Slc6a3 (solute carrier family 6 (neurotransmitter transporter, dopamine), member 3) - Rat Genome Database

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Gene: Slc6a3 (solute carrier family 6 (neurotransmitter transporter, dopamine), member 3) Mus musculus
Analyze
Symbol: Slc6a3
Name: solute carrier family 6 (neurotransmitter transporter, dopamine), member 3
RGD ID: 11315
MGI Page MGI
Description: Enables dopamine binding activity; dopamine:sodium symporter activity; and neurotransmitter transmembrane transporter activity. Involved in dopamine uptake; hyaloid vascular plexus regression; and neurotransmitter uptake. Acts upstream of or within several processes, including dopamine metabolic process; lactation; and prepulse inhibition. Located in axon terminus and cell surface. Is expressed in genitourinary system; nervous system; spleen; and submandibular gland. Used to study Gilles de la Tourette syndrome; attention deficit hyperactivity disorder; and schizophrenia. Human ortholog(s) of this gene implicated in attention deficit hyperactivity disorder; classic dopamine transporter deficiency syndrome; mild cognitive impairment; nicotine dependence; and obesity. Orthologous to human SLC6A3 (solute carrier family 6 member 3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: DA; DA transporter; DAT; Dat1; dopamine transporter 1; sodium-dependent dopamine transporter; solute carrier family 6 member 3
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391373,684,270 - 73,726,791 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1373,684,866 - 73,726,791 (+)EnsemblGRCm39 Ensembl
GRCm381373,536,128 - 73,578,672 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1373,536,747 - 73,578,672 (+)EnsemblGRCm38mm10GRCm38
MGSCv371373,674,195 - 73,716,120 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361374,002,749 - 74,044,674 (+)NCBIMGSCv36mm8
Celera1375,865,546 - 75,907,463 (+)NCBICelera
Cytogenetic Map13C1NCBI
cM Map1340.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(20S)-ginsenoside Rg3  (EXP)
(R)-noradrenaline  (ISO)
(R)-octopamine  (ISO)
(S)-amphetamine  (EXP,ISO)
(S)-naringenin  (ISO)
(S)-nicotine  (EXP,ISO)
1,2-dimethylhydrazine  (EXP)
1-(2-(diphenylmethoxy)ethyl)-4-(2-(4-azido-3-iodophenyl)ethyl)piperazine  (ISO)
1-[2-(benzhydryloxy)ethyl]-4-(3-phenylpropyl)piperazine  (EXP,ISO)
1-[3-(dimethylamino)propyl]-1-(4-fluorophenyl)-1,3-dihydro-2-benzofuran-5-carbonitrile  (EXP,ISO)
1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine  (EXP)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (EXP)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,5-dimethoxy-4-bromophenethylamine  (ISO)
2-aminopropiophenone  (EXP)
2-phenylethylamine  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-\{1-[3-(dimethylamino)propyl]-1H-indol-3-yl\}-4-(1H-indol-3-yl)-1H-pyrrole-2,5-dione  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-[2-(diphenylmethoxy)ethyl]-1-[(4-azidophenyl)-methyl]-piperidine  (ISO)
4-nitrotoluene  (ISO)
7-NITROINDAZOLE  (EXP)
acrylamide  (ISO)
albiflorin  (ISO)
alcohol  (EXP)
all-trans-retinoic acid  (ISO)
alpha,alpha-trehalose  (EXP)
aluminium hydroxide  (ISO)
AM-251  (ISO)
aminorex  (ISO)
ammonium chloride  (ISO)
amphetamine  (EXP,ISO)
Aroclor 1254  (EXP,ISO)
arsenite(3-)  (EXP,ISO)
atrazine  (ISO)
Azoxymethane  (EXP)
benzatropine  (ISO)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
bis(2-chloroethyl) sulfide  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
bupropion  (ISO)
butyric acid  (ISO)
cadmium dichloride  (ISO)
caffeine  (EXP,ISO)
calcitriol  (ISO)
cannabidiol  (EXP)
carbamazepine  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (EXP,ISO)
citalopram  (EXP,ISO)
clozapine  (ISO)
cocaine  (EXP,ISO)
crocidolite asbestos  (ISO)
curcumin  (ISO)
cyhalothrin  (ISO)
DDD  (EXP)
DDE  (EXP,ISO)
DDT  (EXP)
deguelin  (ISO)
dextran sulfate  (EXP)
diazinon  (ISO)
dieldrin  (EXP,ISO)
diethyldithiocarbamic acid  (ISO)
diethylstilbestrol  (ISO)
dihydro-beta-erythroidine  (ISO)
dithionite(2-)  (EXP)
dopamine  (EXP,ISO)
elemental selenium  (ISO)
endosulfan  (ISO)
epoxiconazole  (EXP)
estrone  (EXP)
ethanol  (EXP)
fluoxetine  (EXP,ISO)
fulvestrant  (ISO)
ganglioside GM1  (ISO)
geraniol  (EXP)
glyburide  (EXP)
glyphosate  (EXP)
haloperidol  (EXP,ISO)
heptachlor  (EXP,ISO)
herbicide  (ISO)
ibogaine  (ISO)
ibuprofen  (EXP)
iron atom  (ISO)
iron(0)  (ISO)
isoliquiritigenin  (EXP)
ketamine  (ISO)
linalool  (ISO)
lipopolysaccharide  (EXP)
LY294002  (EXP)
maneb  (EXP,ISO)
manganese atom  (EXP,ISO)
manganese(0)  (EXP,ISO)
manganese(II) chloride  (EXP,ISO)
Mazindol  (EXP,ISO)
Mecamylamine  (ISO)
melatonin  (EXP,ISO)
melittin  (ISO)
mephedrone  (EXP,ISO)
