LOC108351994 (exocrine gland-secreted peptide 1-like) - Rat Genome Database

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Gene: LOC108351994 (exocrine gland-secreted peptide 1-like) Rattus norvegicus
Analyze
No known orthologs.
Symbol: LOC108351994
Name: exocrine gland-secreted peptide 1-like
RGD ID: 11433453
Description: Predicted to enable pheromone activity. Predicted to be involved in signal transduction. Predicted to be located in extracellular space.
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8927,704,219 - 27,709,493 (+)NCBIGRCr8
mRatBN7.2920,205,727 - 20,212,941 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl920,208,533 - 20,212,940 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0923,596,964 - 23,601,370 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl923,596,964 - 23,601,370 (+)EnsemblRnor6.0rn6Rnor6.0
Celera917,884,612 - 17,889,020 (+)NCBICelera
Cytogenetic Map9q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Variants

.
Variants in LOC108351994
124 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:117
Count of miRNA genes:107
Interacting mature miRNAs:111
Transcripts:ENSRNOT00000064279
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70226Eae4Experimental allergic encephalomyelitis QTL 4nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)9125661317Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)9137999212Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9137999212Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)9137999212Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9140594091Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9143718459Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9143718459Rat
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9125408446254084Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9125408446254084Rat
61425Cia15Collagen induced arthritis QTL 154.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)9510982642921101Rat
631211Bw4Body weight QTL45.31retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)9510982650109826Rat
11353947Bp392Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)9728325252283252Rat
61450Ciaa3CIA Autoantibody QTL 36.5blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)9795472022071169Rat
9589133Insul26Insulin level QTL 2617.960.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)9895256053952560Rat
7411609Foco16Food consumption QTL 1625.60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9895256053952560Rat
1600365Mcs20Mammary carcinoma susceptibility QTL 203mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)91353377042791750Rat
724543Cm20Cardiac mass QTL 203.9heart mass (VT:0007028)calculated heart weight (CMO:0000073)91696139840594091Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

nervous system reproductive system respiratory system
High
Medium
Low 9
Below cutoff 2 8 1

Sequence


RefSeq Acc Id: ENSRNOT00000064279   ⟹   ENSRNOP00000059778
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl920,208,533 - 20,212,940 (+)Ensembl
Rnor_6.0 Ensembl923,596,964 - 23,601,370 (+)Ensembl
RefSeq Acc Id: XM_017596895   ⟹   XP_017452384
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8927,704,219 - 27,709,493 (+)NCBI
mRatBN7.2920,205,727 - 20,212,941 (+)NCBI
Rnor_6.0923,596,964 - 23,601,370 (+)NCBI
Sequence:
RefSeq Acc Id: XR_010054731
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8927,704,219 - 27,708,067 (+)NCBI
Protein Sequences
Protein RefSeqs XP_017452384 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000059778
  ENSRNOP00000059778.2
RefSeq Acc Id: XP_017452384   ⟸   XM_017596895
- UniProtKB: F1LSJ7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000059778   ⟸   ENSRNOT00000064279

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LSJ7-F1-model_v2 AlphaFold F1LSJ7 1-150 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:11433453 AgrOrtholog
BioCyc Gene G2FUF-28076 BioCyc
Ensembl Genes ENSRNOG00000046783 Ensembl
  ENSRNOG00000063860 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000064279.3 UniProtKB/TrEMBL
Gene3D-CATH 1.20.50.60 UniProtKB/TrEMBL
InterPro Esp1/Esp22 UniProtKB/TrEMBL
  Esp1_core UniProtKB/TrEMBL
KEGG Report rno:108351994 UniProtKB/TrEMBL
NCBI Gene LOC108351994 ENTREZGENE
Pfam ESP UniProtKB/TrEMBL
PhenoGen LOC108351994 PhenoGen
RatGTEx ENSRNOG00000046783 RatGTEx
  ENSRNOG00000063860 RatGTEx
UniProt F1LSJ7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-02 LOC108351994  exocrine gland-secreted peptide 1-like      Symbol and Name status set to provisional 70820 PROVISIONAL