LYZL6 (lysozyme like 6) - Rat Genome Database

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Gene: LYZL6 (lysozyme like 6) Pan paniscus
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Symbol: LYZL6
Name: lysozyme like 6
RGD ID: 11718176
Description: ENCODES a protein that exhibits lysozyme activity (inferred); INVOLVED IN defense response to bacterium (inferred); fertilization (inferred); fusion of sperm to egg plasma membrane involved in single fertilization (inferred); FOUND IN sperm midpiece (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: lysozyme-like protein 6
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21928,534,182 - 28,543,367 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11730,413,179 - 30,422,364 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01720,852,333 - 20,861,505 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11721,147,928 - 21,157,112 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1721,147,928 - 21,157,112 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LYZL6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21928,534,182 - 28,543,367 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11730,413,179 - 30,422,364 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01720,852,333 - 20,861,505 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11721,147,928 - 21,157,112 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1721,147,928 - 21,157,112 (+)Ensemblpanpan1.1panPan2
LYZL6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381735,934,518 - 35,943,713 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1735,934,518 - 35,943,713 (-)EnsemblGRCh38hg38GRCh38
GRCh371734,261,522 - 34,270,717 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361731,285,638 - 31,290,623 (-)NCBINCBI36Build 36hg18NCBI36
Build 341731,285,637 - 31,290,623NCBI
Celera1731,171,081 - 31,176,066 (-)NCBICelera
Cytogenetic Map17q12NCBI
HuRef1730,446,535 - 30,455,714 (-)NCBIHuRef
CHM1_11734,326,089 - 34,335,270 (-)NCBICHM1_1
T2T-CHM13v2.01736,882,425 - 36,891,620 (-)NCBIT2T-CHM13v2.0
Lyzl6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911103,521,894 - 103,529,716 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11103,521,896 - 103,529,716 (-)EnsemblGRCm39 Ensembl
GRCm3811103,631,068 - 103,638,890 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11103,631,070 - 103,638,890 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711103,492,387 - 103,500,188 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611103,447,163 - 103,454,964 (-)NCBIMGSCv36mm8
Celera11115,343,584 - 115,351,367 (-)NCBICelera
Cytogenetic Map11E1NCBI
cM Map1167.4NCBI
Lyzl6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81089,044,375 - 89,049,210 (-)NCBIGRCr8
mRatBN7.21088,544,342 - 88,549,177 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1088,544,342 - 88,549,177 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1093,582,729 - 93,587,545 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01093,047,873 - 93,052,703 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01088,441,226 - 88,446,058 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01091,694,547 - 91,701,428 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1091,694,547 - 91,699,424 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01091,461,085 - 91,466,620 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41092,787,372 - 92,792,857 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11092,801,878 - 92,817,736 (-)NCBI
Celera1087,243,913 - 87,248,691 (-)NCBICelera
Cytogenetic Map10q32.1NCBI
Lyzl6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955481223,484 - 237,975 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955481225,132 - 273,565 (-)NCBIChiLan1.0ChiLan1.0
LOC480492
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1910,267,569 - 10,275,791 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha910,022,673 - 10,030,834 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0911,858,075 - 11,866,303 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1910,868,732 - 10,876,938 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0916,645,058 - 16,653,283 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0916,592,131 - 16,600,362 (-)NCBIUU_Cfam_GSD_1.0
Lyzl6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560217,388,059 - 17,393,385 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365411,801,350 - 1,804,908 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365411,801,350 - 1,804,767 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LYZL6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1217,839,555 - 17,847,014 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11217,842,766 - 17,847,017 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21217,917,551 - 17,924,963 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LYZL6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11629,422,736 - 29,432,651 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1629,423,005 - 29,427,525 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666075542,869 - 552,933 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lyzl6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247865,758,451 - 5,760,610 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247865,758,321 - 5,762,276 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000040906   ⟹   ENSPPAP00000018177
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1721,147,928 - 21,157,112 (+)Ensembl
RefSeq Acc Id: XM_003817969   ⟹   XP_003818017
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21928,534,182 - 28,543,367 (+)NCBI
NHGRI_mPanPan11730,413,179 - 30,422,364 (+)NCBI
Mhudiblu_PPA_v01720,852,333 - 20,861,505 (+)NCBI
PanPan1.11721,147,928 - 21,157,112 (+)NCBI
Sequence:
RefSeq Acc Id: XM_003817970   ⟹   XP_003818018
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21928,534,195 - 28,543,367 (+)NCBI
NHGRI_mPanPan11730,413,192 - 30,422,364 (+)NCBI
Mhudiblu_PPA_v01720,852,333 - 20,861,478 (+)NCBI
PanPan1.11721,147,931 - 21,157,112 (+)NCBI
Sequence:
RefSeq Acc Id: XM_055102045   ⟹   XP_054958020
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21928,534,195 - 28,543,364 (+)NCBI
NHGRI_mPanPan11730,413,192 - 30,422,364 (+)NCBI
Protein Sequences
Protein RefSeqs XP_003818017 (Get FASTA)   NCBI Sequence Viewer  
  XP_003818018 (Get FASTA)   NCBI Sequence Viewer  
  XP_054958020 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000018177
  ENSPPAP00000018177.1
RefSeq Acc Id: XP_003818017   ⟸   XM_003817969
- UniProtKB: A0A2R9ALD5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003818018   ⟸   XM_003817970
- UniProtKB: A0A2R9ALD5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSPPAP00000018177   ⟸   ENSPPAT00000040906
RefSeq Acc Id: XP_054958020   ⟸   XM_055102045
- UniProtKB: A0A2R9ALD5 (UniProtKB/TrEMBL)

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000032212 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000040906.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.530.10 UniProtKB/TrEMBL
InterPro Glyco_hydro_22 UniProtKB/TrEMBL
  Glyco_hydro_22_CS UniProtKB/TrEMBL
  Glyco_hydro_22_lys UniProtKB/TrEMBL
  Lysozyme-like_dom_sf UniProtKB/TrEMBL
KEGG Report pps:100995179 UniProtKB/TrEMBL
NCBI Gene LYZL6 ENTREZGENE
PANTHER PTHR11407 UniProtKB/TrEMBL
  PTHR11407:SF9 UniProtKB/TrEMBL
Pfam Lys UniProtKB/TrEMBL
PRINTS LYSOZYME UniProtKB/TrEMBL
  LYZLACT UniProtKB/TrEMBL
PROSITE GLYCOSYL_HYDROL_F22_1 UniProtKB/TrEMBL
  GLYCOSYL_HYDROL_F22_2 UniProtKB/TrEMBL
SMART LYZ1 UniProtKB/TrEMBL
Superfamily-SCOP SSF53955 UniProtKB/TrEMBL
UniProt A0A2R9ALD5 ENTREZGENE, UniProtKB/TrEMBL