mepyramine  (ISO)
methamphetamine  (EXP,ISO)
methapyrilene  (ISO)
methcathinone  (ISO)
methoxychlor  (EXP)
methylmercury chloride  (EXP)
methylphenidate  (EXP,ISO)
minocycline  (EXP)
modafinil  (EXP,ISO)
monensin A  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
n-[4-(3-iodo-4-azidophenyl)butyl]-2beta-carbomethoxy-3beta-(4-chlorophenyl)tropane  (ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
N-ethyl-N-nitrosourea  (ISO)
N-methyl-4-phenylpyridinium  (EXP,ISO)
naltrexone  (EXP,ISO)
nicotine  (EXP,ISO)
nomifensine  (ISO)
Nonylphenol  (ISO)
octopamine  (ISO)
oleic acid  (EXP)
oxidopamine  (ISO)
paraquat  (EXP,ISO)
permethrin  (EXP,ISO)
phentermine  (EXP)
phorbol 13-acetate 12-myristate  (ISO)
picoxystrobin  (ISO)
piperazines  (ISO)
piperidines  (ISO)
pirinixic acid  (EXP,ISO)
probenecid  (EXP)
propofol  (EXP)
quinolinic acid  (ISO)
quinpirole  (ISO)
raloxifene  (ISO)
reboxetine  (EXP)
reserpine  (EXP)
resveratrol  (ISO)
rotenone  (ISO)
rottlerin  (EXP)
SCH 23390  (EXP)
selenium atom  (ISO)
serotonin  (ISO)
simazine  (EXP,ISO)
staurosporine  (ISO)
sulpiride  (EXP,ISO)
tamoxifen  (ISO)
telmisartan  (EXP)
testosterone  (ISO)
tetrachloromethane  (ISO)
Theaflavin 3,3'-digallate  (ISO)
thifluzamide  (ISO)
thimerosal  (ISO)
titanium dioxide  (EXP)
toluene  (ISO)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
tryptamine  (ISO)
tyramine  (ISO)
valproic acid  (ISO)
vanoxerine dihydrochloride  (EXP,ISO)
vinclozolin  (ISO)
vorinostat  (ISO)
WIN 55212-2  (ISO)
wortmannin  (ISO)
zinc atom  (ISO)
zinc sulfate  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
alfentanil pharmacodynamics pathway  (ISO)
bupivacaine pharmacodynamics pathway  (ISO)
buprenorphine pharmacodynamics pathway  (ISO)
chloroprocaine pharmacodynamics pathway  (ISO)
citalopram pharmacodynamics pathway  (ISO)
cocaine pharmacodynamics pathway  (ISO)
codeine and morphine pharmacodynamics pathway  (ISO)
desipramine pharmacodynamics pathway  (ISO)
diphenoxylate pharmacodynamics pathway  (ISO)
escitalopram pharmacodynamics pathway  (ISO)
ethylmorphine pharmacodynamics pathway  (ISO)
fentanyl pharmacodynamics pathway  (ISO)
fluoxetine pharmacodynamics pathway  (ISO)
heroin pharmacodynamics pathway  (ISO)
hydrocodone pharmacodynamics pathway  (ISO)
hydromorphone pharmacodynamics pathway  (ISO)
imipramine pharmacodynamics pathway  (ISO)
levacetylmethadol pharmacodynamics pathway  (ISO)
levobupivacaine phgarmacodynamics pathway  (ISO)
levorphanol pharmacodynamics pathway  (ISO)
lidocaine pharmacodynamics pathway  (ISO)
mepivacaine pharmacodynamics pathway  (ISO)
methadone pharmacodynamics pathway  (ISO)
nalbuphine pharmacodynamics pathway  (ISO)
naloxone pharmacodynamics pathway  (ISO)
naltrexone pharmacodynamics pathway  (ISO)
nicotine pharmacodynamics pathway  (ISO)
oxybuprocaine pharmacodynamics pathway  (ISO)
oxycodone pharmacodynamics pathway  (ISO)
oxymorphone pharmacodynamics pathway   (ISO)
Parkinson's disease pathway  (IEA)
pentazocine pharmacodynamics pathway  (ISO)
prilocaine pharmacodynamics pathway  (ISO)
procaine pharmacodynamics pathway  (ISO)
remifentanil pharmacodynamics pathway  (ISO)
ropivacaine pharmacodynamics pathway  (ISO)
tramadol pharmacodynamics pathway  (ISO)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal action potential  (IAGP)
abnormal adenohypophysis morphology  (IAGP)
abnormal associative learning  (IAGP)
abnormal autophagy  (IAGP)
abnormal axon morphology  (IAGP)
abnormal axonal transport  (IAGP)
abnormal behavior  (IAGP)
abnormal behavioral response to addictive substance  (IAGP)
abnormal behavioral response to xenobiotic  (IAGP)
abnormal chemokine secretion  (IAGP)
abnormal CNS synaptic transmission  (IAGP)
abnormal dendrite morphology  (IAGP)
abnormal dopaminergic neuron morphology  (IAGP)
abnormal dorsal striatum morphology  (IAGP)
abnormal excitatory postsynaptic currents  (IAGP)
abnormal gait  (IAGP)
abnormal grooming behavior  (IAGP)
abnormal inhibitory postsynaptic currents  (IAGP)
abnormal innervation  (IAGP)
abnormal limb posture  (IAGP)
abnormal locomotor activation  (IAGP)
abnormal locomotor behavior  (IAGP)
abnormal lysosome morphology  (IAGP)
abnormal lysosome physiology  (IAGP)
abnormal maternal nurturing  (IAGP)
abnormal midbrain morphology  (IAGP)
abnormal miniature excitatory postsynaptic currents  (IAGP)
abnormal miniature inhibitory postsynaptic current frequency  (IAGP)
abnormal mitochondrial morphology  (IAGP)
abnormal mitochondrial physiology  (IAGP)
abnormal mitochondrial shape  (IAGP)
abnormal motor capabilities/coordination/movement  (IAGP)
abnormal motor coordination/balance  (IAGP)
abnormal nervous system electrophysiology  (IAGP)
abnormal nervous system physiology  (IAGP)
