ATP6V0A1 (ATPase H+ transporting V0 subunit a1) - Rat Genome Database

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Gene: ATP6V0A1 (ATPase H+ transporting V0 subunit a1) Pan paniscus
Analyze
Symbol: ATP6V0A1
Name: ATPase H+ transporting V0 subunit a1
RGD ID: 11706712
Description: ENCODES a protein that exhibits ATPase binding (inferred); proton-transporting ATPase activity, rotational mechanism (inferred); INVOLVED IN proton transmembrane transport (inferred); regulation of macroautophagy (inferred); synaptic vesicle lumen acidification (inferred); ASSOCIATED WITH autistic disorder (ortholog); developmental and epileptic encephalopathy 104 (ortholog); Developmental Disabilities (ortholog); FOUND IN synaptic vesicle membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: V-type proton ATPase 116 kDa subunit a; V-type proton ATPase 116 kDa subunit a 1; V-type proton ATPase 116 kDa subunit a isoform 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21922,461,782 - 22,525,772 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11724,351,790 - 24,415,800 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01714,793,717 - 14,857,706 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11715,017,692 - 15,082,491 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1715,017,695 - 15,082,470 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ATP6V0A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21922,461,782 - 22,525,772 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11724,351,790 - 24,415,800 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01714,793,717 - 14,857,706 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11715,017,692 - 15,082,491 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1715,017,695 - 15,082,470 (-)Ensemblpanpan1.1panPan2
ATP6V0A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381742,458,878 - 42,522,579 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1742,458,844 - 42,522,582 (+)EnsemblGRCh38hg38GRCh38
GRCh371740,610,896 - 40,674,597 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361737,864,388 - 37,928,123 (+)NCBINCBI36Build 36hg18NCBI36
Celera1737,266,849 - 37,330,552 (+)NCBICelera
Cytogenetic Map17q21.2NCBI
HuRef1736,375,995 - 36,439,547 (+)NCBIHuRef
CHM1_11740,846,745 - 40,910,459 (+)NCBICHM1_1
T2T-CHM13v2.01743,316,076 - 43,379,766 (+)NCBIT2T-CHM13v2.0
Atp6v0a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911100,899,262 - 100,954,545 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11100,900,278 - 100,954,545 (+)EnsemblGRCm39 Ensembl
GRCm3811101,009,422 - 101,063,719 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11101,009,452 - 101,063,719 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711100,870,769 - 100,925,028 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611100,825,545 - 100,879,804 (+)NCBIMGSCv36mm8
Celera11112,305,579 - 112,359,857 (+)NCBICelera
Cytogenetic Map11DNCBI
cM Map1164.04NCBI
Atp6v0a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81086,436,089 - 86,490,185 (+)NCBIGRCr8
mRatBN7.21085,935,802 - 85,989,901 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1085,935,854 - 85,989,895 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1090,972,230 - 91,026,335 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01090,450,858 - 90,505,156 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01085,844,028 - 85,898,326 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01088,914,264 - 88,967,736 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1088,914,276 - 88,967,748 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01088,710,520 - 88,766,232 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41089,948,286 - 90,072,304 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11089,964,972 - 90,086,670 (+)NCBI
Celera1084,654,189 - 84,707,639 (+)NCBICelera
Cytogenetic Map10q31NCBI
Atp6v0a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545116,396,287 - 16,444,932 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545116,396,287 - 16,442,596 (+)NCBIChiLan1.0ChiLan1.0
ATP6V0A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1920,422,144 - 20,486,459 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl920,423,373 - 20,484,328 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha919,883,979 - 19,948,472 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0921,141,094 - 21,205,623 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl921,141,096 - 21,205,565 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1919,926,898 - 19,991,407 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0920,192,140 - 20,256,660 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0920,296,209 - 20,360,734 (-)NCBIUU_Cfam_GSD_1.0
