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Gene: USH1C (USH1 protein network component harmonin) Pan paniscus

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Symbol:

USH1C

Name:

USH1 protein network component harmonin

RGD ID:

11710849

Description:

ENCODES a protein that exhibits spectrin binding (inferred); INVOLVED IN actin filament bundle assembly (ortholog); inner ear auditory receptor cell differentiation (ortholog); inner ear morphogenesis (ortholog); PARTICIPATES IN auditory mechanotransduction pathway; retinitis pigmentosa pathway; ASSOCIATED WITH autosomal recessive nonsyndromic deafness (ortholog); Autosomal Recessive Nonsyndromic Deafness 18 (ortholog); autosomal recessive nonsyndromic deafness 18A (ortholog); FOUND IN photoreceptor inner segment (ortholog); photoreceptor outer segment (ortholog); stereocilium (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

harmonin; Usher syndrome 1C (autosomal recessive, severe)

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	19,827,448 - 19,877,874 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	19,787,920 - 19,838,443 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	17,548,501 - 17,598,923 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	17,233,854 - 17,284,256 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	17,233,854 - 17,284,256 (-)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal recessive nonsyndromic deafness (ISO)

Autosomal Recessive Nonsyndromic Deafness 18 (ISO)

autosomal recessive nonsyndromic deafness 18A (ISO)

fundus dystrophy (ISO)

genetic disease (ISO)

Hearing Loss (ISO)

intellectual disability (ISO)

Meniere's disease (ISO)

optic atrophy (ISO)

progressive myoclonus epilepsy 7 (ISO)

retinitis pigmentosa (ISO)

retinitis pigmentosa-deafness syndrome (ISO)

sensorineural hearing loss (ISO)

Usher syndrome (ISO)

Usher syndrome type 1 (ISO)

Usher Syndrome Type 1B (ISO)

Usher syndrome type 1C (ISO)

Usher syndrome type 2 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

actin filament bundle assembly (ISO)

auditory receptor cell morphogenesis (IEA)

brush border assembly (IEA)

equilibrioception (IEA)

G2/M transition of mitotic cell cycle (IEA)

inner ear auditory receptor cell differentiation (ISO)

inner ear morphogenesis (ISO)

inner ear receptor cell stereocilium organization (IEA,ISO)

neuromuscular process controlling balance (ISO)

parallel actin filament bundle assembly (ISO)

photoreceptor cell maintenance (IEA)

protein localization to microvillus (IEA)

protein-containing complex assembly (IEA)

regulation of microvillus length (ISO)

retinal cone cell development (IEA)

sensory perception of light stimulus (IEA)

sensory perception of sound (IEA,ISO)

Cellular Component

apical part of cell (IEA)

brush border (IEA)

cell projection (IEA)

cilium (IEA)

cytoplasm (IEA)

cytosol (IEA)

microvillus (IEA)

photoreceptor inner segment (IEA,ISO)

photoreceptor outer segment (ISO)

plasma membrane (IEA)

stereocilia ankle link complex (IEA)

stereocilium (ISO)

stereocilium tip (IEA)

synapse (ISO)

upper tip-link density (ISO)

Molecular Function

protein binding (ISO)

spectrin binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

auditory mechanotransduction pathway (ISO)

retinitis pigmentosa pathway (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

USH1C
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	19,827,448 - 19,877,874 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	19,787,920 - 19,838,443 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	17,548,501 - 17,598,923 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	17,233,854 - 17,284,256 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	17,233,854 - 17,284,256 (-)	Ensembl	panpan1.1		panPan2

USH1C
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	17,493,900 - 17,544,416 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	17,493,895 - 17,544,416 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	17,515,447 - 17,565,963 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	17,472,018 - 17,522,539 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	11	17,645,289 - 17,695,946 (-)	NCBI		Celera
Cytogenetic Map	11	p15.1	NCBI
HuRef	11	17,199,243 - 17,249,828 (-)	NCBI		HuRef
CHM1_1	11	17,515,265 - 17,565,784 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	11	17,591,495 - 17,642,149 (-)	NCBI		T2T-CHM13v2.0

