Rab3a (RAB3A, member RAS oncogene family) - Rat Genome Database

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Gene: Rab3a (RAB3A, member RAS oncogene family) Mus musculus
Analyze
Symbol: Rab3a
Name: RAB3A, member RAS oncogene family
RGD ID: 11212
MGI Page MGI
Description: Enables GTP-dependent protein binding activity and protein-macromolecule adaptor activity. Involved in several processes, including modulation of chemical synaptic transmission; secretion by cell; and synaptic vesicle clustering. Acts upstream of or within several processes, including chemical synaptic transmission; maintenance of presynaptic active zone structure; and synaptic vesicle maturation. Located in several cellular components, including cytoplasmic vesicle; presynaptic active zone; and terminal bouton. Is active in synaptic vesicle membrane. Is expressed in brain and inner ear. Orthologous to human RAB3A (RAB3A, member RAS oncogene family).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ras-related protein Rab-3A
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39871,207,258 - 71,211,276 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl871,207,328 - 71,211,323 (+)EnsemblGRCm39 Ensembl
GRCm38870,754,703 - 70,758,608 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl870,754,679 - 70,758,677 (+)EnsemblGRCm38mm10GRCm38
MGSCv37873,278,578 - 73,282,585 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36873,683,712 - 73,687,666 (+)NCBIMGSCv36mm8
Celera873,315,980 - 73,319,984 (+)NCBICelera
Cytogenetic Map8B3.3NCBI
cM Map834.15NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. MGD IEA MGD IEA
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Acetate supplementation modulates brain histone acetylation and decreases interleukin-1beta expression in a rat model of neuroinflammation. Soliman ML, etal., J Neuroinflammation. 2012 Mar 13;9:51.
9. Mechanisms of biphasic insulin-granule exocytosis - roles of the cytoskeleton, small GTPases and SNARE proteins. Wang Z and Thurmond DC, J Cell Sci. 2009 Apr 1;122(Pt 7):893-903.
Additional References at PubMed
PMID:7687127   PMID:7822236   PMID:7911226   PMID:9088571   PMID:9194562   PMID:9252190   PMID:9437855   PMID:9856469   PMID:9914469   PMID:10025402   PMID:10349636   PMID:10398417  
PMID:10407024   PMID:10707984   PMID:11042159   PMID:11056535   PMID:11076861   PMID:11182090   PMID:11359932   PMID:11431472   PMID:11517266   PMID:11598194   PMID:11773082   PMID:11856727  
PMID:11871104   PMID:12051743   PMID:12167638   PMID:12192047   PMID:12244319   PMID:12401793   PMID:12438138   PMID:12456815   PMID:12477932   PMID:12510060   PMID:12527452   PMID:12578829  
PMID:12590134   PMID:12937130   PMID:14610273   PMID:14722103   PMID:15066271   PMID:15078563   PMID:15099020   PMID:15146054   PMID:15159548   PMID:15217342   PMID:15265868   PMID:15269275  
PMID:15489334   PMID:15529118   PMID:15648052   PMID:15782199   PMID:15920476   PMID:15935055   PMID:15967982   PMID:16093251   PMID:16141072   PMID:16141073   PMID:16141272   PMID:16332269  
PMID:16436611   PMID:16512683   PMID:16585060   PMID:16631140   PMID:16704978   PMID:16734774   PMID:16782817   PMID:16923123   PMID:17114649   PMID:17124501   PMID:17579214   PMID:17637832  
PMID:17640821   PMID:18397381   PMID:18448650   PMID:18559336   PMID:18591190   PMID:18849981   PMID:19077034   PMID:19170188   PMID:19348946   PMID:19477153   PMID:19521500   PMID:19570198  
PMID:19578006   PMID:19723784   PMID:20338242   PMID:20392954   PMID:20716109   PMID:21128978   PMID:21262767   PMID:21349835   PMID:21389214   PMID:21435558   PMID:21532590   PMID:21645620  
PMID:21677750   PMID:21873635   PMID:22472623   PMID:22593061   PMID:22794259   PMID:23344955   PMID:23399968   PMID:23961995   PMID:24036110   PMID:24205339   PMID:24227741   PMID:24952961  
PMID:24965146   PMID:27325702   PMID:27423421   PMID:27507650   PMID:28671696   PMID:28706196   PMID:31651360   PMID:31679900   PMID:32312887   PMID:32325033   PMID:33542309   PMID:34180342  
PMID:34321999   PMID:34645086   PMID:36293380   PMID:36417873   PMID:36808153  


Genomics

Comparative Map Data
Rab3a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39871,207,258 - 71,211,276 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl871,207,328 - 71,211,323 (+)EnsemblGRCm39 Ensembl
GRCm38870,754,703 - 70,758,608 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl870,754,679 - 70,758,677 (+)EnsemblGRCm38mm10GRCm38
MGSCv37873,278,578 - 73,282,585 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36873,683,712 - 73,687,666 (+)NCBIMGSCv36mm8
Celera873,315,980 - 73,319,984 (+)NCBICelera
Cytogenetic Map8B3.3NCBI
cM Map834.15NCBI
RAB3A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381918,196,784 - 18,204,042 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1918,196,784 - 18,204,042 (-)EnsemblGRCh38hg38GRCh38
