ATP6V1C2 (ATPase H+ transporting V1 subunit C2) - Rat Genome Database

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Gene: ATP6V1C2 (ATPase H+ transporting V1 subunit C2) Pan paniscus
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Symbol: ATP6V1C2
Name: ATPase H+ transporting V1 subunit C2
RGD ID: 11702080
Description: ENCODES a protein that exhibits identical protein binding (inferred); proton-transporting ATPase activity, rotational mechanism (inferred); INVOLVED IN positive regulation of Wnt signaling pathway (inferred); proton transmembrane transport (inferred); ASSOCIATED WITH Distal Renal Tubular Acidosis (ortholog); megacolon (ortholog); renal tubular acidosis (ortholog); FOUND IN lysosomal membrane (inferred); proton-transporting V-type ATPase, V1 domain (inferred); vacuolar proton-transporting V-type ATPase, V1 domain (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: V-type proton ATPase subunit C 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v212115,734,027 - 115,825,994 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A115,737,998 - 115,829,120 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A10,689,538 - 10,783,372 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A10,874,395 - 10,936,457 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A10,872,071 - 10,936,457 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ATP6V1C2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v212115,734,027 - 115,825,994 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A115,737,998 - 115,829,120 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A10,689,538 - 10,783,372 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A10,874,395 - 10,936,457 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A10,872,071 - 10,936,457 (+)Ensemblpanpan1.1panPan2
ATP6V1C2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38210,720,943 - 10,785,110 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl210,721,100 - 10,785,110 (+)EnsemblGRCh38hg38GRCh38
GRCh37210,861,756 - 10,925,236 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36210,779,226 - 10,842,687 (+)NCBINCBI36Build 36hg18NCBI36
Build 34210,812,420 - 10,875,832NCBI
Celera210,777,001 - 10,840,382 (+)NCBICelera
Cytogenetic Map2p25.1NCBI
HuRef210,713,330 - 10,776,550 (+)NCBIHuRef
CHM1_1210,791,519 - 10,854,975 (+)NCBICHM1_1
T2T-CHM13v2.0210,750,978 - 10,815,109 (+)NCBIT2T-CHM13v2.0
Atp6v1c2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391217,334,722 - 17,375,700 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1217,334,722 - 17,379,360 (-)EnsemblGRCm39 Ensembl
GRCm381217,284,721 - 17,325,386 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1217,284,721 - 17,329,359 (-)EnsemblGRCm38mm10GRCm38
MGSCv371217,291,527 - 17,331,536 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361217,310,201 - 17,350,192 (-)NCBIMGSCv36mm8
Celera1217,606,632 - 17,646,929 (-)NCBICelera
Cytogenetic Map12A1.1NCBI
cM Map128.06NCBI
Atp6v1c2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8645,809,269 - 45,872,914 (-)NCBIGRCr8
mRatBN7.2640,080,545 - 40,144,199 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl640,080,547 - 40,120,028 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx640,407,983 - 40,447,436 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0640,722,678 - 40,762,133 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0640,155,927 - 40,195,380 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0642,585,452 - 42,632,289 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl642,585,934 - 42,630,983 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0652,307,211 - 52,351,972 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera639,381,677 - 39,420,442 (-)NCBICelera
Cytogenetic Map6q16NCBI
Atp6v1c2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554875,711,235 - 5,735,081 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554875,711,235 - 5,735,081 (+)NCBIChiLan1.0ChiLan1.0
ATP6V1C2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1177,602,348 - 7,653,402 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl177,599,535 - 7,653,402 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha177,526,180 - 7,578,668 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0177,702,415 - 7,755,089 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl177,702,390 - 7,755,089 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1177,589,007 - 7,641,343 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0177,591,391 - 7,643,850 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0177,604,848 - 7,657,564 (+)NCBIUU_Cfam_GSD_1.0