abnormal neuron differentiation  (IAGP)
abnormal neuron morphology  (IAGP)
abnormal neuron physiology  (IAGP)
abnormal neurotransmitter uptake  (IAGP)
abnormal noradrenaline level  (IAGP)
abnormal operant conditioning behavior  (IAGP)
abnormal physiological response to xenobiotic  (IAGP)
abnormal pituitary gland physiology  (IAGP)
abnormal pituitary secretion  (IAGP)
abnormal respiratory electron transport chain  (IAGP)
abnormal response to novel object  (IAGP)
abnormal response to novel odor  (IAGP)
abnormal response/metabolism to endogenous compounds  (IAGP)
abnormal single cell response  (IAGP)
abnormal spatial learning  (IAGP)
abnormal striatum morphology  (IAGP)
abnormal substantia nigra morphology  (IAGP)
abnormal substantia nigra pars compacta morphology  (IAGP)
abnormal substantia nigra pars reticulata morphology  (IAGP)
abnormal synapse morphology  (IAGP)
abnormal synaptic bouton morphology  (IAGP)
abnormal synaptic dopamine release  (IAGP)
abnormal synaptic vesicle number  (IAGP)
abnormal tooth morphology  (IEA)
absent teeth  (IEA)
adenohypophysis hypoplasia  (IAGP)
behavioral despair  (IAGP)
bradykinesia  (IAGP)
decreased body size  (IAGP)
decreased body weight  (IAGP)
decreased circulating free fatty acids level  (IEA)
decreased dopamine level  (IAGP)
decreased dopaminergic neuron number  (IAGP)
decreased exploration in new environment  (IAGP)
decreased lactotroph cell number  (IAGP)
decreased length of long bones  (IAGP)
decreased locomotor activity  (IAGP)
decreased mitochondrial number  (IAGP)
decreased mitochondrial size  (IAGP)
decreased neuron number  (IAGP)
decreased neurotransmitter release  (IAGP)
decreased physiological sensitivity to xenobiotic  (IAGP)
decreased somatotroph cell number  (IAGP)
decreased susceptibility to dopaminergic neuron neurotoxicity  (IAGP)
decreased vertical activity  (IAGP)
disproportionate dwarf  (IAGP)
enhanced behavioral response to cocaine  (IAGP)
enhanced behavioral response to nicotine  (IAGP)
enhanced long-term potentiation  (IAGP)
hindlimb paralysis  (IAGP)
hunched posture  (IAGP)
hyperactivity  (IAGP)
hypopituitarism  (IAGP)
impaired behavioral response to cocaine  (IAGP)
impaired behavioral response to nicotine  (IAGP)
impaired conditioned place preference behavior  (IAGP)
impaired coordination  (IAGP)
impaired olfaction  (IAGP)
impaired short-term object recognition memory  (IAGP)
increased circulating sodium level  (IEA)
increased dopamine level  (IAGP)
increased exploration in new environment  (IAGP)
increased heart weight  (IEA)
increased interleukin-1 beta secretion  (IAGP)
increased locomotor activity  (IAGP)
increased microglial cell activation  (IAGP)
increased miniature excitatory postsynaptic current amplitude  (IAGP)
increased miniature excitatory postsynaptic current frequency  (IAGP)
increased mitochondrial size  (IAGP)
increased neuron number  (IAGP)
increased physiological sensitivity to xenobiotic  (IAGP)
increased serotonin level  (IAGP)
increased stereotypic behavior  (IAGP)
increased susceptibility to dopaminergic neuron neurotoxicity  (IAGP)
increased thigmotaxis  (IAGP)
increased vertical activity  (IAGP)
induced hyperactivity  (IAGP)
kyphosis  (IAGP)
lactation failure  (IAGP)
lethality at weaning, complete penetrance  (IAGP)
lethality, incomplete penetrance  (IAGP)
loss of dopaminergic neurons  (IAGP)
microgliosis  (IAGP)
muscle hypertonia  (IAGP)
muscle spasm  (IAGP)
neurodegeneration  (IAGP)
neuron degeneration  (IAGP)
neuron hypertrophy  (IAGP)
neuronal cytoplasmic inclusions  (IAGP)
neuronal intranuclear inclusions  (IAGP)
no abnormal phenotype detected  (IAGP)
pituitary intermediate lobe hypoplasia  (IAGP)
postnatal growth retardation  (IAGP)
premature death  (IAGP)
reduced long-term potentiation  (IAGP)
short stride length  (IAGP)
slow postnatal weight gain  (IAGP)
small pituitary gland  (IAGP)
tremors  (IAGP)
weight loss  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Dopamine transporter genotype as a risk factor for obesity in African-American smokers. Epstein LH, etal., Obes Res. 2002 Dec;10(12):1232-40.
2. Dopamine DRD2/ANKK1 Taq1A and DAT1 VNTR polymorphisms are associated with a cognitive flexibility profile in pathological gamblers. Fagundo AB, etal., J Psychopharmacol. 2014 Dec;28(12):1170-7. doi: 10.1177/0269881114551079. Epub 2014 Sep 18.
3. Role of serotonin in the paradoxical calming effect of psychostimulants on hyperactivity. Gainetdinov RR, etal., Science 1999 Jan 15;283(5400):397-401.
4. Role of dopamine transporter genotype and maternal prenatal smoking in childhood hyperactive-impulsive, inattentive, and oppositional behaviors. Kahn RS, etal., J Pediatr 2003 Jul;143(1):104-10.
