Ccdc194 (coiled-coil domain containing 194) - Rat Genome Database

Send us a Message



 Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Community Projects (beta) QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap)  (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Ccdc194 (coiled-coil domain containing 194) Rattus norvegicus
Analyze
Symbol: Ccdc194
Name: coiled-coil domain containing 194
RGD ID: 11373735
Description: INTERACTS WITH aristolochic acid A (ortholog); Licochalcone B (ortholog); lipopolysaccharide (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: coiled-coil domain-containing protein 194; LOC108353095; uncharacterized LOC108353095; uncharacterized protein LOC108353095
RGD Orthologs
Human
Mouse
Bonobo
Dog
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21618,205,099 - 18,209,310 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1618,205,095 - 18,209,283 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01619,926,481 - 19,930,570 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Celera1618,410,056 - 18,414,145 (-)NCBICelera
Cytogenetic Map16p14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Ccdc194
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21618,205,099 - 18,209,310 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1618,205,095 - 18,209,283 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01619,926,481 - 19,930,570 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Celera1618,410,056 - 18,414,145 (-)NCBICelera
Cytogenetic Map16p14NCBI
CCDC194
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381917,387,196 - 17,394,196 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1917,387,196 - 17,394,196 (-)EnsemblGRCh38hg38GRCh38
GRCh371917,498,005 - 17,505,005 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map19p13.11NCBI
T2T-CHM13v2.01917,521,944 - 17,528,920 (-)NCBIT2T-CHM13v2.0
Ccdc194
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39871,972,762 - 71,978,369 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl871,972,764 - 71,978,355 (-)EnsemblGRCm39 Ensembl
GRCm38871,520,118 - 71,525,725 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl871,520,120 - 71,525,711 (-)EnsemblGRCm38mm10GRCm38
Celera874,030,387 - 74,038,131 (-)NCBICelera
Cytogenetic Map8B3.3NCBI
CCDC194
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan11921,265,153 - 21,279,808 (-)NCBINHGRI_mPanPan1
LOC102155151
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12045,392,460 - 45,395,513 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2045,392,103 - 45,395,187 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2045,305,641 - 45,307,495 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02045,879,105 - 45,880,966 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12045,115,497 - 45,117,351 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02045,525,368 - 45,527,222 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02045,801,169 - 45,803,019 (+)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in Ccdc194
11 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1600369Hcas8Hepatocarcinoma susceptibility QTL 8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)16122477621Rat
631830Alc7Alcohol consumption QTL 72.9consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16126727669Rat
634355Rends4Renal damage susceptibility QTL 40.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)16126727669Rat
1582235Insul8Insulin level QTL 83.30.0063blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)16126727669Rat
9590151Scort8Serum corticosterone level QTL 88.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)16130836262Rat
2302380Slep6Serum leptin concentration QTL 63.36blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)16132139025Rat
2307172Activ4Activity QTL 43.710.00023locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)16133418960Rat
1354584Despr6Despair related QTL 63.10.0067locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16139533930Rat
2303566Bw90Body weight QTL 902body mass (VT:0001259)body weight (CMO:0000012)16139533930Rat
631561Hcuc2Hepatic copper content QTL 22.8liver copper amount (VT:0003065)liver total copper weight (CMO:0001507)16139533949Rat
6903319Bw114Body weight QTL 1142.70.0037body mass (VT:0001259)body weight (CMO:0000012)16143534949Rat
7411664Foco30Food consumption QTL 30110.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)16144588133Rat
1354625Despr7Despair related QTL 73.160.016locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16144977551Rat
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
2293343Glom16Glomerulus QTL 167.4kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1683223646053497Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683223659492508Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683223659492508Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683223659492508Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683223659492508Rat
1300133Rf24Renal function QTL 243.64blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)16338015021361552Rat
2306902Bp339Blood pressure QTL 3390.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16338015043025077Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)16422760943025077Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16422760943025077Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)16422760943025077Rat
737819Hcas4Hepatocarcinoma susceptibility QTL 44.43liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)16422760946975965Rat
61405Niddm6Non-insulin dependent diabetes mellitus QTL 63.660.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)16422760948972724Rat
61338Bp23Blood pressure QTL 234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16422760949227609Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16422760960252231Rat
631517Scl9Serum cholesterol level QTL 93.3blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)161572643321034895Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000100636   ⟹   ENSRNOP00000082049
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1618,205,095 - 18,209,283 (-)Ensembl
RefSeq Acc Id: XM_017600402   ⟹   XP_017455891
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21618,205,099 - 18,209,310 (-)NCBI
Rnor_6.01619,926,481 - 19,930,570 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_017455891 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000082049
  ENSRNOP00000082049.1
Reference Protein Sequences
RefSeq Acc Id: XP_017455891   ⟸   XM_017600402
- UniProtKB: A0A8I6G8X1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000082049   ⟸   ENSRNOT00000100636

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-11845 BioCyc
Ensembl Genes ENSRNOG00000062469 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000100636 ENTREZGENE
  ENSRNOT00000100636.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.1490 UniProtKB/TrEMBL
KEGG Report rno:108353095 UniProtKB/TrEMBL
NCBI Gene LOC108353095 ENTREZGENE
PhenoGen Ccdc194 PhenoGen
RatGTEx ENSRNOG00000062469 RatGTEx
UniProt A0A8I6G8X1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 Ccdc194  coiled-coil domain containing 194  Ccdc194  coiled-coil domain containing 194  Data merged from RGD:149736225 737654 PROVISIONAL
2021-08-09 Ccdc194  coiled-coil domain containing 194      Symbol and Name status set to provisional 45752 PROVISIONAL
2021-01-28 Ccdc194  coiled-coil domain containing 194  LOC108353095  uncharacterized LOC108353095  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-08-02 LOC108353095  uncharacterized LOC108353095      Symbol and Name status set to provisional 70820 PROVISIONAL