ATG2A (autophagy related 2A) - Rat Genome Database

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Gene: ATG2A (autophagy related 2A) Pan paniscus
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Symbol: ATG2A
Name: autophagy related 2A
RGD ID: 11744683
Description: ENCODES a protein that exhibits lipid transfer activity (inferred); phosphatidylinositol-3-phosphate binding (inferred); protein-membrane adaptor activity (inferred); INVOLVED IN positive regulation of autophagy (ortholog); ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); glycogen storage disease V (ortholog); intellectual disability (ortholog); FOUND IN organelle membrane contact site (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: autophagy-related protein 2 homolog A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2966,121,645 - 66,144,329 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11167,164,614 - 67,187,278 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01160,251,169 - 60,273,831 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11163,591,896 - 63,614,902 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1163,591,896 - 63,614,902 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
ATG2A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2966,121,645 - 66,144,329 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11167,164,614 - 67,187,278 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01160,251,169 - 60,273,831 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11163,591,896 - 63,614,902 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1163,591,896 - 63,614,902 (-)Ensemblpanpan1.1panPan2
ATG2A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381164,894,546 - 64,917,209 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1164,894,546 - 64,917,209 (-)EnsemblGRCh38hg38GRCh38
GRCh371164,662,018 - 64,684,681 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361164,418,595 - 64,441,239 (-)NCBINCBI36Build 36hg18NCBI36
Celera1161,988,071 - 62,010,793 (-)NCBICelera
Cytogenetic Map11q13.1NCBI
HuRef1160,989,036 - 61,011,754 (-)NCBIHuRef
CHM1_11164,545,786 - 64,568,503 (-)NCBICHM1_1
T2T-CHM13v2.01164,887,785 - 64,910,450 (-)NCBIT2T-CHM13v2.0
Atg2a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39196,291,508 - 6,312,332 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl196,291,698 - 6,312,365 (+)EnsemblGRCm39 Ensembl
GRCm38196,241,478 - 6,262,304 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl196,241,668 - 6,262,335 (+)EnsemblGRCm38mm10GRCm38
MGSCv37196,241,668 - 6,262,304 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36196,241,727 - 6,262,304 (+)NCBIMGSCv36mm8
Celera196,113,983 - 6,134,633 (+)NCBICelera
Cytogenetic Map19ANCBI
cM Map194.37NCBI
Atg2a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81212,971,822 - 212,991,505 (+)NCBIGRCr8
mRatBN7.21203,542,559 - 203,562,242 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1203,542,559 - 203,562,242 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1211,891,595 - 211,911,246 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01218,987,889 - 219,007,573 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01211,678,946 - 211,698,630 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01221,612,584 - 221,632,291 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1221,612,584 - 221,632,267 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01228,596,022 - 228,617,368 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41209,017,869 - 209,037,552 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1201,076,139 - 201,095,777 (+)NCBICelera
Cytogenetic Map1q43NCBI
Atg2a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542220,271,330 - 20,291,875 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542220,261,749 - 20,290,879 (+)NCBIChiLan1.0ChiLan1.0
ATG2A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11852,258,070 - 52,277,953 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1852,258,187 - 52,277,965 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1850,865,407 - 50,885,282 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01853,299,229 - 53,319,104 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1853,299,128 - 53,319,087 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11852,394,224 - 52,414,097 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01851,979,532 - 51,999,393 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01852,763,921 - 52,783,806 (+)NCBIUU_Cfam_GSD_1.0
Atg2a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049477,975,437 - 7,995,290 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365994,417,900 - 4,437,178 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365994,417,810 - 4,437,639 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATG2A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl27,262,031 - 7,282,347 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.127,261,819 - 7,282,614 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.226,393,343 - 6,413,661 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ATG2A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.119,316,567 - 9,339,244 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl19,316,675 - 9,339,265 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038106,702,929 - 106,725,744 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atg2a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476721,488,404 - 21,507,528 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476721,480,320 - 21,507,934 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000029691   ⟹   ENSPPAP00000007381
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1163,591,896 - 63,614,902 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000029694   ⟹   ENSPPAP00000007384
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1163,592,322 - 63,614,787 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000029699   ⟹   ENSPPAP00000007388
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1163,592,322 - 63,614,787 (-)Ensembl
RefSeq Acc Id: XM_003828593   ⟹   XP_003828641
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2966,121,645 - 66,144,312 (-)NCBI
NHGRI_mPanPan11167,164,614 - 67,187,261 (-)NCBI
Mhudiblu_PPA_v01160,251,169 - 60,273,831 (-)NCBI
PanPan1.11163,591,896 - 63,614,902 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008954021   ⟹   XP_008952269
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2966,121,645 - 66,144,325 (-)NCBI
NHGRI_mPanPan11167,164,614 - 67,187,261 (-)NCBI
Mhudiblu_PPA_v01160,251,169 - 60,273,830 (-)NCBI
PanPan1.11163,591,896 - 63,614,898 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008954022   ⟹   XP_008952270
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2966,121,645 - 66,144,329 (-)NCBI
NHGRI_mPanPan11167,164,614 - 67,187,278 (-)NCBI
Mhudiblu_PPA_v01160,251,169 - 60,273,830 (-)NCBI
PanPan1.11163,591,896 - 63,614,898 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034932959   ⟹   XP_034788850
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2966,121,645 - 66,144,312 (-)NCBI
NHGRI_mPanPan11167,164,614 - 67,187,261 (-)NCBI
Mhudiblu_PPA_v01160,251,169 - 60,273,830 (-)NCBI
RefSeq Acc Id: XM_063608200   ⟹   XP_063464270
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2966,121,645 - 66,144,133 (-)NCBI
RefSeq Acc Id: XP_003828641   ⟸   XM_003828593
- Peptide Label: isoform X2
- UniProtKB: A0A2R8ZQZ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008952270   ⟸   XM_008954022
- Peptide Label: isoform X3
- UniProtKB: A0A2R8ZQZ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008952269   ⟸   XM_008954021
- Peptide Label: isoform X1
- UniProtKB: A0A2R8ZQZ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034788850   ⟸   XM_034932959
- Peptide Label: isoform X4
- UniProtKB: A0A2R8ZQZ0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSPPAP00000007388   ⟸   ENSPPAT00000029699
Ensembl Acc Id: ENSPPAP00000007381   ⟸   ENSPPAT00000029691
Ensembl Acc Id: ENSPPAP00000007384   ⟸   ENSPPAT00000029694
RefSeq Acc Id: XP_063464270   ⟸   XM_063608200
- Peptide Label: isoform X5
- UniProtKB: A0A2R8ZQZ0 (UniProtKB/TrEMBL)

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000026591 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000029691.1 UniProtKB/TrEMBL
  ENSPPAT00000029694.1 UniProtKB/TrEMBL
  ENSPPAT00000029699.1 UniProtKB/TrEMBL
InterPro ATG2 UniProtKB/TrEMBL
  Autophagy-rel_C UniProtKB/TrEMBL
  VPS13-like_N UniProtKB/TrEMBL
KEGG Report pps:100968213 UniProtKB/TrEMBL
NCBI Gene ATG2A ENTREZGENE
PANTHER AUTOPHAGY-RELATED PROTEIN 2 HOMOLOG A UniProtKB/TrEMBL
  PTHR13190 UniProtKB/TrEMBL
Pfam ATG_C UniProtKB/TrEMBL
  Chorein_N UniProtKB/TrEMBL
UniProt A0A2R8ZQZ0 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8ZS66_PANPA UniProtKB/TrEMBL
  A0A2R8ZU55_PANPA UniProtKB/TrEMBL