GRCh371918,307,594 - 18,314,852 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361918,168,611 - 18,175,839 (-)NCBINCBI36Build 36hg18NCBI36
Build 341918,168,610 - 18,175,839NCBI
Celera1918,209,348 - 18,216,613 (-)NCBICelera
Cytogenetic Map19p13.11NCBI
HuRef1917,871,059 - 17,878,307 (-)NCBIHuRef
CHM1_11918,307,151 - 18,314,427 (-)NCBICHM1_1
T2T-CHM13v2.01918,330,909 - 18,338,143 (-)NCBIT2T-CHM13v2.0
Rab3a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81618,718,164 - 18,722,273 (-)NCBIGRCr8
mRatBN7.21618,684,185 - 18,688,297 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1618,684,188 - 18,688,336 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1618,726,559 - 18,730,675 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01619,859,239 - 19,863,348 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01618,779,503 - 18,783,622 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01620,435,098 - 20,439,206 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1620,435,101 - 20,439,206 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01620,292,166 - 20,296,274 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41619,189,765 - 19,193,874 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11619,189,765 - 19,193,872 (-)NCBI
Celera1618,876,401 - 18,880,512 (-)NCBICelera
Cytogenetic Map16p14NCBI
Rab3a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555243,221,366 - 3,224,376 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555243,220,108 - 3,224,376 (+)NCBIChiLan1.0ChiLan1.0
RAB3A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22023,054,186 - 23,061,417 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11922,062,526 - 22,069,753 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01917,672,661 - 17,679,541 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11918,649,166 - 18,656,768 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1918,649,166 - 18,656,768 (-)Ensemblpanpan1.1panPan2
RAB3A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12044,796,740 - 44,802,224 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2044,796,895 - 44,801,692 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2044,710,693 - 44,716,183 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02045,282,514 - 45,288,006 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2045,282,528 - 45,287,983 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12044,519,685 - 44,525,177 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02044,930,125 - 44,935,626 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02045,205,632 - 45,211,124 (+)NCBIUU_Cfam_GSD_1.0
Rab3a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118203,441,225 - 203,447,398 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365962,989,804 - 2,998,305 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365962,990,367 - 2,995,935 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAB3A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl259,603,117 - 59,609,767 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1259,603,090 - 59,609,773 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2259,142,410 - 59,149,077 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RAB3A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1616,671,388 - 16,678,780 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl616,670,431 - 16,678,644 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660742,699,847 - 2,707,085 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rab3a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249081,530,312 - 1,536,129 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249081,532,857 - 1,537,159 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rab3a
231 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:1360
Count of miRNA genes:410
Interacting mature miRNAs:456
Transcripts:ENSMUST00000034301, ENSMUST00000110090, ENSMUST00000110092, ENSMUST00000110093, ENSMUST00000130468, ENSMUST00000143118
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558870Eae36_mexperimental allergic encephalomyelitis susceptibility 36 (mouse)Not determined81477316071498244Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined866326836100326976Mouse
4141437W10q14_mweight 10 weeks QTL 14 (mouse)Not determined3250657271740637Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83663015493455280Mouse
1301717Adip4_madiposity 4 (mouse)Not determined84809006482090180Mouse
1357715Alaa3_malopecia areata 3 (mouse)Not determined84924559183245673Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85892810792928107Mouse
14746987Manh64_mmandible shape 64 (mouse)85050595884505958Mouse
4141172W6q9_mweight 6 weeks QTL 9 (mouse)Not determined3250657271740637Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined835109930115563747Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined866084397100084549Mouse
