LOC100978249 (beta-crystallin B2) - Rat Genome Database

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Gene: LOC100978249 (beta-crystallin B2) Pan paniscus
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Symbol: LOC100978249 (Ensembl: CRYBB3)
Name: beta-crystallin B2 (Ensembl:crystallin beta B3)
RGD ID: 11718628
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN camera-type eye development (ortholog); visual perception (ortholog); ASSOCIATED WITH autoimmune disease (ortholog); cataract (ortholog); cataract 3 multiple types (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: beta-crystallin B3; CRYBB2; CRYBB3; crystallin beta B2; crystallin beta B3
RGD Orthologs
Human
Mouse
Rat
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22335,091,568 - 35,130,667 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12237,790,037 - 37,829,122 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0226,153,824 - 6,186,786 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12223,832,570 - 24,266,719 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2223,819,784 - 23,827,265 (+)Ensemblpanpan1.1panPan2
PanPan1.1 Ensembl2223,819,784 - 23,827,265 (+)NCBIpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
LOC100978249
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22335,091,568 - 35,130,667 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12237,790,037 - 37,829,122 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0226,153,824 - 6,186,786 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12223,832,570 - 24,266,719 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2223,819,784 - 23,827,265 (+)Ensemblpanpan1.1panPan2
PanPan1.1 Ensembl2223,819,784 - 23,827,265 (+)NCBIpanpan1.1panPan2
CRYBB2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382225,211,661 - 25,231,869 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2225,212,564 - 25,231,870 (+)EnsemblGRCh38hg38GRCh38
GRCh372225,615,606 - 25,627,836 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362223,945,612 - 23,957,836 (+)NCBINCBI36Build 36hg18NCBI36
Build 342223,941,938 - 23,952,378NCBI
Celera229,419,940 - 9,432,156 (+)NCBICelera
Cytogenetic Map22q11.23ENTREZGENE
HuRef228,563,281 - 8,575,505 (+)NCBIHuRef
CHM1_12225,574,214 - 25,586,439 (+)NCBICHM1_1
T2T-CHM13v2.02225,672,859 - 25,693,033 (+)NCBIT2T-CHM13v2.0
Crybb2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395113,206,124 - 113,217,983 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5113,206,124 - 113,217,983 (-)EnsemblGRCm39 Ensembl
GRCm385113,058,258 - 113,070,117 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5113,058,258 - 113,070,117 (-)EnsemblGRCm38mm10GRCm38
MGSCv375113,487,285 - 113,497,786 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365113,298,568 - 113,309,069 (-)NCBIMGSCv36mm8
MGSCv365110,764,656 - 110,774,989 (-)NCBIMGSCv36mm8
Celera5110,185,744 - 110,188,631 (-)NCBICelera
Cytogenetic Map5FNCBI
cM Map555.38NCBI
Crybb2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81249,230,192 - 49,240,116 (+)NCBIGRCr8
mRatBN7.21243,569,747 - 43,579,671 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1243,569,747 - 43,579,671 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1244,736,097 - 44,746,023 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01245,348,959 - 45,358,883 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01244,409,487 - 44,419,411 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01249,577,580 - 49,588,555 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1249,578,633 - 49,588,555 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01251,351,267 - 51,361,440 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1245,165,513 - 45,175,496 (+)NCBICelera
Cytogenetic Map12q16NCBI
CRYBB2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12619,298,947 - 19,308,447 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2619,298,863 - 19,308,400 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2619,164,624 - 19,174,125 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02619,664,244 - 19,673,750 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2619,664,160 - 19,673,699 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12619,369,483 - 19,378,952 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02619,635,278 - 19,644,790 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02619,704,621 - 19,714,129 (+)NCBIUU_Cfam_GSD_1.0
