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Gene: LOC108350428 (uncharacterized LOC108350428) Rattus norvegicus

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Symbol:

LOC108350428

Name:

uncharacterized LOC108350428

RGD ID:

11484255

Description:

Type:

ncrna (Ensembl: lncRNA)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8 Ensembl	3	112,940,692 - 113,000,838 (+)	Ensembl				GRCr8
mRatBN7.2	3	92,486,019 - 92,546,067 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	92,485,996 - 92,546,105 (+)	Ensembl				mRatBN7.2
Rnor_6.0	3	96,065,830 - 96,132,988 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Celera	3	91,534,859 - 91,595,282 (+)	NCBI		Celera
Cytogenetic Map	3	q33	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

References

Genomics

Variants

Variants in LOC108350428
267 total Variants

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2301414	Kidm37	Kidney mass QTL 37		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	70653097	121056321	Rat
1582238	Bw68	Body weight QTL 68	3.2	0.0064	body mass (VT:0001259)	body weight (CMO:0000012)	3	53184593	115665732	Rat
1582239	Epfw1	Epididymal fat weight QTL 1	4.5	0.0006	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	3	53184593	115665732	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	31172320	163586636	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	47233211	147415807	Rat
1358362	Srcrt2	Stress Responsive Cort QTL 2	2.78		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	38192233	133483320	Rat
737818	Hcar12	Hepatocarcinoma resistance QTL 12	2.6		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	3	29463235	118376539	Rat
1582218	Bw74	Body weight QTL 74	3.9	0.0021	body mass (VT:0001259)	body weight (CMO:0000012)	3	53184593	115665732	Rat
1582221	Kidm30	Kidney mass QTL 30	3.5	0.0008	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	3	64655305	115665732	Rat
1581568	Rf53	Renal function QTL 53			urine total protein amount (VT:0000032)	urine protein excretion rate to body weight ratio (CMO:0001099)	3	56395968	161299569	Rat
1582210	Bw71	Body weight QTL 71	3.3	0.0012	body mass (VT:0001259)	body weight (CMO:0000012)	3	64655305	115665732	Rat
7387306	Bw124	Body weight QTL 124	3.2	0.0003	body mass (VT:0001259)	body weight (CMO:0000012)	3	84091273	129091273	Rat
1300111	Rf12	Renal function QTL 12	3.78		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	3	61017749	121056321	Rat
724523	Tsu1	Thymus enlargement suppressive QTL 1	3.84		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	3	50437504	115638231	Rat
1600376	Arunc5	Aerobic running capacity QTL 5		0.21	exercise endurance trait (VT:0002332)	longest distance run on treadmill (CMO:0001406)	3	73376539	118376539	Rat
8694437	Bw167	Body weight QTL 167	22.46	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	3	91797474	136797474	Rat
2302273	Gluco35	Glucose level QTL 35	5.3	0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	80800231	114297550	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	59242096	157323038	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	43827364	169034231	Rat
1581503	Cm58	Cardiac mass QTL 58	2.7	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	43827364	121056321	Rat
2292613	Ept16	Estrogen-induced pituitary tumorigenesis QTL 16	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	47233430	110362260	Rat
631649	Bp123	Blood pressure QTL 123	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	89772419	134772419	Rat
61419	Cia11	Collagen induced arthritis QTL 11	5.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	3	30356773	98535386	Rat
12879848	Bw181	Body weght QTL 181		0.015	body mass (VT:0001259)	body weight (CMO:0000012)	3	70348525	121056321	Rat
2301971	Cm71	Cardiac mass QTL 71	4.63		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	3	41874578	155617519	Rat
1354597	Kidm13	Kidney mass QTL 13	2.9		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	3	41874578	104104347	Rat
2301970	Bw81	Body weight QTL 81	5.19		body mass (VT:0001259)	body weight (CMO:0000012)	3	41874578	155617519	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14489145	121056321	Rat
1581546	Pur13	Proteinuria QTL 13	2.93	0.0335	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	3	78196190	146592722	Rat
631665	Bw8	Body weight QTL 8	5.5		body mass (VT:0001259)	body weight (CMO:0000012)	3	50437042	119183768	Rat
1354604	Bw36	Body weight QTL 36	2.9		body mass (VT:0001259)	body weight (CMO:0000012)	3	33703347	104104347	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14489145	121056321	Rat
1358186	Ept2	Estrogen-induced pituitary tumorigenesis QTL 2	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	47233430	110362260	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XR_001837189	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001837190	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001837191	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001842997	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001842998	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001842999	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005502321	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005502322	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000102697