5. The association of dopamine pathway gene score, nicotine dependence and smoking cessation in a rural male population of Shandong, China. Li S, etal., Am J Addict. 2016 Sep;25(6):493-8. doi: 10.1111/ajad.12421. Epub 2016 Aug 4.
6. Changes in Expression of Dopamine, Its Receptor, and Transporter in Nucleus Accumbens of Heroin-Addicted Rats with Brain-Derived Neurotrophic Factor (BDNF) Overexpression. Li Y, etal., Med Sci Monit. 2017 Jun 9;23:2805-2815.
7. Alteration of striatal dopaminergic function induced by glioma development: a microdialysis and immunohistological study in the rat striatum. Lonjon M, etal., Neurosci Lett. 2004 Jan 9;354(2):131-4.
8. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
9. MGDs mouse GO annotations MGD data from the GO Consortium
10. MGD IEA MGD IEA
11. Obesity is associated with genetic variants that alter dopamine availability. Need AC, etal., Ann Hum Genet. 2006 May;70(Pt 3):293-303.
12. Genetic influence of dopamine receptor, dopamine transporter, and nicotine metabolism on smoking cessation and nicotine dependence in a Japanese population. Ohmoto M, etal., BMC Genet. 2014 Dec 20;15:151. doi: 10.1186/s12863-014-0151-2.
13. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
14. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
15. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
16. Mouse MP Annotation Import Pipeline RGD automated import pipeline
17. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
18. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
19. Grafts of adult subependymal zone neuronal progenitor cells rescue hemiparkinsonian behavioral decline. Richardson RM, etal., Brain Res. 2005 Jan 25;1032(1-2):11-22.
20. A Pilot Study of Demographic and Dopaminergic Genetic Contributions to Weight Change in Kidney Transplant Recipients. Stanfill A, etal., PLoS One. 2015 Sep 25;10(9):e0138885. doi: 10.1371/journal.pone.0138885. eCollection 2015.
21. Affinity labeling the dopamine transporter ligand binding site. Vaughan RA, etal., J Neurosci Methods. 2005 Apr 15;143(1):33-40. Epub 2004 Dec 2.
22. Studies on the regulatory effect of Peony-Glycyrrhiza Decoction on prolactin hyperactivity and underlying mechanism in hyperprolactinemia rat model. Wang D, etal., Neurosci Lett. 2015 Oct 8;606:60-5. doi: 10.1016/j.neulet.2015.08.024. Epub 2015 Aug 18.
23. Brain dopamine transporter in spontaneously hypertensive rats. Watanabe Y, etal., J Nucl Med. 1997 Mar;38(3):470-4.
Additional References at PubMed
PMID:7637582   PMID:8180472   PMID:8628395   PMID:8903735   PMID:8942444   PMID:9037545   PMID:9247269   PMID:9482784   PMID:9520487   PMID:9634552   PMID:9636213   PMID:10072302  
PMID:10195128   PMID:10349636   PMID:10375632   PMID:10404198   PMID:10564358   PMID:10617152   PMID:10637574   PMID:10651856   PMID:10677550   PMID:10792459   PMID:10907725   PMID:10915639  
PMID:10971639   PMID:10998124   PMID:11042159   PMID:11076861   PMID:11150348   PMID:11172062   PMID:11217851   PMID:11312315   PMID:11320258   PMID:11343649   PMID:11404425   PMID:11506886  
PMID:11572967   PMID:11784783   PMID:11803442   PMID:12006604   PMID:12044470   PMID:12099912   PMID:12193195   PMID:12401330   PMID:12466851   PMID:12477932   PMID:12480184   PMID:12586455  
PMID:12617953   PMID:12655306   PMID:12699766   PMID:12764108   PMID:12958210   PMID:14561867   PMID:14593425   PMID:14622207   PMID:14681479   PMID:14684259   PMID:14691264   PMID:14973278  
PMID:14980210   PMID:15136721   PMID:15245485   PMID:15354185   PMID:15447669   PMID:15489334   PMID:15492001   PMID:15542711   PMID:15572278   PMID:15584907   PMID:15710042   PMID:15719221  
PMID:15748955   PMID:15763133   PMID:15856082   PMID:15911120   PMID:16024787   PMID:16050778   PMID:16051150   PMID:16125675   PMID:16141072   PMID:16141073   PMID:16339193   PMID:16364897  
PMID:16423542   PMID:16436185   PMID:16525059   PMID:16602821   PMID:16638624   PMID:16643512   PMID:16675138   PMID:16754872   PMID:16765459   PMID:16848782   PMID:16865686   PMID:16950153  
PMID:16954211   PMID:16968817   PMID:17000016   PMID:17010993   PMID:17035544   PMID:17046697   PMID:17065224   PMID:17065462   PMID:17151600   PMID:17159989   PMID:17227870   PMID:17250681  
PMID:17251429   PMID:17255472   PMID:17296554   PMID:17298183   PMID:17408864   PMID:17433376   PMID:17452640   PMID:17522168   PMID:17584943   PMID:17664021   PMID:17687036   PMID:17761882  
PMID:18056810   PMID:18184785   PMID:18197357   PMID:18347339   PMID:18363853   PMID:18470912   PMID:18495356   PMID:18510945   PMID:18596615   PMID:18617632   PMID:18671743   PMID:18690111  
PMID:18701073   PMID:18790059   PMID:18799693   PMID:18929645   PMID:18953410   PMID:19142237   PMID:19144721   PMID:19176817   PMID:19299613   PMID:19339600   PMID:19357284   PMID:19381303  
PMID:19439492   PMID:19482066   PMID:19515692   PMID:19520064   PMID:19553461   PMID:19576892   PMID:19615345   PMID:19619134   PMID:19666516   PMID:19729052   PMID:19750226   PMID:19750538  
PMID:19766189   PMID:19780901   PMID:19842188   PMID:19906957   PMID:19932884   PMID:20002202   PMID:20016108   PMID:20018672   PMID:20023653   PMID:20062537   PMID:20093142   PMID:20167208  