10766453Char11_mP. chabaudi malaria resistance QTL 11 (mouse)84809006482090180Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85474046188740637Mouse
1301441Skull11_mskull morphology 11 (mouse)Not determined84819016882190288Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85515925889159407Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined871032003105032123Mouse
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832506572117965439Mouse
4140966Egq12_mearly growth QTL 12 (mouse)Not determined3250657271740637Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6418673698186736Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86466617698666325Mouse
14747005Mancz7_mmandible centroid size 7 (mouse)85050595884505958Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837867154110326632Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85913640493136404Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85629887290298872Mouse
10766466Char12_mP. chabaudi malaria resistance QTL 12 (mouse)86872247983326976Mouse
1357811Orq3_movulation rate QTL 3 (mouse)Not determined83250657271740637Mouse
11039503Ccc4_mcolitis susceptibility in the Collaborative Cross 4 (mouse)86517423778002730Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86151347995513605Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)84016229795416226Mouse
14700686Civq3_mcerebral infarct volume QTL 3 (mouse)85233484386334843Mouse
4142283Imraq2_mimmune response to AAV2 QTL 2 (mouse)Not determined871032003105032123Mouse
1301544Iba3_minduction of brown adipocytes 3 (mouse)Not determined84474791478748059Mouse

Markers in Region
RH133798  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38870,758,452 - 70,758,608UniSTSGRCm38
MGSCv37873,282,351 - 73,282,507UniSTSGRCm37
Celera873,319,750 - 73,319,906UniSTS
Cytogenetic Map8B3.3UniSTS
X72966  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38870,758,837 - 70,758,949UniSTSGRCm38
MGSCv37873,282,736 - 73,282,848UniSTSGRCm37
Celera873,320,135 - 73,320,247UniSTS
Cytogenetic Map8B3.3UniSTS
Whitehead/MRC_RH8744.22UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001166399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001328047 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001378892 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001378893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_009001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB232587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC162446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK005307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK005362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK158727 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC018451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC053519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU843202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY097011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY251171 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY258862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CAAA01070179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CX238545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X72966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000034301   ⟹   ENSMUSP00000034301
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl871,207,360 - 71,211,281 (+)Ensembl
GRCm38.p6 Ensembl870,754,711 - 70,758,635 (+)Ensembl
Ensembl Acc Id: ENSMUST00000110090   ⟹   ENSMUSP00000105717
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl871,207,373 - 71,211,281 (+)Ensembl
GRCm38.p6 Ensembl870,754,724 - 70,758,635 (+)Ensembl
Ensembl Acc Id: ENSMUST00000110092   ⟹   ENSMUSP00000105719
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl871,208,158 - 71,211,281 (+)Ensembl
GRCm38.p6 Ensembl870,755,510 - 70,758,635 (+)Ensembl
Ensembl Acc Id: ENSMUST00000110093   ⟹   ENSMUSP00000105720
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl871,207,328 - 71,211,323 (+)Ensembl
GRCm38.p6 Ensembl870,754,679 - 70,758,677 (+)Ensembl
Ensembl Acc Id: ENSMUST00000130468
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl871,209,104 - 71,210,346 (+)Ensembl
GRCm38.p6 Ensembl870,756,457 - 70,757,700 (+)Ensembl
Ensembl Acc Id: ENSMUST00000143118   ⟹   ENSMUSP00000123384
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl871,207,352 - 71,209,908 (+)Ensembl
GRCm38.p6 Ensembl870,754,703 - 70,757,262 (+)Ensembl
RefSeq Acc Id: NM_001166399   ⟹   NP_001159871
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39871,207,352 - 71,211,254 (+)NCBI
GRCm38870,754,703 - 70,758,608 (+)NCBI
MGSCv37873,278,578 - 73,282,585 (+)RGD
Celera873,315,980 - 73,319,984 (+)RGD
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001328047   ⟹   NP_001314976
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39871,207,352 - 71,211,254 (+)NCBI