Ush1c
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	45,844,774 - 45,887,984 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	45,844,774 - 45,887,927 (-)	Ensembl		GRCm39 Ensembl
GRCm38	7	46,195,350 - 46,238,490 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	46,195,350 - 46,238,503 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	53,450,721 - 53,493,860 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	46,063,399 - 46,106,532 (-)	NCBI		MGSCv36	mm8
Celera	7	41,668,925 - 41,712,073 (-)	NCBI		Celera
Cytogenetic Map	7	B3	NCBI
cM Map	7	29.66	NCBI

Ush1c
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	105,831,719 - 105,880,082 (-)	NCBI		GRCr8
mRatBN7.2	1	96,695,303 - 96,743,671 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	96,695,307 - 96,743,671 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	102,081,448 - 102,129,809 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	110,553,421 - 110,601,783 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	103,843,796 - 103,892,162 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	102,207,096 - 102,256,779 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	102,207,096 - 102,255,459 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	103,291,318 - 103,340,928 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	96,720,185 - 96,768,550 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	96,798,295 - 96,846,661 (-)	NCBI
Celera	1	90,943,948 - 90,992,307 (-)	NCBI		Celera
Cytogenetic Map	1	q22	NCBI

Ush1c
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955414	32,298,759 - 32,351,505 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955414	32,303,045 - 32,351,401 (-)	NCBI	ChiLan1.0	ChiLan1.0

USH1C
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	21	40,055,786 - 40,100,685 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	21	40,055,730 - 40,101,430 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	21	39,555,651 - 39,600,543 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	21	41,161,015 - 41,205,900 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	21	41,160,539 - 41,205,845 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	21	40,173,714 - 40,218,550 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	21	40,380,893 - 40,425,786 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	21	40,719,734 - 40,764,634 (-)	NCBI		UU_Cfam_GSD_1.0

Ush1c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	45,513,303 - 45,560,765 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936528	1,552,289 - 1,594,801 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936528	1,552,175 - 1,594,740 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

USH1C
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	41,593,802 - 41,647,247 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	41,593,793 - 41,646,777 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	44,613,841 - 44,706,204 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

USH1C
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	47,428,181 - 47,477,578 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	47,437,596 - 47,477,834 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	144,848,688 - 144,898,245 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ush1c
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624766	9,105,990 - 9,153,663 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624766	9,097,466 - 9,153,602 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_008971486	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034932235	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034932236	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034932237	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034932238	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034932239	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034932240	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034932241	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034932243	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063608102	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSPPAT00000033630 ⟹ ENSPPAP00000010975

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	11	17,233,854 - 17,284,256 (-)	Ensembl

Ensembl Acc Id:

ENSPPAT00000033634 ⟹ ENSPPAP00000010979

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	11	17,234,290 - 17,284,153 (-)	Ensembl

Ensembl Acc Id:

ENSPPAT00000033638 ⟹ ENSPPAP00000010983

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	11	17,234,322 - 17,284,153 (-)	Ensembl

Ensembl Acc Id:

ENSPPAT00000033645 ⟹ ENSPPAP00000010990

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	11	17,234,322 - 17,275,287 (-)	Ensembl

Ensembl Acc Id:

ENSPPAT00000033647 ⟹ ENSPPAP00000010992

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	11	17,234,322 - 17,275,287 (-)	Ensembl

RefSeq Acc Id:

XM_008971486 ⟹ XP_008969734

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	9	19,827,448 - 19,877,874 (-)	NCBI
NHGRI_mPanPan1	11	19,787,920 - 19,838,391 (-)	NCBI
Mhudiblu_PPA_v0	11	17,548,508 - 17,598,916 (-)	NCBI
PanPan1.1	11	17,233,854 - 17,284,256 (-)	NCBI