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	92,485,996 - 92,546,105 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000106304

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	112,940,769 - 112,993,744 (+)	Ensembl
mRatBN7.2 Ensembl	3	92,486,039 - 92,546,105 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000107322

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	112,940,692 - 113,000,358 (+)	Ensembl
mRatBN7.2 Ensembl	3	92,485,996 - 92,546,105 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000109095

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	92,486,022 - 92,546,105 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000111411

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	112,967,551 - 113,000,838 (+)	Ensembl
mRatBN7.2 Ensembl	3	92,486,054 - 92,546,105 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000134014

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	112,976,232 - 112,978,036 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000135130

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	112,940,745 - 112,978,036 (+)	Ensembl

RefSeq Acc Id:

XR_001837189

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	92,486,019 - 92,546,062 (+)	NCBI
Rnor_6.0	3	96,065,836 - 96,132,988 (+)	NCBI

Sequence:

show sequence

GTCGCTATGGTAACTCGTCCGGGTTTCTGAGGTTTCTGTCAACAGTGAGAGGAATAGTGAAGAA
ATGCCTTTCTCCATTTTGCTCTAATTCTCCCTTGGTCCCGGCACTACGATTGTTGCATCCCTCC
ACATCTCCTAAGCACACGGAAGACTAGATGACGTCCTTTGGGGAGTGCGCATTCTGAGAAAACT
TACATGAAGCATCTATAACCGCGCCCAGCTTAAGATAAGGCACACCTCGTTTCACCTCTTTGTG
CTTCTGCACAGAAAATCAGACCTTCTGTTGCAAGATGGCCCTAAGGATTTGACATTGATCACCA
TCATAGAATTGGAACTTACAAATATTTTTCTCTTGGTAACACTCTGCAGATGGTTAAGAGCCAG
CACGTGGTTGCTGGGGATTGAACTCAGGACACTGTAGCTAACCATTGTCGGTAACTCCAGTTCC
CGGAACTCCAGCACTGTCTCTGCCCTCCATGGGCAGCCCACATGCGAGTGATGCACACATACAT
ACAAGTAAAGCACCCGCATAGACAGCAAAACTTTGAAGAAAGATAATTTGTTTCCAGCAAATCT
GGACTATAAGAATGTCTGACAAACAACTTAAATCAAGAAAGAGAGTTTGTTCACCTCCTGACAG
ACAAGAGATGGGGAGGTGCAGAAGAAAGAGAGAAGAACAGAGAGGAAGAGAGGGGAGGGAAAAA
GGAGAGGAAAGCAGTCTGGGGCAAGAAAGATCCAAGGACCCACTGTAGTGACTTACTTCCTTCA
GCTGCAAAGTGGCTATAAGTTTCAAGTGGTCCCTGAAAGAACACCTCAGCTGGACTCAACCCCT
CAAATCACAAGCCTTTTGGAAGACCAGTTCACATCCAAACTGAACAGTACATTTCCTAGAACAC
CAAAGTCTCATGTGCGTCTCACAAGGTAATATTTGGTATACCAAGGGTTCCCAAAGCCTTATCA
GTTCAAACATTGTTGACAATTTAGGTTCAATTAAGATCTGAGACTCAAGGCAAATTTTTACTCT
TAGGCTCTATAAAATAAAACAA

hide sequence

RefSeq Acc Id:

