LOC100988948 (disintegrin and metalloproteinase domain-containing protein 20-like) - Rat Genome Database

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Gene: LOC100988948 (disintegrin and metalloproteinase domain-containing protein 20-like) Pan paniscus
Analyze
Symbol: LOC100988948
Name: disintegrin and metalloproteinase domain-containing protein 20-like
RGD ID: 11683655
Description: ENCODES a protein that exhibits metal ion binding (inferred); metalloendopeptidase activity (inferred); INVOLVED IN male gonad development (inferred); proteolysis (inferred); FOUND IN external side of plasma membrane (inferred); membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21571,590,473 - 71,593,680 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11470,806,361 - 70,810,174 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01451,059,727 - 51,063,204 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11469,929,989 - 69,933,817 (-)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_034937735 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_034937735   ⟹   XP_034793626
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21571,590,473 - 71,593,680 (-)NCBI
NHGRI_mPanPan11470,806,361 - 70,810,174 (-)NCBI
Mhudiblu_PPA_v01451,059,727 - 51,063,204 (-)NCBI
Protein Sequences
Protein RefSeqs XP_034793626 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000042745.1
RefSeq Acc Id: XP_034793626   ⟸   XM_034937735
- UniProtKB: A0A2R9CL78 (UniProtKB/TrEMBL)
Protein Domains
EGF-like   Peptidase M12B


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000043925 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000065676.1 UniProtKB/TrEMBL
Gene3D-CATH Collagenase (Catalytic Domain) UniProtKB/TrEMBL
InterPro ADAM_Cys-rich UniProtKB/TrEMBL
  EGF-like_dom UniProtKB/TrEMBL
  MetalloPept_cat_dom_sf UniProtKB/TrEMBL
  Peptidase_M12B UniProtKB/TrEMBL
  Peptidase_M12B_N UniProtKB/TrEMBL
  Reprolysin_adamalysin UniProtKB/TrEMBL
NCBI Gene LOC100988948 ENTREZGENE
PANTHER A DISINTEGRIN AND METALLOPEPTIDASE DOMAIN 4-RELATED UniProtKB/TrEMBL
  ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN UniProtKB/TrEMBL
Pfam ADAM_CR UniProtKB/TrEMBL
  Pep_M12B_propep UniProtKB/TrEMBL
  Reprolysin UniProtKB/TrEMBL
PROSITE ADAM_MEPRO UniProtKB/TrEMBL
  EGF_3 UniProtKB/TrEMBL
SMART ACR UniProtKB/TrEMBL
Superfamily-SCOP Metalloproteases ('zincins'), catalytic domain UniProtKB/TrEMBL
UniProt A0A2R9CL78 ENTREZGENE, UniProtKB/TrEMBL