Atp6v0a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560219,778,545 - 19,839,467 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649017,235,661 - 17,296,633 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649017,235,661 - 17,296,589 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP6V0A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1220,288,411 - 20,344,127 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11220,288,409 - 20,344,142 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21220,501,313 - 20,557,073 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATP6V0A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11663,754,523 - 63,818,537 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1663,753,521 - 63,816,551 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607734,550,133 - 34,614,224 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atp6v0a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247951,560,995 - 1,608,067 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247951,561,104 - 1,607,693 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003813883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003813884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003813885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003813886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008966494 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008966495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034941820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034941821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034941822 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034941823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034941824 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034941826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034941827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034941828 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034941829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055102063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055102064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055102065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063599036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010110636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010110637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010110638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSPPAT00000045851   ⟹   ENSPPAP00000023033
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1715,017,695 - 15,082,470 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000045856   ⟹   ENSPPAP00000023038
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1715,017,695 - 15,082,470 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000045873   ⟹   ENSPPAP00000023054
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1715,019,168 - 15,080,425 (-)Ensembl
RefSeq Acc Id: XM_003813883   ⟹   XP_003813931
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21922,461,782 - 22,525,771 (-)NCBI
NHGRI_mPanPan11724,351,790 - 24,415,799 (-)NCBI
Mhudiblu_PPA_v01714,793,717 - 14,857,693 (-)NCBI
PanPan1.11715,017,695 - 15,082,470 (-)NCBI
Sequence:
RefSeq Acc Id: XM_003813884   ⟹   XP_003813932
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21922,461,782 - 22,525,772 (-)NCBI
NHGRI_mPanPan11724,351,790 - 24,415,799 (-)NCBI
Mhudiblu_PPA_v01714,793,717 - 14,857,706 (-)NCBI
PanPan1.11715,017,695 - 15,082,470 (-)NCBI
Sequence:
RefSeq Acc Id: XM_003813885   ⟹   XP_003813933
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21922,461,782 - 22,525,772 (-)NCBI
NHGRI_mPanPan11724,351,790 - 24,415,799 (-)NCBI
Mhudiblu_PPA_v01714,793,717 - 14,857,693 (-)NCBI
PanPan1.11715,017,692 - 15,082,491 (-)NCBI
Sequence:
RefSeq Acc Id: XM_003813886   ⟹   XP_003813934
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21922,461,782 - 22,525,772 (-)NCBI
NHGRI_mPanPan11724,351,790 - 24,415,800 (-)NCBI
Mhudiblu_PPA_v01714,793,717 - 14,857,693 (-)NCBI
PanPan1.11715,017,695 - 15,082,470 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008966494   ⟹   XP_008964742
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21922,461,782 - 22,525,772 (-)NCBI