XR_001837190

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	92,486,054 - 92,546,067 (+)	NCBI
Rnor_6.0	3	96,065,830 - 96,132,988 (+)	NCBI

Sequence:

show sequence

GACGCGGTCGCTATGGTAACTCGTCCGGGTTTCTGAGGTTTCTGTCAACAGTGAGAGGAATAGT
GAAGAAATGCCTTTCTCCATTTTGCTCTAATTCTCCCTTGGTCCCGGCACTACGATTGTTGCAT
CCCTCCACATCTCCTAAGGAGTGGGTGCCAGCTGACAATGGGAGAGACTGTGTAACAGAGCGAG
ATAGCCACGGACTTCCTAGTAGGCTCCACTTCCCTACCCAAGCCACAGCAACACACACGGAAGA
CTAGATGACGTCCTTTGGGGAGTGCGCATTCTGAGAAAACTTACATGAAGCATCTATAACCGCG
CCCAGCTTAAGATAAGGCACACCTCGTTTCACCTCTTTGTGCTTCTGCACAGAAAATCAGACCT
TCTGTTGCAAGATGGCCCTAAGGATTTGACATTGATCACCATCATAGAATTGGAACTTACAAAT
ATTTTTCTCTTGGTAACACTCTGCAGATGGTTAAGAGCCAGCACGTGGTTGCTGGGGATTGAAC
TCAGGACACTGTAGCTAACCATTGTCGGTAACTCCAGTTCCCGGAACTCCAGCACTGTCTCTGC
CCTCCATGGGCAGCCCACATGCGAGTGATGCACACATACATACAAGTAAAGCACCCGCATAGAC
AGCAAAACTTTGAAGAAAGATAATTTGTTTCCAGCAAATCTGGACTATAAGAATGTCTGACAAA
CAACTTAAATCAAGAAAGAGAGTTTGTTCACCTCCTGACAGACAAGAGATGGGGAGGTGCAGAA
GAAAGAGAGAAGAACAGAGAGGAAGAGAGGGGAGGGAAAAAGGAGAGGAAAGCAGTCTGGGGCA
AGAAAGATCCAAGGACCCACTGTAGTGACTTACTTCCTTCAGCTGCAAAGTGGCTATAAGTTTC
AAGTGGTCCCTGAAAGAACACCTCAGCTGGACTCAACCCCTCAAATCACAAGCCTTTTGGAAGA
CCAGTTCACATCCAAACTGAACAGTACATTTCCTAGAACACCAAAGTCTCATGTGCGTCTCACA
AGGTAATATTTGGTATACCAAGGGTTCCCAAAGCCTTATCAGTTCAAACATTGTTGACAATTTA
GGTTCAATTAAGATCTGAGACTCAAGGCAAATTTTTACTCTTAGGCTCTATAAAATAAAACAA

hide sequence

RefSeq Acc Id:

XR_005502321

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	92,486,032 - 92,546,063 (+)	NCBI

RefSeq Acc Id:

XR_005502322

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	92,486,054 - 92,546,066 (+)	NCBI

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-48507	BioCyc
Ensembl Genes	ENSRNOG00000064622	Ensembl
NCBI Gene	LOC108350428	ENTREZGENE
PhenoGen	LOC108350428	PhenoGen
RatGTEx	ENSRNOG00000064622	RatGTEx
RNAcentral	URS0000CCEDA9	RNACentral
	URS0000CCEF78	RNACentral
	URS0000CD047B	RNACentral
	URS00022B7211	RNACentral
	URS00022B759F	RNACentral
	URS00022B782C	RNACentral
	URS00022B7D52	RNACentral
	URS00022B7F77	RNACentral

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-08-02	LOC108350428	uncharacterized LOC108350428			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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