MHC-A (patr class I histocompatibility antigen, A-2 alpha chain-like) - Rat Genome Database

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Gene: MHC-A (patr class I histocompatibility antigen, A-2 alpha chain-like) Pan paniscus
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Symbol: MHC-A (Ensembl: Papa-A)
Name: patr class I histocompatibility antigen, A-2 alpha chain-like
RGD ID: 11704530
Description: ENCODES a protein that exhibits peptide antigen binding (inferred); signaling receptor binding (inferred); INVOLVED IN antigen processing and presentation (inferred); antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-independent (inferred); antigen processing and presentation of endogenous peptide antigen via MHC class Ib (inferred); FOUND IN cell surface (inferred); early endosome membrane (inferred); ER to Golgi transport vesicle membrane (inferred)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: MHC class I A; MHC class I alpha chain; MHC class I antigen; Papa-A
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2544,533,886 - 44,536,964 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1640,497,156 - 40,500,561 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0629,718,578 - 29,721,648 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1630,388,142 - 30,391,211 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl630,333,360 - 30,391,211 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:7759878   PMID:9435339   PMID:22301074   PMID:30032202  


Genomics


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001279231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KJ696706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KJ696707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KJ696708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KJ696709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KJ696710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY613063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY613064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY613065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY613066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY613067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY613068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY613069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY613070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY613071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY613072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY613073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY613074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY613075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY652679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY652680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY652681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY652682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY652683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY652684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY652685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY652686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY652687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY652688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY652689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY688126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY964060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY964061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L39093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L39094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U10534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U10535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U10536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: NM_001279231   ⟹   NP_001266160
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2544,533,886 - 44,536,964 (+)NCBI
NHGRI_mPanPan1640,497,239 - 40,500,308 (+)NCBI
Mhudiblu_PPA_v0629,718,578 - 29,721,648 (+)NCBI
PanPan1.1630,388,142 - 30,391,211 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001266160 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA61826 (Get FASTA)   NCBI Sequence Viewer  
  AAA61827 (Get FASTA)   NCBI Sequence Viewer  
  AAA88849 (Get FASTA)   NCBI Sequence Viewer  
  AAA88850 (Get FASTA)   NCBI Sequence Viewer  
  AAA88851 (Get FASTA)   NCBI Sequence Viewer  
  AHX83876 (Get FASTA)   NCBI Sequence Viewer  
  AHX83877 (Get FASTA)   NCBI Sequence Viewer  
  AHX83878 (Get FASTA)   NCBI Sequence Viewer  
  AHX83879 (Get FASTA)   NCBI Sequence Viewer  
  AHX83880 (Get FASTA)   NCBI Sequence Viewer  
  ASK05076 (Get FASTA)   NCBI Sequence Viewer  
  ASK05077 (Get FASTA)   NCBI Sequence Viewer  
  ASK05078 (Get FASTA)   NCBI Sequence Viewer  
  ASK05079 (Get FASTA)   NCBI Sequence Viewer  
  ASK05080 (Get FASTA)   NCBI Sequence Viewer  
  ASK05081 (Get FASTA)   NCBI Sequence Viewer  
  ASK05082 (Get FASTA)   NCBI Sequence Viewer  
  ASK05083 (Get FASTA)   NCBI Sequence Viewer  
  ASK05084 (Get FASTA)   NCBI Sequence Viewer  
  ASK05085 (Get FASTA)   NCBI Sequence Viewer  
  ASK05086 (Get FASTA)   NCBI Sequence Viewer  
  ASK05087 (Get FASTA)   NCBI Sequence Viewer  
  ASK05088 (Get FASTA)   NCBI Sequence Viewer  
  ASS83774 (Get FASTA)   NCBI Sequence Viewer  
  ASS83775 (Get FASTA)   NCBI Sequence Viewer  
  ASS83776 (Get FASTA)   NCBI Sequence Viewer  
  AST23032 (Get FASTA)   NCBI Sequence Viewer  
  AST23033 (Get FASTA)   NCBI Sequence Viewer  
  AST23034 (Get FASTA)   NCBI Sequence Viewer  
  AST23035 (Get FASTA)   NCBI Sequence Viewer  
  AST23036 (Get FASTA)   NCBI Sequence Viewer  
  AST23037 (Get FASTA)   NCBI Sequence Viewer  
  AST23038 (Get FASTA)   NCBI Sequence Viewer  
  AST23039 (Get FASTA)   NCBI Sequence Viewer  
  AST23040 (Get FASTA)   NCBI Sequence Viewer  
  AST23041 (Get FASTA)   NCBI Sequence Viewer  
  AST23042 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000020486.1
  ENSPPAP00000020495.1
  ENSPPAP00000020514.1
  ENSPPAP00000020614.1
  ENSPPAP00000020616.1
  ENSPPAP00000020621.1
  ENSPPAP00000020626.1
RefSeq Acc Id: NP_001266160   ⟸   NM_001279231
- Peptide Label: precursor
- UniProtKB: Q30900 (UniProtKB/TrEMBL),   A0A220QJY3 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
Ig-like   Immunoglobulin C1-set


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000033438 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000043280.1 UniProtKB/TrEMBL
  ENSPPAT00000043289.1 UniProtKB/TrEMBL
  ENSPPAT00000043308.1 UniProtKB/TrEMBL
  ENSPPAT00000043409.1 UniProtKB/TrEMBL
  ENSPPAT00000043411.1 UniProtKB/TrEMBL
  ENSPPAT00000043416.1 UniProtKB/TrEMBL
  ENSPPAT00000043421.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
  3.30.500.10 UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig/MHC_CS UniProtKB/TrEMBL
  Ig_C1-set UniProtKB/TrEMBL
  MHC_class-I_related UniProtKB/TrEMBL
  MHC_I-like_Ag-recog UniProtKB/TrEMBL
  MHC_I-like_Ag-recog_sf UniProtKB/TrEMBL
  MHC_I/II-like_Ag-recog UniProtKB/TrEMBL
  MHC_I_a_a1/a2 UniProtKB/TrEMBL
  MHC_I_a_C UniProtKB/TrEMBL
KEGG Report pps:100978112 UniProtKB/TrEMBL
NCBI Gene Papa-A ENTREZGENE
PANTHER HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, A ALPHA CHAIN UniProtKB/TrEMBL
  HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, ALPHA CHAIN H-RELATED UniProtKB/TrEMBL
  MHC CLASS I-RELATED UniProtKB/TrEMBL
Pfam C1-set UniProtKB/TrEMBL
  MHC_I UniProtKB/TrEMBL
  MHC_I_C UniProtKB/TrEMBL
PRINTS MHCCLASSI UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
  IG_MHC UniProtKB/TrEMBL
SMART IGc1 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
  SSF54452 UniProtKB/TrEMBL
UniProt A0A220QJY3 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9AT37_PANPA UniProtKB/TrEMBL
  A0A2R9ATG8_PANPA UniProtKB/TrEMBL
  A0A2R9ATH0_PANPA UniProtKB/TrEMBL
  A0A2R9ATH6_PANPA UniProtKB/TrEMBL
  A0A2R9AXE6_PANPA UniProtKB/TrEMBL
  A0A2R9AZJ5_PANPA UniProtKB/TrEMBL
  A0A2R9AZT0_PANPA UniProtKB/TrEMBL
  Q30900 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-08-06 MHC-A  patr class I histocompatibility antigen, A-2 alpha chain-like  Papa-A  patr class I histocompatibility antigen, A-2 alpha chain-like  Symbol and/or name change 5135510 APPROVED