PMID:20223200   PMID:20382201   PMID:20386724   PMID:20451634   PMID:20457670   PMID:20551317   PMID:20558209   PMID:20610757   PMID:20616081   PMID:20634895   PMID:20656029   PMID:20720111  
PMID:20738906   PMID:20858707   PMID:20976142   PMID:20980993   PMID:21057506   PMID:21060884   PMID:21092858   PMID:21144620   PMID:21148012   PMID:21209835   PMID:21233488   PMID:21267068  
PMID:21270893   PMID:21296093   PMID:21368124   PMID:21399631   PMID:21421642   PMID:21432587   PMID:21439946   PMID:21499253   PMID:21525407   PMID:21677750   PMID:21743470   PMID:21768369  
PMID:21795541   PMID:21813695   PMID:21873635   PMID:21880899   PMID:21880920   PMID:21900559   PMID:21983691   PMID:21990355   PMID:22034972   PMID:22034973   PMID:22069189   PMID:22090423  
PMID:22114279   PMID:22118191   PMID:22131425   PMID:22143804   PMID:22163275   PMID:22196339   PMID:22238104   PMID:22251459   PMID:22258508   PMID:22267337   PMID:22278924   PMID:22330100  
PMID:22393477   PMID:22434189   PMID:22483304   PMID:22537018   PMID:22542182   PMID:22564125   PMID:22572477   PMID:22712725   PMID:22748019   PMID:22778257   PMID:22781838   PMID:22809709  
PMID:22841315   PMID:22859504   PMID:22875923   PMID:22914740   PMID:22961549   PMID:22998728   PMID:23011138   PMID:23034651   PMID:23042896   PMID:23083326   PMID:23100428   PMID:23152632  
PMID:23197738   PMID:23217170   PMID:23240026   PMID:23264561   PMID:23305992   PMID:23458603   PMID:23481388   PMID:23534961   PMID:23558143   PMID:23637192   PMID:23681253   PMID:23817546  
PMID:23817550   PMID:23863478   PMID:23884410   PMID:23921954   PMID:23933217   PMID:23959937   PMID:23977020   PMID:23978383   PMID:24098148   PMID:24133278   PMID:24150248   PMID:24155314  
PMID:24194600   PMID:24332984   PMID:24348261   PMID:24411735   PMID:24486705   PMID:24497577   PMID:24550305   PMID:24673634   PMID:24742619   PMID:24776686   PMID:24790206   PMID:24799694  
PMID:24802380   PMID:24811384   PMID:24843012   PMID:24886986   PMID:24922073   PMID:24952961   PMID:24979798   PMID:25005251   PMID:25063810   PMID:25068655   PMID:25071457   PMID:25091505  
PMID:25127144   PMID:25171792   PMID:25258080   PMID:25331903   PMID:25339743   PMID:25447236   PMID:25505322   PMID:25609609   PMID:25611513   PMID:25611514   PMID:25714923   PMID:25752644  
PMID:25762688   PMID:25782435   PMID:25817859   PMID:25867707   PMID:25915474   PMID:25918399   PMID:25936602   PMID:25948263   PMID:26056851   PMID:26080439   PMID:26086365   PMID:26139373  
PMID:26164566   PMID:26182419   PMID:26203861   PMID:26207352   PMID:26232228   PMID:26278050   PMID:26287463   PMID:26321632   PMID:26335381   PMID:26341832   PMID:26359992   PMID:26364547  
PMID:26365765   PMID:26377476   PMID:26402461   PMID:26407721   PMID:26430123   PMID:26464985   PMID:26551563   PMID:26565913   PMID:26681446   PMID:26699459   PMID:26871628   PMID:26879466  
PMID:26904943   PMID:26912775   PMID:26929359   PMID:26961958   PMID:27003179   PMID:27036891   PMID:27038906   PMID:27053209   PMID:27079169   PMID:27124299   PMID:27124386   PMID:27163179  
PMID:27181061   PMID:27246266   PMID:27273769   PMID:27292633   PMID:27317935   PMID:27346361   PMID:27407143   PMID:27408780   PMID:27467571   PMID:27468917   PMID:27568516   PMID:27581458  
PMID:27618675   PMID:27618677   PMID:27626380   PMID:27647894   PMID:27659966   PMID:27681312   PMID:27703142   PMID:27716510   PMID:27733819   PMID:27760002   PMID:27886263   PMID:27889578  
PMID:27930324   PMID:27966077   PMID:27974817   PMID:27976722   PMID:28009292   PMID:28038352   PMID:28054919   PMID:28103482   PMID:28132830   PMID:28133444   PMID:28174244   PMID:28192395  
PMID:28194005   PMID:28228269   PMID:28244870   PMID:28283558   PMID:28285820   PMID:28297663   PMID:28297715   PMID:28334611   PMID:28369042   PMID:28374752   PMID:28375739   PMID:28376279  
PMID:28394253   PMID:28454982   PMID:28461218   PMID:28462393   PMID:28466093   PMID:28535798   PMID:28595911   PMID:28669546   PMID:28703706   PMID:28714952   PMID:28781050   PMID:28821671  
PMID:28855580   PMID:28894175   PMID:28905875   PMID:28923595   PMID:28938472   PMID:28941296   PMID:28963257   PMID:28964912   PMID:28980939   PMID:29030221   PMID:29030431   PMID:29038581  
PMID:29043563   PMID:29163030   PMID:29167404   PMID:29177188   PMID:29180115   PMID:29222404   PMID:29241537   PMID:29251597   PMID:29256865   PMID:29304042   PMID:29321139   PMID:29337309  
PMID:29355693   PMID:29398114   PMID:29420469   PMID:29527566   PMID:29615705   PMID:29621487   PMID:29656872   PMID:29656874   PMID:29676260   PMID:29676731   PMID:29739866   PMID:29754751  
PMID:29760401   PMID:29789702   PMID:29791835   PMID:29802391   PMID:29911172   PMID:29949769   PMID:29958943   PMID:30007419   PMID:30043140   PMID:30057204   PMID:30093665   PMID:30100256  
PMID:30104732   PMID:30146163   PMID:30177795   PMID:30210305   PMID:30218623   PMID:30228121   PMID:30245012   PMID:30292429   PMID:30295607   PMID:30297767   PMID:30318411   PMID:30323275  
