DMTN (dematin actin binding protein) - Rat Genome Database

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Gene: DMTN (dematin actin binding protein) Pan paniscus
Analyze
Symbol: DMTN
Name: dematin actin binding protein
RGD ID: 11708663
Description: ENCODES a protein that exhibits actin binding (inferred); actin filament binding (inferred); signaling receptor binding (inferred); INVOLVED IN negative regulation of peptidyl-serine phosphorylation (ortholog); negative regulation of peptidyl-threonine phosphorylation (ortholog); negative regulation of peptidyl-tyrosine phosphorylation (ortholog); ASSOCIATED WITH Conotruncal Cardiac Defects (ortholog); FOUND IN synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: dematin; EPB49; erythrocyte membrane protein band 4.9 (dematin)
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2740,550,804 - 40,584,490 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1816,275,936 - 16,309,702 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0821,293,759 - 21,327,600 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1818,238,541 - 18,267,291 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl818,251,886 - 18,266,229 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
DMTN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2740,550,804 - 40,584,490 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1816,275,936 - 16,309,702 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0821,293,759 - 21,327,600 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1818,238,541 - 18,267,291 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl818,251,886 - 18,266,229 (+)Ensemblpanpan1.1panPan2
DMTN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38822,048,931 - 22,082,525 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl822,048,995 - 22,082,527 (+)EnsemblGRCh38hg38GRCh38
GRCh37821,906,442 - 21,940,036 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36821,972,680 - 21,995,982 (+)NCBINCBI36Build 36hg18NCBI36
Build 34821,972,679 - 21,995,982NCBI
Celera820,873,144 - 20,902,318 (+)NCBICelera
Cytogenetic Map8p21.3NCBI
HuRef820,453,493 - 20,482,734 (+)NCBIHuRef
CHM1_1822,112,744 - 22,141,695 (+)NCBICHM1_1
T2T-CHM13v2.0822,322,887 - 22,356,487 (+)NCBIT2T-CHM13v2.0
Dmtn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391470,839,624 - 70,873,488 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1470,838,703 - 70,873,418 (-)EnsemblGRCm39 Ensembl
GRCm381470,602,184 - 70,636,048 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1470,601,263 - 70,636,048 (-)EnsemblGRCm38mm10GRCm38
MGSCv371471,003,477 - 71,029,961 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361469,338,750 - 69,365,234 (-)NCBIMGSCv36mm8
Celera1468,145,198 - 68,173,371 (-)NCBICelera
Cytogenetic Map14D2NCBI
cM Map1436.32NCBI
Dmtn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81552,087,667 - 52,111,956 (-)NCBIGRCr8
mRatBN7.21545,677,974 - 45,702,261 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1545,677,977 - 45,705,601 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1549,795,828 - 49,820,113 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01550,907,337 - 50,931,630 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01547,766,648 - 47,790,933 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01552,292,762 - 52,320,385 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1552,292,765 - 52,320,385 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01556,016,279 - 56,043,902 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41551,004,498 - 51,032,118 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11551,021,363 - 51,047,921 (-)NCBI
Celera1545,356,046 - 45,383,646 (-)NCBICelera
Cytogenetic Map15p11NCBI
Dmtn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540345,566,180 - 45,578,079 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540345,566,180 - 45,579,062 (+)NCBIChiLan1.0ChiLan1.0
DMTN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12535,163,867 - 35,188,761 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2535,165,876 - 35,176,754 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2535,752,999 - 35,778,392 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02535,374,965 - 35,400,383 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2535,375,297 - 35,400,794 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12535,320,204 - 35,345,608 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02535,177,036 - 35,200,175 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02535,332,536 - 35,355,698 (-)NCBIUU_Cfam_GSD_1.0
Dmtn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494312,659,342 - 12,685,809 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365555,896,471 - 5,910,098 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365555,884,746 - 5,911,171 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DMTN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl146,321,870 - 6,346,865 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1146,315,643 - 6,346,722 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2146,757,571 - 6,788,163 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DMTN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1820,120,054 - 20,154,368 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl820,125,703 - 20,152,985 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605222,082,446 - 22,116,979 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dmtn
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475817,655,803 - 17,671,666 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475817,640,938 - 17,672,709 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003823610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003823611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003823612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003823613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003823614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008977256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008977257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008977258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008977262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008977264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008977265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008977266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008977267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024929977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024929978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034965749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034965750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034965751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034965752 