Sequence:

show sequence

GAGGGCGGCTGGCCCGGTCGCGTTCGCGGCTCTTTCCAGCTCCTGGCAGCCGGGCACCCGAAGG
AACGGGTCGTGCAACGACGCAGCTGGACCTGGCCCAGCCATGGACCGAAAAGTGGCCCGAGAAT
TCCGGCATAAGGTGGATTTTCTGATTGAAAATGATGCAGAGAAGGACTATCTCTATGATGTGCT
GCGAATGTACCACCAGACCATGGATGTGGCCGTGCTCGTGGGAGACCTGAAGCTGGTCATCAAT
GAACCCAGCCGTCTGCCTCTGTTTGATGCCATTCGGCCGCTGATCCCACTGAAGCACCAGGTGG
AATATGATCAGCTGACCCCCCGGCGCTCCAGGAAGCTGAAGGAGGTGCGTCTGGACCGTCTGCA
CCCCGAAGGCCTCGGCCTGAGTGTGCGTGGTGGCCTGGAGTTTGCCTGTGGGCTCTTCATCTCC
CACCTCATCAAAGGCGGTCAGGCAGACAGCGTCGGGCTCCAGGTAGGGGACGAGATCGTCCGGA
TCAATGGATATTCCATCTCCTCCTGTACCCATGAGGAGGTCATCAACCTCATTCGAACCAAGAA
AACTGTGTCCATCAAAGTGAGACACATCGGCCTGATCCCCGTGAAAAGCTCTCCTGATGAGCCC
CTCACTTGGCAGTATGTGGATCAGTTTGTGTCGGAATCTGGGGGTGTGCGAGGCAGCCTGGGCT
CCCCTGGAAATCGAGAAAACAAGGAGAAGAAGGTCTTCATCAGCCTGGTGGGCTCCCGGGGCCT
TGGCTGCAGCATTTCCAGCGGCCCCATCCAGAAGCCTGGCATCTTTATCAGCCACGTGAAACCT
GGCTCCCTGTCTGCTGAGGTGGGATTGGAGACAGGGGACCAGATTGTCGAAGTCAATGGCATCG
ACTTCTCTAACCTGGATCACAAGGAGGCTGTGAATGTGCTGAAGAGTAGCCGCAGCCTGACCAT
CTCCATTGTAGCTGGAGCTGGCCGGGAGCTGTTCATGACAGACCGGGAGCGGCTGGCAGAGGCG
CGGCAGCGTGAGCTGCAGCGGCAGGAGCTTCTCATGCAGAAGCGGCTGGCGATGGAGTCCAACA
AGATCCTCCAAGAGCAGCAGGAGATGGAGCGGCAAAGGAGAAAAGAAATTGCCCAGAAGGCAGC
AGAGGAAAATGAGAGATACCGGAAGGAGATGGAACAGATTGTAGAGGAGGAAGAGAAGTTTAAG
AAGCAATGGGAAGAAGACTGGGGCTCAAAGGAACAGCTACTCTTGCCTAAAACCATCACTGCTG
AGGTACACCCAGTACCCCTTCGCAAGCCAAAGTATGATCAGGGAGTGGAGCCTGAGCTCGAGCC
CGCAGATGACCTGGATGGAGGCACGGAGGAGCAGGGAGAGCAGGATTTCCGGAAATATGAGGAA
GGCTTTGACCCCTACTCCATGTTCACCCCAGAGCAGATCATGGGGAAGGATGTCCGGCTCCTAC
GCATTAAGAAGGAGGGATCCTTAGACCTGGCCCTGGAAGGCGGTGTGGACTCCCCCATTGGGAA
GGTGGTCGTTTCTGCTGTGTATGAGGGGGGAGCTGCTGAGCGGCATGGTGGCATTGTGAAAGGG
GACGAGATCATGGCAATCAACGGCAAGACTGTGACAGACTACACCCTGGCTGAGGCTGAGGCTG
CCCTGCAGAAGGCCTGGAATCAGGGCGGGGACTGGATCGACCTTGTGGTTGCCGTCTGCCCCCC
AAAGGAGTATGACGATGAGCTGACCTTCTTCTGAAGTCCAAAAGGGGAAACCAAATTCACCGTT
AGGAAACAGTGAGCTCCAGCCCCACCTCGTGAACACAAAGCCTCGGACCAGCCTTGAGAGAGGC
CACACTACACACACCACATGGCATCCTTGGGACCTGAATCTATCACCCAGGAATCTCAAACTCC
CTTTGGCCCTGAACCAGGGCCAGATAAGGAACAGCTCGGACCACTCTTCTGAAGGCCAACGTGG
AGGAAAGGGAGCAGCCAGCCGTTTGGGAGAAGATCTCAAGGATCCAGACTCTCATTCCTTTCCT
CTGGCCCAGTGAATTTGGTCTCTCCCAGCTCTGGGGGACTCCTTCCTTGAACCCTAATAAGACC
CCACTGGAGTCTCTCTCTCTCCATCCCTCTCCTCTGCCCTCTGCTCTAATTGCTGCCAGGATTG
TCACTCCAAACCTTACTCTGAGCTCATTAATAAAATAAACAGATTTATTTTCCA