PMID:30344040   PMID:30364230   PMID:30367968   PMID:30373717   PMID:30405240   PMID:30440089   PMID:30442663   PMID:30500562   PMID:30503173   PMID:30522820   PMID:30539268   PMID:30540946  
PMID:30556810   PMID:30568192   PMID:30578419   PMID:30590105   PMID:30605672   PMID:30623173   PMID:30635563   PMID:30659189   PMID:30664247   PMID:30687002   PMID:30689541   PMID:30705619  
PMID:30718039   PMID:30718509   PMID:30726725   PMID:30736837   PMID:30791216   PMID:30804529   PMID:30837265   PMID:30920369   PMID:30930745   PMID:30933310   PMID:30936473   PMID:30970251  
PMID:31000426   PMID:31003725   PMID:31091455   PMID:31094705   PMID:31097625   PMID:31109961   PMID:31144295   PMID:31175277   PMID:31189104   PMID:31202540   PMID:31204082   PMID:31209151  
PMID:31217328   PMID:31226324   PMID:31277924   PMID:31324539   PMID:31348890   PMID:31361457   PMID:31365862   PMID:31449520   PMID:31481399   PMID:31486769   PMID:31505196   PMID:31520365  
PMID:31537790   PMID:31548368   PMID:31596232   PMID:31604921   PMID:31610370   PMID:31619451   PMID:31644913   PMID:31648898   PMID:31665630   PMID:31704785   PMID:31750563   PMID:31826983  
PMID:31835787   PMID:31872525   PMID:31879163   PMID:31883107   PMID:31890743   PMID:31923430   PMID:31953402   PMID:31954621   PMID:31974110   PMID:32005751   PMID:32005765   PMID:32027824  
PMID:32027825   PMID:32043968   PMID:32048995   PMID:32075716   PMID:32075770   PMID:32132171   PMID:32142670   PMID:32145184   PMID:32191871   PMID:32192190   PMID:32209486   PMID:32214250  
PMID:32244769   PMID:32259476   PMID:32294466   PMID:32317389   PMID:32386544   PMID:32415886   PMID:32468214   PMID:32470362   PMID:32490813   PMID:32499648   PMID:32510473   PMID:32535402  
PMID:32561725   PMID:32564285   PMID:32576620   PMID:32576854   PMID:32579581   PMID:32579938   PMID:32581380   PMID:32581704   PMID:32588892   PMID:32640184   PMID:32651365   PMID:32707061  
PMID:32747789   PMID:32763155   PMID:32778904   PMID:32847967   PMID:32859717   PMID:32870779   PMID:32901079   PMID:32923630   PMID:32928885   PMID:32937591   PMID:32961129   PMID:32966778  
PMID:32971195   PMID:32989293   PMID:33009395   PMID:33037215   PMID:33043885   PMID:33046554   PMID:33087905   PMID:33153031   PMID:33175436   PMID:33234607   PMID:33248024   PMID:33255421  
PMID:33301817   PMID:33340529   PMID:33345774   PMID:33361810   PMID:33371336   PMID:33444596   PMID:33483429   PMID:33526942   PMID:33536201   PMID:33558587   PMID:33577882   PMID:33599293  
PMID:33600762   PMID:33608268   PMID:33664134   PMID:33707203   PMID:33766732   PMID:33769619   PMID:33861952   PMID:33872705   PMID:33894367   PMID:33904412   PMID:33932356   PMID:33951422  
PMID:33972988   PMID:33979604   PMID:33979635   PMID:33990773   PMID:34028352   PMID:34088738   PMID:34095148   PMID:34112787   PMID:34143959   PMID:34145364   PMID:34253628   PMID:34301604  
PMID:34302742   PMID:34362731   PMID:34362914   PMID:34373644   PMID:34388372   PMID:34392304   PMID:34399438   PMID:34400288   PMID:34462310   PMID:34496245   PMID:34516792   PMID:34525371  
PMID:34552196   PMID:34552245   PMID:34564702   PMID:34580198   PMID:34592157   PMID:34731609   PMID:34732887   PMID:34756883   PMID:34758317   PMID:34767769   PMID:34789878   PMID:34791217  
PMID:34815379   PMID:34857949   PMID:34884468   PMID:34939925   PMID:34965204   PMID:35021090   PMID:35042768   PMID:35081349   PMID:35087155   PMID:35098924   PMID:35118677   PMID:35129674  
PMID:35134327   PMID:35163036   PMID:35210287   PMID:35210489   PMID:35237127   PMID:35239361   PMID:35239443   PMID:35324301   PMID:35443174   PMID:35476632   PMID:35508124   PMID:35545050  
PMID:35580986   PMID:35584679   PMID:35604019   PMID:35615067   PMID:35618950   PMID:35663010   PMID:35715418   PMID:35778414   PMID:35793636   PMID:35798979   PMID:35831501   PMID:35851573  
PMID:35881440   PMID:35896744   PMID:35931070   PMID:35961792   PMID:35993549   PMID:36001967   PMID:36026451   PMID:36049479   PMID:36054363   PMID:36070748   PMID:36145208   PMID:36179023  
PMID:36192156   PMID:36195641   PMID:36202097   PMID:36209150   PMID:36213756   PMID:36261520   PMID:36281454   PMID:36442744   PMID:36517598   PMID:36579890   PMID:36623805   PMID:36640316  
PMID:36674903   PMID:36693373   PMID:36774552   PMID:36815399   PMID:36867530   PMID:36894577   PMID:36902115   PMID:36917979   PMID:37020025   PMID:37055008   PMID:37068089   PMID:37100211  
PMID:37133648   PMID:37248289   PMID:37298722   PMID:37403228   PMID:37433762   PMID:37451329   PMID:37536343   PMID:37537242   PMID:37554441   PMID:37558490   PMID:37612268   PMID:37640554  
PMID:37657441   PMID:37696450   PMID:37739964   PMID:37741275   PMID:37776853   PMID:37812725   PMID:37816598   PMID:37819757   PMID:37898450   PMID:37907739   PMID:37918396   PMID:37922904  
PMID:37948992   PMID:37987120   PMID:38026162   PMID:38042964   PMID:38086374   PMID:38089585   PMID:38092040   PMID:38242086   PMID:38242115   PMID:38242692   PMID:38267258   PMID:38278147  