NHGRI_mPanPan11724,351,790 - 24,415,800 (-)NCBI
Mhudiblu_PPA_v01714,793,717 - 14,857,693 (-)NCBI
PanPan1.11715,017,692 - 15,082,491 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008966495   ⟹   XP_008964743
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21922,461,782 - 22,525,772 (-)NCBI
NHGRI_mPanPan11724,351,790 - 24,415,800 (-)NCBI
Mhudiblu_PPA_v01714,793,717 - 14,857,693 (-)NCBI
PanPan1.11715,017,692 - 15,082,491 (-)NCBI
Sequence:
RefSeq Acc Id: XM_034941828   ⟹   XP_034797719
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21922,461,782 - 22,525,772 (-)NCBI
NHGRI_mPanPan11724,351,790 - 24,415,800 (-)NCBI
Mhudiblu_PPA_v01714,793,717 - 14,857,693 (-)NCBI
RefSeq Acc Id: XM_034941829   ⟹   XP_034797720
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21922,461,782 - 22,525,772 (-)NCBI
NHGRI_mPanPan11724,351,790 - 24,415,800 (-)NCBI
Mhudiblu_PPA_v01714,793,717 - 14,857,693 (-)NCBI
RefSeq Acc Id: XM_055102063   ⟹   XP_054958038
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21922,463,323 - 22,525,772 (-)NCBI
NHGRI_mPanPan11724,353,392 - 24,415,800 (-)NCBI
RefSeq Acc Id: XM_055102064   ⟹   XP_054958039
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21922,463,323 - 22,525,772 (-)NCBI
NHGRI_mPanPan11724,353,389 - 24,415,800 (-)NCBI
RefSeq Acc Id: XM_055102065   ⟹   XP_054958040
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21922,463,323 - 22,525,772 (-)NCBI
NHGRI_mPanPan11724,353,390 - 24,415,800 (-)NCBI
RefSeq Acc Id: XM_063599036   ⟹   XP_063455106
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21922,478,308 - 22,525,772 (-)NCBI
RefSeq Acc Id: XR_010110636
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21922,467,636 - 22,525,772 (-)NCBI
RefSeq Acc Id: XR_010110637
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21922,467,632 - 22,525,772 (-)NCBI
RefSeq Acc Id: XR_010110638
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21922,467,633 - 22,525,772 (-)NCBI
RefSeq Acc Id: XP_008964743   ⟸   XM_008966495
- Peptide Label: isoform X9
- UniProtKB: A0A2R9B1Y9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008964742   ⟸   XM_008966494
- Peptide Label: isoform X8
- UniProtKB: A0A2R9B1Y9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003813933   ⟸   XM_003813885
- Peptide Label: isoform X1
- UniProtKB: A0A2R9B1Y9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003813932   ⟸   XM_003813884
- Peptide Label: isoform X4
- UniProtKB: A0A2R9B1Y9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003813931   ⟸   XM_003813883
- Peptide Label: isoform X3
- UniProtKB: A0A2R9B4D7 (UniProtKB/TrEMBL),   A0A2R9B1Y9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003813934   ⟸   XM_003813886
- Peptide Label: isoform X2
- UniProtKB: A0A2R9B4D4 (UniProtKB/TrEMBL),   A0A2R9B1Y9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034797720   ⟸   XM_034941829
- Peptide Label: isoform X11
- UniProtKB: A0A2R9B1Y9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034797719   ⟸   XM_034941828
- Peptide Label: isoform X10
- UniProtKB: A0A2R9B1Y9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSPPAP00000023038   ⟸   ENSPPAT00000045856
Ensembl Acc Id: ENSPPAP00000023033   ⟸   ENSPPAT00000045851
Ensembl Acc Id: ENSPPAP00000023054   ⟸   ENSPPAT00000045873
RefSeq Acc Id: XP_054958039   ⟸   XM_055102064
- Peptide Label: isoform X6
- UniProtKB: A0A2R9B1Y9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054958040   ⟸   XM_055102065
- Peptide Label: isoform X7
- UniProtKB: A0A2R9B1Y9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054958038   ⟸   XM_055102063
- Peptide Label: isoform X5
- UniProtKB: A0A2R9B1Y9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063455106   ⟸   XM_063599036
- Peptide Label: isoform X12


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000034654 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000045851.1 UniProtKB/TrEMBL
  ENSPPAT00000045856.1 UniProtKB/TrEMBL
  ENSPPAT00000045873.1 UniProtKB/TrEMBL
InterPro V-ATPase_116kDa_su UniProtKB/TrEMBL
  V-type_ATPase_116kDa_su_euka UniProtKB/TrEMBL
KEGG Report pps:100990028 UniProtKB/TrEMBL
NCBI Gene ATP6V0A1 ENTREZGENE
PANTHER PTHR11629 UniProtKB/TrEMBL
  V-TYPE PROTON ATPASE 116 KDA SUBUNIT A1 UniProtKB/TrEMBL
Pfam V_ATPase_I UniProtKB/TrEMBL
PIRSF ATP6V0A1 UniProtKB/TrEMBL
UniProt A0A2R9B1Y9 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9B4D4 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9B4D7 ENTREZGENE, UniProtKB/TrEMBL