Atp6v1c2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629252,063,348 - 52,116,116 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365326,818,758 - 6,865,959 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365326,818,387 - 6,866,691 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP6V1C2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3125,775,099 - 125,825,244 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13125,774,259 - 125,825,752 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23134,530,646 - 134,581,910 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ATP6V1C2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11496,827,671 - 96,894,854 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1496,828,451 - 96,893,116 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604515,398,860 - 15,464,184 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atp6v1c2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248654,711,119 - 4,734,740 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248654,711,324 - 4,734,409 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000034021   ⟹   ENSPPAP00000011366
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2A10,872,071 - 10,934,639 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000034028   ⟹   ENSPPAP00000011372
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2A10,874,395 - 10,936,457 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000034032   ⟹   ENSPPAP00000011376
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2A10,874,395 - 10,936,457 (+)Ensembl
RefSeq Acc Id: XM_034952610   ⟹   XP_034808501
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v212115,734,027 - 115,825,994 (-)NCBI
NHGRI_mPanPan12A115,737,998 - 115,829,120 (-)NCBI
Mhudiblu_PPA_v02A10,689,538 - 10,781,733 (+)NCBI
RefSeq Acc Id: XM_057301341   ⟹   XP_057157324
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v212115,734,027 - 115,795,812 (-)NCBI
NHGRI_mPanPan12A115,737,998 - 115,800,053 (-)NCBI
RefSeq Acc Id: XM_057301342   ⟹   XP_057157325
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v212115,734,027 - 115,795,812 (-)NCBI
NHGRI_mPanPan12A115,737,998 - 115,800,053 (-)NCBI
RefSeq Acc Id: XM_057301343   ⟹   XP_057157326
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v212115,734,027 - 115,795,812 (-)NCBI
NHGRI_mPanPan12A115,737,998 - 115,800,053 (-)NCBI
Protein Sequences
Protein RefSeqs XP_034808501 (Get FASTA)   NCBI Sequence Viewer  
  XP_057157324 (Get FASTA)   NCBI Sequence Viewer  
  XP_057157325 (Get FASTA)   NCBI Sequence Viewer  
  XP_057157326 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000011366.1
  ENSPPAP00000011372.1
  ENSPPAP00000011376.1
RefSeq Acc Id: XP_034808501   ⟸   XM_034952610
- Peptide Label: isoform X3
Ensembl Acc Id: ENSPPAP00000011376   ⟸   ENSPPAT00000034032
Ensembl Acc Id: ENSPPAP00000011372   ⟸   ENSPPAT00000034028
Ensembl Acc Id: ENSPPAP00000011366   ⟸   ENSPPAT00000034021
RefSeq Acc Id: XP_057157326   ⟸   XM_057301343
- Peptide Label: isoform X4
- UniProtKB: A0A2R9A7J3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_057157325   ⟸   XM_057301342
- Peptide Label: isoform X2
- UniProtKB: A0A2R9A266 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_057157324   ⟸   XM_057301341
- Peptide Label: isoform X1
- UniProtKB: A0A2R9A7I1 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000028894 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000034021.1 UniProtKB/TrEMBL
  ENSPPAT00000034028.1 UniProtKB/TrEMBL
  ENSPPAT00000034032.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.100 UniProtKB/TrEMBL
  subunit c (vma5p) of the yeast v-atpase, domain 2 UniProtKB/TrEMBL
InterPro ATPase_V1-cplx_csu UniProtKB/TrEMBL
  Vac_ATP_synth_c_sf UniProtKB/TrEMBL
NCBI Gene ATP6V1C2 ENTREZGENE
PANTHER PTHR10137 UniProtKB/TrEMBL
  V-TYPE PROTON ATPASE SUBUNIT C 2 UniProtKB/TrEMBL
Pfam V-ATPase_C UniProtKB/TrEMBL
Superfamily-SCOP SSF118203 UniProtKB/TrEMBL
UniProt A0A2R9A266 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9A7I1 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9A7J3 ENTREZGENE, UniProtKB/TrEMBL