PMID:38286627   PMID:38320995   PMID:38355793   PMID:38358887   PMID:38377999   PMID:38386560   PMID:38431842   PMID:38449738   PMID:38486964   PMID:38581677   PMID:38693066   PMID:38762463  
PMID:38784098   PMID:38811857   PMID:38838978   PMID:38959892   PMID:39019613   PMID:39144155   PMID:39153478   PMID:39264811   PMID:39326778   PMID:39379975   PMID:39467829  


Genomics

Comparative Map Data
Slc6a3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391373,684,270 - 73,726,791 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1373,684,866 - 73,726,791 (+)EnsemblGRCm39 Ensembl
GRCm381373,536,128 - 73,578,672 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1373,536,747 - 73,578,672 (+)EnsemblGRCm38mm10GRCm38
MGSCv371373,674,195 - 73,716,120 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361374,002,749 - 74,044,674 (+)NCBIMGSCv36mm8
Celera1375,865,546 - 75,907,463 (+)NCBICelera
Cytogenetic Map13C1NCBI
cM Map1340.1NCBI
SLC6A3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3851,392,794 - 1,445,440 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl51,392,794 - 1,445,440 (-)EnsemblGRCh38hg38GRCh38
GRCh3751,392,909 - 1,445,555 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3651,445,909 - 1,498,538 (-)NCBINCBI36Build 36hg18NCBI36
Build 3451,445,908 - 1,498,543NCBI
Celera51,429,610 - 1,484,220 (-)NCBICelera
Cytogenetic Map5p15.33NCBI
HuRef51,373,680 - 1,426,892 (-)NCBIHuRef
CHM1_151,392,820 - 1,445,528 (-)NCBICHM1_1
T2T-CHM13v2.051,303,172 - 1,357,405 (-)NCBIT2T-CHM13v2.0
Slc6a3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8131,537,990 - 31,578,962 (-)NCBIGRCr8
mRatBN7.2129,709,443 - 29,750,413 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl129,709,443 - 29,750,413 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx129,510,573 - 29,551,545 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0135,510,418 - 35,551,390 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0129,711,198 - 29,752,170 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0132,323,011 - 32,363,983 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl132,321,580 - 32,363,983 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0133,745,060 - 33,788,878 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4130,516,568 - 30,557,540 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1130,518,078 - 30,558,861 (-)NCBI
Celera128,357,426 - 28,397,883 (-)NCBICelera
Cytogenetic Map1p11NCBI
Slc6a3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955504721,429 - 747,630 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955504721,470 - 747,553 (-)NCBIChiLan1.0ChiLan1.0
SLC6A3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v241,659,752 - 1,712,599 (-)NCBINHGRI_mPanPan1-v2
PanPan1.1 Ensembl51,437,567 - 1,488,829 (-)Ensemblpanpan1.1panPan2
SLC6A3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13411,209,118 - 11,245,456 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3411,210,939 - 11,246,742 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3415,719,083 - 15,755,282 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03411,109,747 - 11,147,167 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3411,109,762 - 11,147,159 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13411,160,852 - 11,196,981 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03411,139,913 - 11,176,047 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03411,350,821 - 11,387,021 (+)NCBIUU_Cfam_GSD_1.0
Slc6a3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213244,198,128 - 244,239,922 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936815359,775 - 400,690 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936815359,775 - 400,690 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC6A3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1679,186,108 - 79,220,297 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11679,186,114 - 79,220,302 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21685,853,611 - 85,887,787 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC6A3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.141,209,013 - 1,258,797 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl41,209,019 - 1,258,866 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605435,775,947 - 35,824,591 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc6a3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624751694,099 - 719,465 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624751694,165 - 720,287 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Slc6a3
1323 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:510
Count of miRNA genes:337
Interacting mature miRNAs:402
Transcripts:ENSMUST00000022100
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142331Bxs6_mBXSB/MpJ autoimmune nephritis 6 (mouse)Not determined4521044283744746Mouse
1301593Heal8_mwound healing/regeneration 8 (mouse)Not determined1368053999102054119Mouse
1300573Elsgp2_melevated serum gp70 2 (mouse)Not determined135061682884617027Mouse
10412109Bxs7_mBXSB/MpJ autoimmune nephritis 7 (mouse)Not determined134521044283744746Mouse