Crybb2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118115,534,233 - 115,543,847 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936657326,882 - 336,556 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936657326,888 - 336,474 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CRYBB2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1443,209,311 - 43,220,837 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11443,206,138 - 43,220,833 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21446,029,737 - 46,043,679 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CRYBB2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1198,318,486 - 8,331,632 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl198,321,039 - 8,331,929 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045118,521,373 - 118,558,745 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Crybb2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247471,851,248 - 1,867,573 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247471,851,242 - 1,867,650 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000047476   ⟹   ENSPPAP00000024651
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2223,819,784 - 23,827,265 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000047478   ⟹   ENSPPAP00000024653
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2223,821,332 - 23,826,967 (+)Ensembl
RefSeq Acc Id: XM_034948913   ⟹   XP_034804804
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22335,096,632 - 35,106,555 (+)NCBI
NHGRI_mPanPan12237,798,559 - 37,805,020 (+)NCBI
Mhudiblu_PPA_v0226,153,824 - 6,162,698 (+)NCBI
RefSeq Acc Id: XM_034948916   ⟹   XP_034804807
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22335,108,405 - 35,130,667 (+)NCBI
NHGRI_mPanPan12237,806,861 - 37,829,122 (+)NCBI
Mhudiblu_PPA_v0226,166,671 - 6,186,786 (+)NCBI
RefSeq Acc Id: XM_055105449   ⟹   XP_054961424
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22335,100,516 - 35,130,667 (+)NCBI
NHGRI_mPanPan12237,798,577 - 37,829,122 (+)NCBI
RefSeq Acc Id: XM_055105450   ⟹   XP_054961425
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22335,091,568 - 35,130,667 (+)NCBI
NHGRI_mPanPan12237,790,037 - 37,829,122 (+)NCBI
RefSeq Acc Id: XM_055105451   ⟹   XP_054961426
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22335,101,812 - 35,130,667 (+)NCBI
NHGRI_mPanPan12237,798,577 - 37,829,122 (+)NCBI
RefSeq Acc Id: XP_034804804   ⟸   XM_034948913
- Peptide Label: isoform X4
- UniProtKB: A0A2R9B6F6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034804807   ⟸   XM_034948916
- Peptide Label: isoform X3
Ensembl Acc Id: ENSPPAP00000024651   ⟸   ENSPPAT00000047476
Ensembl Acc Id: ENSPPAP00000024653   ⟸   ENSPPAT00000047478
RefSeq Acc Id: XP_054961425   ⟸   XM_055105450
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054961424   ⟸   XM_055105449
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054961426   ⟸   XM_055105451
- Peptide Label: isoform X3

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000033834 ENTREZGENE, UniProtKB/TrEMBL
  ENSPPAG00000035463 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000044033.1 UniProtKB/TrEMBL
  ENSPPAT00000047476.1 UniProtKB/TrEMBL
  ENSPPAT00000047478.1 UniProtKB/TrEMBL
Gene3D-CATH Crystallins UniProtKB/TrEMBL
InterPro Beta/Gamma-Crystallin UniProtKB/TrEMBL
  Beta/gamma_crystallin UniProtKB/TrEMBL
  G_crystallin-like UniProtKB/TrEMBL
NCBI Gene CRYBB2 ENTREZGENE
PANTHER BETA/GAMMA CRYSTALLIN UniProtKB/TrEMBL
  PTHR11818:SF11 UniProtKB/TrEMBL
  PTHR11818:SF13 UniProtKB/TrEMBL
Pfam Crystall UniProtKB/TrEMBL
PRINTS BGCRYSTALLIN UniProtKB/TrEMBL
PROSITE CRYSTALLIN_BETA_GAMMA UniProtKB/TrEMBL
SMART XTALbg UniProtKB/TrEMBL
Superfamily-SCOP SSF49695 UniProtKB/TrEMBL
UniProt A0A2R9AVL3_PANPA UniProtKB/TrEMBL
  A0A2R9B4Z5_PANPA UniProtKB/TrEMBL
  A0A2R9B6F6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-07-01 LOC100978249  beta-crystallin B2  CRYBB2  crystallin beta B2  Symbol and/or name change 5135510 APPROVED
2020-06-11 CRYBB2  crystallin beta B2  CRYBB3  crystallin beta B3  Data merged from RGD:11850842 737654 PROVISIONAL