hide sequence

RefSeq Acc Id:

XM_034932235 ⟹ XP_034788126

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	9	19,827,453 - 19,877,874 (-)	NCBI
NHGRI_mPanPan1	11	19,787,925 - 19,838,443 (-)	NCBI
Mhudiblu_PPA_v0	11	17,548,501 - 17,598,923 (-)	NCBI

RefSeq Acc Id:

XM_034932236 ⟹ XP_034788127

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	9	19,827,453 - 19,877,874 (-)	NCBI
NHGRI_mPanPan1	11	19,787,925 - 19,838,442 (-)	NCBI
Mhudiblu_PPA_v0	11	17,548,501 - 17,598,923 (-)	NCBI

RefSeq Acc Id:

XM_034932237 ⟹ XP_034788128

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	9	19,827,453 - 19,877,874 (-)	NCBI
NHGRI_mPanPan1	11	19,787,925 - 19,838,438 (-)	NCBI
Mhudiblu_PPA_v0	11	17,548,501 - 17,598,923 (-)	NCBI

RefSeq Acc Id:

XM_034932238 ⟹ XP_034788129

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	9	19,827,453 - 19,877,874 (-)	NCBI
NHGRI_mPanPan1	11	19,787,925 - 19,838,436 (-)	NCBI
Mhudiblu_PPA_v0	11	17,548,501 - 17,598,923 (-)	NCBI

RefSeq Acc Id:

XM_034932241 ⟹ XP_034788132

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	9	19,827,453 - 19,877,874 (-)	NCBI
NHGRI_mPanPan1	11	19,787,925 - 19,838,413 (-)	NCBI
Mhudiblu_PPA_v0	11	17,548,501 - 17,598,923 (-)	NCBI

RefSeq Acc Id:

XM_063608102 ⟹ XP_063464172

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	9	19,827,738 - 19,877,874 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_008969734	(Get FASTA)	NCBI Sequence Viewer
	XP_034788126	(Get FASTA)	NCBI Sequence Viewer
	XP_034788127	(Get FASTA)	NCBI Sequence Viewer
	XP_034788128	(Get FASTA)	NCBI Sequence Viewer
	XP_034788129	(Get FASTA)	NCBI Sequence Viewer
	XP_034788132	(Get FASTA)	NCBI Sequence Viewer
	XP_063464172	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000010975.1
	ENSPPAP00000010979.1
	ENSPPAP00000010983.1
	ENSPPAP00000010990.1
	ENSPPAP00000010992.1

