Trav34l (T cell receptor alpha variable 34 like) - Rat Genome Database

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Gene: Trav34l (T cell receptor alpha variable 34 like) Rattus norvegicus
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Symbol: Trav34l
Name: T cell receptor alpha variable 34 like
RGD ID: 11454121
Description: Predicted to be involved in adaptive immune response. Predicted to be located in plasma membrane. Predicted to be part of T cell receptor complex. Orthologous to several human genes including TRAV34 (T cell receptor alpha variable 34).
Type: gene (Ensembl: protein-coding)
RefSeq Status: MODEL
Previously known as: ENSRNOG00000068621; LOC108353026; uncharacterized LOC108353026
RGD Orthologs
Human
Mouse
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81531,297,513 - 31,299,617 (+)NCBIGRCr8GRCr8GRCr8
mRatBN7.21527,327,456 - 27,329,554 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1527,327,462 - 27,328,325 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1527,327,462 - 27,328,325 (+)EnsemblmRatBN7.2
Rnor_6.01532,515,873 - 32,517,280 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Celera1526,910,427 - 26,911,834 (+)NCBICelera
Cytogenetic Map15p13NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

Genomics

Comparative Map Data
Trav34l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81531,297,513 - 31,299,617 (+)NCBIGRCr8GRCr8GRCr8
mRatBN7.21527,327,456 - 27,329,554 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1527,327,462 - 27,328,325 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1527,327,462 - 27,328,325 (+)EnsemblmRatBN7.2
Rnor_6.01532,515,873 - 32,517,280 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Celera1526,910,427 - 26,911,834 (+)NCBICelera
Cytogenetic Map15p13NCBI
TRAV34
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381422,207,534 - 22,208,129 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1422,207,522 - 22,208,129 (+)Ensemblhg38GRCh38
GRCh371422,675,430 - 22,676,025 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361421,745,270 - 21,745,865 (+)NCBIBuild 36Build 36hg18NCBI36
Celera142,538,968 - 2,539,563 (+)NCBICelera
Cytogenetic Map14q11.2NCBI
HuRef142,793,055 - 2,793,650 (+)NCBIHuRef
CHM1_11422,675,436 - 22,676,031 (+)NCBICHM1_1
T2T-CHM13v2.01416,405,299 - 16,405,894 (+)NCBIT2T-CHM13v2.0
Trdv1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391454,119,069 - 54,119,674 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1454,119,069 - 54,119,674 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381453,881,612 - 53,882,217 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1453,881,612 - 53,882,217 (+)Ensemblmm10GRCm38
MGSCv371454,501,287 - 54,501,892 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
Cytogenetic Map14C2NCBI
cM Map1427.55NCBI

Variants

.
Variants in Trav34l
1 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)15231575947315759Rat
5684946Bss98Bone structure and strength QTL 983.90.0026tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)15139411584Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15144836456Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15231575953331089Rat
10755503Bp391Blood pressure QTL 3912.37arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)152272835342072050Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152852773273527732Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)1525285835104695021Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)152233635152597086Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)1525285835104695021Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151915576287086765Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)15278592347785923Rat
1354657Despr13Despair related QTL 130.0022locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)15132342855Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151492659471614418Rat
631550Bw7Body weight QTL 73.6body mass (VT:0001259)body weight (CMO:0000012)152233635167336351Rat
5685002Bss103Bone structure and strength QTL 1032.8tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)151691152132439851Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)1525285835104695021Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
hemolymphoid system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
sensory system
visual system
1 11 6 63 98 78 5 2 19 10 2 2

Sequence


Ensembl Acc Id: ENSRNOT00000103116   ⟹   ENSRNOP00000080146
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1527,327,462 - 27,328,325 (+)Ensembl
RefSeq Acc Id: XR_001841511
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01532,515,873 - 32,517,280 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001846266
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1526,910,427 - 26,911,834 (+)NCBI
Sequence:
Protein Sequences
Ensembl Protein ENSRNOP00000080146.1
Ensembl Acc Id: ENSRNOP00000080146   ⟸   ENSRNOT00000103116
Protein Domains
Ig-like

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:11454121 AgrOrtholog
BioCyc Gene G2FUF-13828 BioCyc
Ensembl Genes ENSRNOG00000068621 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00000089630 ENTREZGENE
Ensembl Transcript ENSRNOT00000103116.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_V-set UniProtKB/TrEMBL
  TCR_alpha_variable UniProtKB/TrEMBL
NCBI Gene LOC108353026 ENTREZGENE
PANTHER IG-LIKE DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  T CELL RECEPTOR ALPHA VARIABLE 39 UniProtKB/TrEMBL
Pfam V-set UniProtKB/TrEMBL
PhenoGen Trav34l PhenoGen
PROSITE IG_LIKE UniProtKB/TrEMBL
RatGTEx ENSRNOG00000068621 RatGTEx
  ENSRNOG00000089630 RatGTEx
RNAcentral URS0000CCF089 RNACentral
SMART IGv UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt A0A8I6G465_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Trav34l  T cell receptor alpha variable 34 like  LOC108353026  uncharacterized LOC108353026  Symbol and Name Changed 1299863 APPROVED
2022-06-02 LOC108353026  uncharacterized LOC108353026  ENSRNOG00000068621    Data merged from RGD:150343895 737654 PROVISIONAL
2021-08-31 ENSRNOG00000068621        Symbol and Name status set to provisional 45752 PROVISIONAL
2016-08-02 LOC108353026  uncharacterized LOC108353026      Symbol and Name status set to provisional 70820 PROVISIONAL