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034965753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034965754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034965755 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034965756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034965757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034965758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034965759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034965760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034965761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034965762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034965764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063607139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063607140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063607141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063607142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063607143 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063607144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063607145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063607146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063607147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063607148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063607149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063607150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063607151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSPPAT00000060409   ⟹   ENSPPAP00000037509
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl818,251,886 - 18,266,229 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000060423   ⟹   ENSPPAP00000037523
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl818,251,886 - 18,266,229 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000060427   ⟹   ENSPPAP00000037527
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl818,251,886 - 18,266,229 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000060429   ⟹   ENSPPAP00000037529
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl818,251,886 - 18,266,229 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000060433   ⟹   ENSPPAP00000037533
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl818,251,886 - 18,266,229 (+)Ensembl
RefSeq Acc Id: XM_063607139   ⟹   XP_063463209
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2740,558,885 - 40,582,558 (+)NCBI
RefSeq Acc Id: XM_063607140   ⟹   XP_063463210
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2740,561,088 - 40,582,558 (+)NCBI
RefSeq Acc Id: XM_063607141   ⟹   XP_063463211
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2740,550,804 - 40,582,558 (+)NCBI
RefSeq Acc Id: XM_063607142   ⟹   XP_063463212
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2740,556,745 - 40,582,558 (+)NCBI
RefSeq Acc Id: XM_063607143   ⟹   XP_063463213
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2740,559,831 - 40,582,558 (+)NCBI
RefSeq Acc Id: XM_063607144   ⟹   XP_063463214
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2740,558,885 - 40,582,558 (+)NCBI
RefSeq Acc Id: XM_063607145   ⟹   XP_063463215
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2740,561,087 - 40,582,558 (+)NCBI
RefSeq Acc Id: XM_063607146   ⟹   XP_063463216
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2740,550,835 - 40,582,558 (+)NCBI
RefSeq Acc Id: XM_063607147   ⟹   XP_063463217
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2740,556,747 - 40,582,558 (+)NCBI
RefSeq Acc Id: XM_063607148   ⟹   XP_063463218
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2740,558,885 - 40,582,558 (+)NCBI
RefSeq Acc Id: XM_063607149   ⟹   XP_063463219
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2740,561,090 - 40,582,558 (+)NCBI
RefSeq Acc Id: XM_063607150   ⟹   XP_063463220
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2740,550,843 - 40,582,558 (+)NCBI
RefSeq Acc Id: XM_063607151   ⟹   XP_063463221
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2740,556,738 - 40,584,490 (+)NCBI
Ensembl Acc Id: ENSPPAP00000037509   ⟸   ENSPPAT00000060409
Ensembl Acc Id: ENSPPAP00000037529   ⟸   ENSPPAT00000060429
Ensembl Acc Id: ENSPPAP00000037527   ⟸   ENSPPAT00000060427
Ensembl Acc Id: ENSPPAP00000037533   ⟸   ENSPPAT00000060433
Ensembl Acc Id: ENSPPAP00000037523   ⟸   ENSPPAT00000060423
RefSeq Acc Id: XP_063463211   ⟸   XM_063607141
- Peptide Label: isoform X1
- UniProtKB: A0A2R9CH54 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063463216   ⟸   XM_063607146
- Peptide Label: isoform X1
- UniProtKB: A0A2R9CH54 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063463220   ⟸   XM_063607150
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063463221   ⟸   XM_063607151
- Peptide Label: isoform X3
- UniProtKB: A0A2R9C6U0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063463212   ⟸   XM_063607142
- Peptide Label: isoform X1
- UniProtKB: A0A2R9CH54 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063463217   ⟸   XM_063607147
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063463209   ⟸   XM_063607139
- Peptide Label: isoform X1
- UniProtKB: A0A2R9CH54 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063463214   ⟸   XM_063607144
- Peptide Label: isoform X1
- UniProtKB: A0A2R9CH54 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063463218   ⟸   XM_063607148
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063463213   ⟸   XM_063607143
- Peptide Label: isoform X1
- UniProtKB: A0A2R9CH54 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063463215   ⟸   XM_063607145
- Peptide Label: isoform X1
- UniProtKB: A0A2R9CH54 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063463210   ⟸   XM_063607140
- Peptide Label: isoform X1
- UniProtKB: A0A2R9CH54 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063463219   ⟸   XM_063607149
- Peptide Label: isoform X2
Protein Domains
HP


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000041277 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000060409.1 UniProtKB/TrEMBL
  ENSPPAT00000060423.1 UniProtKB/TrEMBL
  ENSPPAT00000060427.1 UniProtKB/TrEMBL
  ENSPPAT00000060429.1 UniProtKB/TrEMBL
  ENSPPAT00000060433.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.950.10 UniProtKB/TrEMBL
InterPro AbLIM_anchor UniProtKB/TrEMBL
  Actin-binding_LIM UniProtKB/TrEMBL
  Villin_headpiece UniProtKB/TrEMBL
  Villin_headpiece_dom_sf UniProtKB/TrEMBL
NCBI Gene DMTN ENTREZGENE
PANTHER ACTIN-BINDING LIM PROTEIN UniProtKB/TrEMBL
  DEMATIN UniProtKB/TrEMBL
Pfam AbLIM_anchor UniProtKB/TrEMBL
  VHP UniProtKB/TrEMBL
PROSITE PS51089 UniProtKB/TrEMBL
SMART VHP UniProtKB/TrEMBL
Superfamily-SCOP SSF47050 UniProtKB/TrEMBL
UniProt A0A2R9C6U0 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9C6W2_PANPA UniProtKB/TrEMBL
  A0A2R9C9A3_PANPA UniProtKB/TrEMBL
  A0A2R9C9B3_PANPA UniProtKB/TrEMBL
  A0A2R9CH54 ENTREZGENE, UniProtKB/TrEMBL