CLEC6A (C-type lectin domain containing 6A) - Rat Genome Database

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Gene: CLEC6A (C-type lectin domain containing 6A) Pan paniscus
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Symbol: CLEC6A
Name: C-type lectin domain containing 6A
RGD ID: 11673050
Description: ENCODES a protein that exhibits calcium ion binding (inferred); carbohydrate binding (inferred); D-mannose binding (inferred); INVOLVED IN antifungal innate immune response (inferred); defense response to fungus (inferred); detection of yeast (inferred); ASSOCIATED WITH developmental and epileptic encephalopathy 21 (ortholog); Hyperphosphatemic Familial Tumoral Calcinosis 1 (ortholog); immunodeficiency with hyper-IgM type 2 (ortholog); FOUND IN plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: C-type lectin domain family 6 member A
RGD Orthologs
Human
Mouse
Rat
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21013,979,106 - 14,002,512 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11213,975,866 - 13,999,272 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0128,537,766 - 8,560,736 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1128,752,778 - 8,775,738 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl128,752,778 - 8,775,738 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CLEC6A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21013,979,106 - 14,002,512 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11213,975,866 - 13,999,272 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0128,537,766 - 8,560,736 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1128,752,778 - 8,775,738 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl128,752,778 - 8,775,738 (+)Ensemblpanpan1.1panPan2
CLEC6A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38128,455,962 - 8,478,330 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl128,455,962 - 8,478,330 (+)EnsemblGRCh38hg38GRCh38
GRCh37128,608,558 - 8,630,926 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36128,499,858 - 8,522,193 (+)NCBINCBI36Build 36hg18NCBI36
Build 34128,499,857 - 8,522,193NCBI
Celera1210,144,899 - 10,166,924 (+)NCBICelera
Cytogenetic Map12p13.31NCBI
HuRef128,391,249 - 8,413,275 (+)NCBIHuRef
CHM1_1128,577,549 - 8,599,900 (+)NCBICHM1_1
T2T-CHM13v2.0128,439,728 - 8,461,787 (+)NCBIT2T-CHM13v2.0
Clec4n
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396123,206,802 - 123,223,983 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6123,206,802 - 123,223,980 (+)EnsemblGRCm39 Ensembl
GRCm386123,229,843 - 123,247,024 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6123,229,843 - 123,247,021 (+)EnsemblGRCm38mm10GRCm38
MGSCv376123,179,861 - 123,197,042 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366123,195,493 - 123,212,640 (+)NCBIMGSCv36mm8
Celera6125,027,700 - 125,044,646 (+)NCBICelera
Cytogenetic Map6F2NCBI
cM Map658.3NCBI
Clec4a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84158,026,138 - 158,119,904 (+)NCBIGRCr8
mRatBN7.24156,340,439 - 156,434,212 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4156,414,688 - 156,432,402 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4162,678,777 - 162,695,191 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04158,461,653 - 158,478,065 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04157,107,078 - 157,123,494 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04156,049,800 - 156,069,260 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4156,050,054 - 156,069,313 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04223,068,344 - 223,087,733 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44159,692,487 - 159,709,965 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14159,937,404 - 159,954,884 (+)NCBI
Celera4145,221,913 - 145,239,583 (+)NCBICelera
Cytogenetic Map4q42NCBI
CLEC6A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1118,227,590 - 8,250,857 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl118,228,381 - 8,253,159 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666089325,571 - 349,303 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000033097   ⟹   ENSPPAP00000010447
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl128,752,778 - 8,775,738 (+)Ensembl
RefSeq Acc Id: XM_055095354   ⟹   XP_054951329
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21013,979,106 - 14,002,512 (+)NCBI
NHGRI_mPanPan11213,975,866 - 13,999,272 (+)NCBI
Protein Sequences
Protein RefSeqs XP_054951329 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000010447.1
Ensembl Acc Id: ENSPPAP00000010447   ⟸   ENSPPAT00000033097
RefSeq Acc Id: XP_054951329   ⟸   XM_055095354
- UniProtKB: A0A2R8ZZN7 (UniProtKB/TrEMBL)
Protein Domains
C-type lectin


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000028446 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000033097.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.100.10 UniProtKB/TrEMBL
InterPro C-type_lectin-like UniProtKB/TrEMBL
  C-type_lectin-like/link_sf UniProtKB/TrEMBL
  C-type_lectin/snaclec_domain UniProtKB/TrEMBL
  CD209-like_CTLD UniProtKB/TrEMBL
  CTDL_fold UniProtKB/TrEMBL
NCBI Gene CLEC6A ENTREZGENE
PANTHER MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED UniProtKB/TrEMBL
Pfam Lectin_C UniProtKB/TrEMBL
PROSITE C_TYPE_LECTIN_2 UniProtKB/TrEMBL
SMART CLECT UniProtKB/TrEMBL
Superfamily-SCOP SSF56436 UniProtKB/TrEMBL
UniProt A0A2R8ZZN7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-03-28 CLEC6A  C-type lectin domain containing 6A    C-type lectin domain family 6 member A  Symbol and/or name change 5135510 APPROVED