GRCm38870,754,703 - 70,758,608 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001378892   ⟹   NP_001365821
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39871,207,750 - 71,211,254 (+)NCBI
GRCm38870,755,102 - 70,758,608 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001378893   ⟹   NP_001365822
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39871,207,750 - 71,211,254 (+)NCBI
GRCm38870,755,102 - 70,758,608 (+)NCBI
Sequence:
RefSeq Acc Id: NM_009001   ⟹   NP_033027
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39871,207,352 - 71,211,254 (+)NCBI
GRCm38870,754,703 - 70,758,608 (+)NCBI
MGSCv37873,278,578 - 73,282,585 (+)RGD
Celera873,315,980 - 73,319,984 (+)RGD
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_036153836   ⟹   XP_036009729
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39871,207,258 - 71,211,276 (+)NCBI
Sequence:
RefSeq Acc Id: NP_033027   ⟸   NM_009001
- UniProtKB: Q3TSL4 (UniProtKB/Swiss-Prot),   P05713 (UniProtKB/Swiss-Prot),   P63011 (UniProtKB/Swiss-Prot),   Q0PD63 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001159871   ⟸   NM_001166399
- UniProtKB: Q3TSL4 (UniProtKB/Swiss-Prot),   P05713 (UniProtKB/Swiss-Prot),   P63011 (UniProtKB/Swiss-Prot),   Q0PD63 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001314976   ⟸   NM_001328047
- UniProtKB: Q3TSL4 (UniProtKB/Swiss-Prot),   P05713 (UniProtKB/Swiss-Prot),   P63011 (UniProtKB/Swiss-Prot),   Q0PD63 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001365822   ⟸   NM_001378893
- UniProtKB: P63011 (UniProtKB/Swiss-Prot),   Q3TSL4 (UniProtKB/Swiss-Prot),   P05713 (UniProtKB/Swiss-Prot),   Q0PD63 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001365821   ⟸   NM_001378892
- UniProtKB: P63011 (UniProtKB/Swiss-Prot),   Q3TSL4 (UniProtKB/Swiss-Prot),   P05713 (UniProtKB/Swiss-Prot),   Q0PD63 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000105717   ⟸   ENSMUST00000110090
Ensembl Acc Id: ENSMUSP00000105719   ⟸   ENSMUST00000110092
Ensembl Acc Id: ENSMUSP00000105720   ⟸   ENSMUST00000110093
Ensembl Acc Id: ENSMUSP00000123384   ⟸   ENSMUST00000143118
Ensembl Acc Id: ENSMUSP00000034301   ⟸   ENSMUST00000034301
RefSeq Acc Id: XP_036009729   ⟸   XM_036153836
- Peptide Label: isoform X1
- UniProtKB: P63011 (UniProtKB/Swiss-Prot),   Q3TSL4 (UniProtKB/Swiss-Prot),   P05713 (UniProtKB/Swiss-Prot),   Q0PD63 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P63011-F1-model_v2 AlphaFold P63011 1-220 view protein structure

Promoters
RGD ID:8667341
Promoter ID:EPDNEW_M11702
Type:initiation region
Name:Rab3a_1
Description:Mus musculus RAB3A, member RAS oncogene family , transcript variant3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38870,754,712 - 70,754,772EPDNEW
RGD ID:6843654
Promoter ID:MM_KWN:54736
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day6,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000110090,   NM_001166399,   NM_009001,   OTTMUST00000053432,   UC009MBJ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36873,278,246 - 73,278,746 (+)MPROMDB
RGD ID:6843657
Promoter ID:MM_KWN:54737
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B6,   Spleen
Transcripts:NM_009001_RAB3A,   OTTMUST00000041106,   OTTMUST00000053433
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36873,278,416 - 73,280,362 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:97843 AgrOrtholog
Ensembl Genes ENSMUSG00000031840 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000034301 ENTREZGENE
  ENSMUST00000034301.12 UniProtKB/Swiss-Prot
  ENSMUST00000110090 ENTREZGENE
  ENSMUST00000110090.8 UniProtKB/Swiss-Prot
  ENSMUST00000110092.6 UniProtKB/Swiss-Prot
  ENSMUST00000110093 ENTREZGENE
  ENSMUST00000110093.9 UniProtKB/Swiss-Prot
  ENSMUST00000143118.3 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rab3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Small_GTP-bd_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Small_GTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Small_GTPase_Rab UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:19339 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:97843 ENTREZGENE
NCBI Gene 19339 ENTREZGENE
PANTHER LD44762P UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ras UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rab3a PhenoGen
PRINTS RASTRNSFRMNG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE RAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
SMART RAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RHO UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt D3YZP5_MOUSE UniProtKB/TrEMBL
  P05713 ENTREZGENE
  P63011 ENTREZGENE
  Q05D37_MOUSE UniProtKB/TrEMBL
  Q0PD63 ENTREZGENE, UniProtKB/TrEMBL
  Q3TSL4 ENTREZGENE
  RAB3A_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary P05713 UniProtKB/Swiss-Prot
  Q3TSL4 UniProtKB/Swiss-Prot