RefSeq Acc Id:	XP_008969734 ⟸ XM_008971486
- Peptide Label:	isoform X6
- UniProtKB:	A0A2R9A5E6 (UniProtKB/TrEMBL), A0A2R9A178 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDRKVAREFRHKVDFLIENDAEKDYLYDVLRMYHQTMDVAVLVGDLKLVINEPSRLPLFDAIRP LIPLKHQVEYDQLTPRRSRKLKEVRLDRLHPEGLGLSVRGGLEFACGLFISHLIKGGQADSVGL QVGDEIVRINGYSISSCTHEEVINLIRTKKTVSIKVRHIGLIPVKSSPDEPLTWQYVDQFVSES GGVRGSLGSPGNRENKEKKVFISLVGSRGLGCSISSGPIQKPGIFISHVKPGSLSAEVGLETGD QIVEVNGIDFSNLDHKEAVNVLKSSRSLTISIVAGAGRELFMTDRERLAEARQRELQRQELLMQ KRLAMESNKILQEQQEMERQRRKEIAQKAAEENERYRKEMEQIVEEEEKFKKQWEEDWGSKEQL LLPKTITAEVHPVPLRKPKYDQGVEPELEPADDLDGGTEEQGEQDFRKYEEGFDPYSMFTPEQI MGKDVRLLRIKKEGSLDLALEGGVDSPIGKVVVSAVYEGGAAERHGGIVKGDEIMAINGKTVTD YTLAEAEAALQKAWNQGGDWIDLVVAVCPPKEYDDELTFF hide sequence

RefSeq Acc Id:	XP_034788132 ⟸ XM_034932241
- Peptide Label:	isoform X5
- UniProtKB:	A0A2R9A178 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_034788129 ⟸ XM_034932238
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_034788128 ⟸ XM_034932237
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_034788127 ⟸ XM_034932236
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_034788126 ⟸ XM_034932235
- Peptide Label:	isoform X1

Ensembl Acc Id:

ENSPPAP00000010992 ⟸ ENSPPAT00000033647

Ensembl Acc Id:

ENSPPAP00000010990 ⟸ ENSPPAT00000033645

Ensembl Acc Id:

ENSPPAP00000010983 ⟸ ENSPPAT00000033638

Ensembl Acc Id:

ENSPPAP00000010979 ⟸ ENSPPAT00000033634

Ensembl Acc Id:

ENSPPAP00000010975 ⟸ ENSPPAT00000033630

RefSeq Acc Id:	XP_063464172 ⟸ XM_063608102
- Peptide Label:	isoform X7
- UniProtKB:	A0A2R9A2A1 (UniProtKB/TrEMBL)

Protein Domains

PDZ

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000028696	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000033630.1	UniProtKB/TrEMBL
	ENSPPAT00000033634.1	UniProtKB/TrEMBL
	ENSPPAT00000033638.1	UniProtKB/TrEMBL
	ENSPPAT00000033645.1	UniProtKB/TrEMBL
	ENSPPAT00000033647.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.1160.20	UniProtKB/TrEMBL
	2.30.42.10	UniProtKB/TrEMBL
InterPro	Harmonin	UniProtKB/TrEMBL
	PDZ	UniProtKB/TrEMBL
	PDZ_sf	UniProtKB/TrEMBL
	USH2_Complex_Protein	UniProtKB/TrEMBL
KEGG Report	pps:100981309	UniProtKB/TrEMBL
NCBI Gene	USH1C	ENTREZGENE
PANTHER	PDZ DOMAIN CONTAINING WHIRLIN AND HARMONIN-RELATED	UniProtKB/TrEMBL
	PTHR23116:SF36	UniProtKB/TrEMBL
Pfam	PDZ	UniProtKB/TrEMBL
	USH1C_N	UniProtKB/TrEMBL
PROSITE	PDZ	UniProtKB/TrEMBL
SMART	PDZ	UniProtKB/TrEMBL
Superfamily-SCOP	SSF50156	UniProtKB/TrEMBL
UniProt	A0A2R9A161_PANPA	UniProtKB/TrEMBL
	A0A2R9A178	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R9A2A1	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R9A5E6	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R9A5J4_PANPA	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

RGD Manual Annotations