Spetex2el3 (Spetex-2E protein like 3) - Rat Genome Database

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Gene: Spetex2el3 (Spetex-2E protein like 3) Rattus norvegicus
Analyze
Symbol: Spetex2el3 (Ensembl: LOC108351885)
Name: Spetex-2E protein like 3 (Ensembl:uncharacterized LOC108351885)
RGD ID: 11396250
Description:
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC108351885; LOC108352802; uncharacterized LOC108351885; uncharacterized LOC108352802; uncharacterized protein LOC108351885; uncharacterized protein Spetex2el3
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8915,072,787 - 15,090,658 (+)NCBIGRCr8
mRatBN7.2910,025,221 - 10,036,771 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl910,022,838 - 10,086,253 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0912,470,783 - 12,482,984 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Cytogenetic Map9q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:12477932  


Genomics

Variants

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Variants in Spetex2el3
500 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10054141Gmadr4Adrenal mass QTL 42.450.0074adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)9114209783Rat
70226Eae4Experimental allergic encephalomyelitis QTL 4nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)9125661317Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)9137999212Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9137999212Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)9137999212Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9140594091Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9143718459Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9143718459Rat
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9125408446254084Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9125408446254084Rat
1578675Bss17Bone structure and strength QTL 173.8femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)9336865213533896Rat
61425Cia15Collagen induced arthritis QTL 154.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)9510982642921101Rat
631211Bw4Body weight QTL45.31retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)9510982650109826Rat
11353947Bp392Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)9728325252283252Rat
61450Ciaa3CIA Autoantibody QTL 36.5blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)9795472022071169Rat
9589133Insul26Insulin level QTL 2617.960.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)9895256053952560Rat
7411609Foco16Food consumption QTL 1625.60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9895256053952560Rat


Expression


Sequence


RefSeq Acc Id: ENSRNOT00000094079   ⟹   ENSRNOP00000081552
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl910,022,838 - 10,086,253 (+)Ensembl
RefSeq Acc Id: XM_039084442   ⟹   XP_038940370
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8915,080,986 - 15,090,658 (+)NCBI
mRatBN7.2910,025,227 - 10,036,498 (+)NCBI
RefSeq Acc Id: XM_063268028   ⟹   XP_063124098
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8915,072,787 - 15,090,658 (+)NCBI
Protein Sequences
Protein RefSeqs XP_038940370 (Get FASTA)   NCBI Sequence Viewer  
  XP_063124098 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000081552.1
RefSeq Acc Id: XP_038940370   ⟸   XM_039084442
- Peptide Label: isoform X1
RefSeq Acc Id: ENSRNOP00000081552   ⟸   ENSRNOT00000094079
RefSeq Acc Id: XP_063124098   ⟸   XM_063268028
- Peptide Label: isoform X2
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-28357 BioCyc
Ensembl Genes ENSRNOG00000068779 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000094079.1 UniProtKB/TrEMBL
InterPro DUF622 UniProtKB/TrEMBL
NCBI Gene LOC108351885 ENTREZGENE
PANTHER 2610042L04RIK PROTEIN-RELATED UniProtKB/TrEMBL
  SPEER/SPETEX UniProtKB/TrEMBL
Pfam Takusan UniProtKB/TrEMBL
PhenoGen Spetex2el3 PhenoGen
RatGTEx ENSRNOG00000068779 RatGTEx
UniProt A0A8I5ZV94_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-10-16 Spetex2el3  Spetex-2E protein like 3  Spetex2el1  Spetex-2E protein like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2023-09-19 Spetex2el1  Spetex-2E protein like 1  LOC108351885  uncharacterized LOC108351885  Symbol and Name Changed 1299863 APPROVED
2021-03-09 LOC108351885  uncharacterized LOC108351885  LOC108352802  uncharacterized LOC108352802  Data merged from RGD:11410540 737654 PROVISIONAL
2016-08-02 LOC108351885  uncharacterized LOC108351885      Symbol and Name status set to provisional 70820 PROVISIONAL
2016-08-02 LOC108352802  uncharacterized LOC108352802      Symbol and Name status set to provisional 70820 PROVISIONAL