10412235Scgq5_mspontaneous crescentic glomerulonephritis QTL 5 (mouse)Not determined133606090896239162Mouse
4142314Tailaq3_mtail length adjusted QTL 3 (mouse)Not determined55720354112431103Mouse
1558850Sgp3_mserum gp70 production 3 (mouse)Not determined135647045676971314Mouse
1301445Listr2_mlisteriosis resistance 2 (mouse)Not determined1366744601100744746Mouse
4141992W6q16_mweight 6 weeks QTL 16 (mouse)Not determined55720354112431103Mouse
4142372Moo2_mmodifier of Odc2 (mouse)Not determinedX5031841184318559Mouse
15039353Nmrs35_mNAFLD-associated magnetic resonance shift 35 (mouse)134058825374588253Mouse
10412163Wra1_mwheel running activity 1 (mouse)Not determined135913260093132738Mouse
4142241Tailq3_mtail length QTL 3 (mouse)Not determined55720354112431103Mouse
1300941Skl6_mskeletal size (tail length) 6 (mouse)Not determined136425082198250945Mouse
14747007Mancz11_mmandible centroid size 11 (mouse)1370111284104111284Mouse
4140959W10q17_mweight 10 weeks QTL 17 (mouse)Not determined55720354112431103Mouse
1357553Cia28_mcollagen induced arthritis 28 (mouse)Not determined135662924996239162Mouse
1302073Pgct1_mprimordial germ cell tumor locus 1 (mouse)Not determined135382078387820897Mouse
1301949Skull20_mskull morphology 20 (mouse)Not determined136425082198250945Mouse
1300668Pas10_mpulmonary adenoma susceptibility 10 (mouse)Not determined134148904275489158Mouse
1357563Bmch6_mbone mechanical trait 6 (mouse)Not determined135538498089385140Mouse
10402414Sgp5_mserum gp70 production 5 (mouse)Not determined1356470456105422186Mouse
1301666Eae13_msusceptibility to experimental allergic encephalomyelitis 13 (mouse)Not determined135031841184318559Mouse
26884393Humsd7_mhumerus midshaft diameter 7, 16 week (mouse)13395000076048119Mouse
14696726Kidrq3_mkidney weight, right QTL 3 (mouse)1368217066102217066Mouse
4142147Mvwf4_mmodifier of von Willebrand factor 4 (mouse)Not determined20477612112898424Mouse
14746975Manh74_mmandible shape 74 (mouse)135247726986477269Mouse

Markers in Region
Slc6a3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map13C1UniSTS
cM Map1341.0UniSTS
PMC304098P2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381373,562,305 - 73,562,405UniSTSGRCm38
MGSCv371373,699,753 - 73,699,853UniSTSGRCm37
Celera1375,891,096 - 75,891,196UniSTS
Cytogenetic Map13C1UniSTS
cM Map1341.0UniSTS
D1Wox51  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381373,577,720 - 73,577,826UniSTSGRCm38
MGSCv371373,715,168 - 73,715,274UniSTSGRCm37
Celera1375,906,511 - 75,906,617UniSTS
Cytogenetic Map13C1UniSTS
cM Map1341.0UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000022100   ⟹   ENSMUSP00000022100
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1373,684,866 - 73,726,791 (+)Ensembl
GRCm38.p6 Ensembl1373,536,747 - 73,578,672 (+)Ensembl
RefSeq Acc Id: NM_010020   ⟹   NP_034150
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391373,684,866 - 73,726,791 (+)NCBI
GRCm381373,536,747 - 73,578,672 (+)NCBI
MGSCv371373,674,195 - 73,716,120 (+)RGD
Celera1375,865,546 - 75,907,463 (+)RGD
cM Map13 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006517083   ⟹   XP_006517146
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391373,684,270 - 73,726,791 (+)NCBI
GRCm381373,536,147 - 73,578,672 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006517084   ⟹   XP_006517147
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391373,684,863 - 73,718,071 (+)NCBI
GRCm381373,536,128 - 73,569,952 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017315377   ⟹   XP_017170866
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391373,684,848 - 73,719,519 (+)NCBI
GRCm381373,536,132 - 73,571,402 (+)NCBI
Sequence:
RefSeq Acc Id: NP_034150   ⟸   NM_010020
- UniProtKB: Q60719 (UniProtKB/Swiss-Prot),   Q9R1I2 (UniProtKB/Swiss-Prot),   Q61327 (UniProtKB/Swiss-Prot),   Q3UVW5 (UniProtKB/TrEMBL),   Q8C009 (UniProtKB/TrEMBL),   Q9JJ41 (UniProtKB/TrEMBL),   Q9R0X6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006517147   ⟸   XM_006517084
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006517146   ⟸   XM_006517083
- Peptide Label: isoform X1
- UniProtKB: Q3UVW5 (UniProtKB/TrEMBL),   Q8C009 (UniProtKB/TrEMBL),   Q9JJ41 (UniProtKB/TrEMBL),   Q9R0X6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017170866   ⟸   XM_017315377
- Peptide Label: isoform X2
- UniProtKB: Q9JJ41 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000022100   ⟸   ENSMUST00000022100

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q61327-F1-model_v2 AlphaFold Q61327 1-619 view protein structure

Promoters
RGD ID:8680870
Promoter ID:EPDNEW_M18430
Type:multiple initiation site
Name:Slc6a3_1
Description:Mus musculus solute carrier family 6 (neurotransmitter transporter,dopamine), member 3 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381373,536,803 - 73,536,863EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:94862 AgrOrtholog
Ensembl Genes ENSMUSG00000021609 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000022100 ENTREZGENE
  ENSMUST00000022100.7 UniProtKB/Swiss-Prot
InterPro Na/ntran_symport UniProtKB/Swiss-Prot, UniProtKB/TrEMBL