	XP_034786984	(Get FASTA)	NCBI Sequence Viewer
	XP_034786985	(Get FASTA)	NCBI Sequence Viewer
	XP_034786986	(Get FASTA)	NCBI Sequence Viewer
	XP_034786987	(Get FASTA)	NCBI Sequence Viewer
	XP_034786988	(Get FASTA)	NCBI Sequence Viewer
	XP_034786989	(Get FASTA)	NCBI Sequence Viewer
	XP_034786990	(Get FASTA)	NCBI Sequence Viewer
	XP_034786991	(Get FASTA)	NCBI Sequence Viewer
	XP_054949109	(Get FASTA)	NCBI Sequence Viewer
	XP_054949110	(Get FASTA)	NCBI Sequence Viewer
	XP_054949111	(Get FASTA)	NCBI Sequence Viewer
	XP_054949112	(Get FASTA)	NCBI Sequence Viewer
	XP_063463884	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000016861.1

RefSeq Acc Id:	XP_008948936 ⟸ XM_008950688
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9AHN4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEDNAFRTDNGNNLLPFQDRSRPYDTFNLHSLENSLMDMIRTDHEPLKGKHYPPSGPAMSFADI MWRNHFAGRMGINFHHPGTDNIMALNSRSSLFPFEDAFLDDSHGDQALSSGLSSPTRCQNGERV ERYSRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEESSVQAL IDACLEEDGKLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVE LAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHNDIDKRVEVKP YVLDDQMCDECQGTRCGGKFAPFFCANVTCLQYYCEYCWASIHSRAGREFHKPLVKEGGDRPRH VPFRWS hide sequence

RefSeq Acc Id:	XP_034786991 ⟸ XM_034931100
- Peptide Label:	isoform X4
- UniProtKB:	A0A2R9AHN4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_034786990 ⟸ XM_034931099
- Peptide Label:	isoform X3
- UniProtKB:	A0A2R9AHN4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_034786989 ⟸ XM_034931098
- Peptide Label:	isoform X1
- UniProtKB:	A0A2R9AHN4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_034786987 ⟸ XM_034931096
- Peptide Label:	isoform X1
- UniProtKB:	A0A2R9AHN4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_034786988 ⟸ XM_034931097
- Peptide Label:	isoform X1
- UniProtKB:	A0A2R9AHN4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_034786985 ⟸ XM_034931094
- Peptide Label:	isoform X1
- UniProtKB:	A0A2R9AHN4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_034786986 ⟸ XM_034931095
- Peptide Label:	isoform X1
- UniProtKB:	A0A2R9AHN4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_034786984 ⟸ XM_034931093
- Peptide Label:	isoform X1
- UniProtKB:	A0A2R9AHN4 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSPPAP00000016861 ⟸ ENSPPAT00000039560

RefSeq Acc Id:	XP_054949112 ⟸ XM_055093137
- Peptide Label:	isoform X4
- UniProtKB:	A0A2R9AHN4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_054949111 ⟸ XM_055093136
- Peptide Label:	isoform X4
- UniProtKB:	A0A2R9AHN4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_054949109 ⟸ XM_055093134
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9AHN4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_054949110 ⟸ XM_055093135
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R9AHN4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063463884 ⟸ XM_063607814
- Peptide Label:	isoform X4
- UniProtKB:	A0A2R9AHN4 (UniProtKB/TrEMBL)

Protein Domains

RRM

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000031528	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000039560.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.70.330	UniProtKB/TrEMBL
	4.10.640.40	UniProtKB/TrEMBL
InterPro	CEBP_ZZ	UniProtKB/TrEMBL
	CEBP_ZZ_sf	UniProtKB/TrEMBL
	CPEB	UniProtKB/TrEMBL
	Nucleotide-bd_a/b_plait_sf	UniProtKB/TrEMBL
	RBD_domain_sf	UniProtKB/TrEMBL
	RRM_dom	UniProtKB/TrEMBL
NCBI Gene	CPEB3	ENTREZGENE
PANTHER	CYTOPLASMIC POLYADENYLATION ELEMENT-BINDING PROTEIN 3	UniProtKB/TrEMBL
	PTHR12566	UniProtKB/TrEMBL
Pfam	CEBP_ZZ	UniProtKB/TrEMBL
	RRM_7	UniProtKB/TrEMBL
PROSITE	RRM	UniProtKB/TrEMBL
SMART	RRM	UniProtKB/TrEMBL
Superfamily-SCOP	SSF54928	UniProtKB/TrEMBL
UniProt	A0A2R9AHN4	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2020-06-11	CPEB3	cytoplasmic polyadenylation element binding protein 3	LOC103782818	cytoplasmic polyadenylation element-binding protein 3-like	Data merged from RGD:11931665	737654	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD