Rpl21l6 (ribosomal protein L21 like 6) - Rat Genome Database

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Gene: Rpl21l6 (ribosomal protein L21 like 6) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Rpl21l6 (Ensembl: LOC108349932)
Name: ribosomal protein L21 like 6 (Ensembl:60S ribosomal protein L21 pseudogene)
RGD ID: 11494182
Description: Predicted to be involved in translation. Predicted to be located in endoplasmic reticulum.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 60S ribosomal protein L21 pseudogene; 60S ribosomal protein L21-like; large ribosomal subunit protein eL21-like; LOC108349932
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8234,263,326 - 34,263,861 (+)NCBIGRCr8
mRatBN7.2232,529,306 - 32,531,079 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl232,529,306 - 32,529,788 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0231,378,743 - 31,379,318 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Celera228,528,181 - 28,528,750 (+)NCBICelera
Cytogenetic Map2q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
translation  (IEA)

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics

Variants

.
Variants in Rpl21l6
46 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631682Bp115Blood pressure QTL 1154.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2137410502Rat
738010Lnnr3Liver neoplastic nodule remodeling QTL 32.94liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)2141244106Rat
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)25873687102844969Rat
1600379Mcs18Mammary carcinoma susceptibility QTL 182.6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2788777242804738Rat
738012Anxrr3Anxiety related response QTL 33.8exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)2902351954023519Rat
10755430Coatc6Coat color QTL 60.02576coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)21159110056591100Rat
1578664Bmd9Bone mineral QTL density 95femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)21185206249003364Rat
731184Mamtr4Mammary tumor resistance QTL 40.0003mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)21649174061491740Rat
1357990Ael1Aortic elastin QTL 13.10.00091aorta elastin amount (VT:0003905)aortic elastin21907682564076825Rat
731167Glom4Glomerulus QTL 42.40.0082kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)22030467265304672Rat
2300168Bmd47Bone mineral density QTL 476.60.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)22066244865662448Rat
10402051Gdil2Gastrointestinal dilation QTL 2enteric ganglion morphology trait (VT:0001045)length of intestine affected by colonic aganglionosis to total length of colon ratio (CMO:0001836)22490385374786777Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)225413423143657569Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)22691781781754745Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)22691781781754745Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)22691781781754745Rat
1354603Bp243Blood pressure QTL 2433.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)226917817127469484Rat
2290453Scl55Serum cholesterol level QTL 552.83blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)226917817136917119Rat
1331764Bp205Blood pressure QTL 2053.476arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)22699957143154682Rat
1643006Pain1Pain QTL 13.630.005mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)22699957148268661Rat
9590095Sffal3Serum free fatty acids level QTL 36.780.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)22715716072157160Rat
1300160Hrtrt3Heart rate QTL 33.62heart pumping trait (VT:2000009)absolute change in heart rate (CMO:0000534)22997159351729300Rat
10755434Coatc7Coat color QTL 70.04794coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23064806575648065Rat
731179Mamtr3Mammary tumor resistance QTL 30.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)23237377043665178Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_063282834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000050384   ⟹   ENSRNOP00000042560
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl232,529,306 - 32,529,788 (+)Ensembl
RefSeq Acc Id: XM_063282834   ⟹   XP_063138904
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8234,263,326 - 34,263,861 (+)NCBI
Protein Sequences
Protein RefSeqs XP_063138904 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000042560.4
RefSeq Acc Id: ENSRNOP00000042560   ⟸   ENSRNOT00000050384
RefSeq Acc Id: XP_063138904   ⟸   XM_063282834

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A4G9-F1-model_v2 AlphaFold D4A4G9 1-160 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-54641 BioCyc
Ensembl Genes ENSRNOG00000068124 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000050384.5 UniProtKB/TrEMBL
Gene3D-CATH 2.30.30.70 UniProtKB/TrEMBL
  6.10.250.3260 UniProtKB/TrEMBL
InterPro Ribosomal_L21_sf UniProtKB/TrEMBL
  Ribosomal_L21e UniProtKB/TrEMBL
  Ribosomal_L21e_CS UniProtKB/TrEMBL
  Translation_prot_SH3-like_sf UniProtKB/TrEMBL
NCBI Gene LOC108349932 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L21 UniProtKB/TrEMBL
  PTHR20981 UniProtKB/TrEMBL
Pfam Ribosomal_L21e UniProtKB/TrEMBL
PhenoGen Rpl21l6 PhenoGen
PROSITE RIBOSOMAL_L21E UniProtKB/TrEMBL
RatGTEx ENSRNOG00000068124 RatGTEx
Superfamily-SCOP SSF50104 UniProtKB/TrEMBL
UniProt D4A4G9_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-10-13 Rpl21l6  ribosomal protein L21 like 6  Rpl21l1  ribosomal protein L21 like 1  Name and Symbol changed 629549 APPROVED
2023-09-19 Rpl21l1  ribosomal protein L21 like 1  LOC108349932  60S ribosomal protein L21 pseudogene  Symbol and Name Changed 1299863 APPROVED
2016-08-02 LOC108349932  60S ribosomal protein L21 pseudogene      Symbol and Name status set to provisional 70820 PROVISIONAL