Lamp2 (lysosomal-associated membrane protein 2) - Rat Genome Database

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Gene: Lamp2 (lysosomal-associated membrane protein 2) Mus musculus
Analyze
Symbol: Lamp2
Name: lysosomal-associated membrane protein 2
RGD ID: 10857
MGI Page MGI
Description: Enables protein domain specific binding activity. Involved in several processes, including autophagosome maturation; protein stabilization; and protein targeting to lysosome involved in chaperone-mediated autophagy. Acts upstream of or within muscle cell cellular homeostasis. Located in bounding membrane of organelle. Is active in lysosome. Is expressed in several structures, including central nervous system; egg cylinder; heart valve; oocyte; and sensory organ. Used to study Danon disease. Human ortholog(s) of this gene implicated in Danon disease and hypertrophic cardiomyopathy. Orthologous to human LAMP2 (lysosomal associated membrane protein 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: CD107 antigen-like family member B; CD107b; Lam; Lamp; Lamp II; Lamp-2; Lamp-2a; Lamp-2b; Lamp-2c; LGP-B; lysosomal membrane glycoprotein 2; lysosomal membrane glycoprotein type B; lysosome-associated membrane glycoprotein 2; lysosome-associated membrane protein 2; lysosome-associated membrane protein-2; Mac; Mac3
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X37,488,524 - 37,545,337 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX37,490,234 - 37,545,331 (-)EnsemblGRCm39 Ensembl
GRCm38X38,399,647 - 38,456,460 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX38,401,357 - 38,456,454 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X35,758,241 - 35,809,632 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X34,649,691 - 34,701,082 (-)NCBIMGSCv36mm8
CeleraX26,051,798 - 26,103,095 (-)NCBICelera
Cytogenetic MapXA3.3NCBI
cM MapX22.67NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-pilocarpine  (ISO)
(1->4)-beta-D-glucan  (EXP)
(S)-nicotine  (ISO)
1,2-dimethylhydrazine  (EXP)
1-chloro-2,4-dinitrobenzene  (ISO)
1-naphthyl isothiocyanate  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-bromohexadecanoic acid  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-methyladenine  (ISO)
3H-1,2-dithiole-3-thione  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (EXP)
6-propyl-2-thiouracil  (ISO)
aflatoxin B1  (EXP,ISO)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (ISO)
aloxistatin  (ISO)
alpha,alpha-trehalose  (EXP,ISO)
amitrole  (ISO)
ammonium chloride  (ISO)
amphetamine  (ISO)
arachidonic acid  (EXP)
aristolochic acid A  (ISO)
Aroclor 1254  (EXP)
arsenite(3-)  (ISO)
atrazine  (ISO)
beauvericin  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bicalutamide  (ISO)
bilirubin IXalpha  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
Brusatol  (ISO)
butanal  (ISO)
cadmium atom  (EXP,ISO)
cadmium dichloride  (EXP,ISO)
calciol  (EXP)
carbamazepine  (ISO)
carbon nanotube  (EXP)
carnosic acid  (EXP)
chloroquine  (ISO)
cisplatin  (EXP)
clofibrate  (EXP)
clofibric acid  (ISO)
cobalt dichloride  (ISO)
cocaine  (ISO)
coenzyme Q10  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) chloride  (EXP)
corosolic acid  (EXP,ISO)
cyclosporin A  (EXP,ISO)
D-glucose  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP)
dicrotophos  (ISO)
Didecyldimethylammonium  (ISO)
dimethyl fumarate  (EXP)
dioxygen  (ISO)
diuron  (ISO)
dorsomorphin  (ISO)
doxorubicin  (EXP,ISO)
enniatin  (ISO)
entinostat  (ISO)
enzyme inhibitor  (ISO)
ethambutol  (ISO)
ethanol  (EXP,ISO)
ferric oxide  (EXP)
folic acid  (EXP)
fulvestrant  (ISO)
genistein  (ISO)
gentamycin  (ISO)
glucose  (ISO)
hydrogen peroxide  (EXP)
ivermectin  (ISO)
lanthanum trichloride  (ISO)
lead diacetate  (EXP)
lead nitrate  (EXP)
lead(0)  (EXP,ISO)
lipopolysaccharide  (EXP)
manganese atom  (EXP)
manganese(0)  (EXP)
manganese(II) chloride  (EXP)
melatonin  (ISO)
mercury dibromide  (ISO)
methamphetamine  (EXP,ISO)
methylisothiazolinone  (ISO)
methylmercury chloride  (ISO)
methylphenidate  (ISO)
N,N,N',N'-tetrakis(2-pyridylmethyl)ethylenediamine  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (ISO)
nicotine  (ISO)
Nivalenol  (EXP)
ozone  (ISO)
paclitaxel  (ISO)
panobinostat  (ISO)
paracetamol  (ISO)
paraquat  (EXP)
pepstatin A  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
potassium dichromate  (EXP)
Propiverine  (ISO)
pyrogallol  (EXP)
pyrroloquinoline quinone  (ISO)
quizartinib  (ISO)
rimonabant  (EXP)
rotenone  (EXP,ISO)
sarin  (ISO)
SB 431542  (ISO)
silver atom  (EXP)
silver(0)  (EXP)
sodium arsenite  (ISO)
sodium fluoride  (EXP)
Soman  (ISO)
streptozocin  (ISO)
sulfadimethoxine  (ISO)
sulforaphane  (EXP,ISO)
sunitinib  (ISO)
swainsonine  (ISO)
tamoxifen  (EXP)
tetrachloromethane  (EXP,ISO)
thioacetamide  (ISO)
thiophenes  (ISO)
titanium dioxide  (EXP)
trichostatin A  (ISO)
trifloxystrobin  (ISO)
triphenyl phosphate  (ISO)
triptonide  (EXP)
troglitazone  (EXP)
uranium atom  (ISO)
valproic acid  (ISO)
vitamin E  (ISO)
zidovudine  (ISO)
zinc oxide  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal atrioventricular bundle morphology  (IAGP)
abnormal atrioventricular node morphology  (IAGP)
abnormal autophagy  (IAGP)
abnormal cardiovascular system physiology  (IAGP)
abnormal cell physiology  (IAGP)
abnormal cellular respiration  (IAGP)
abnormal circulating amino acid level  (IAGP)
abnormal craniofacial morphology  (IAGP)
abnormal enzyme/coenzyme activity  (IAGP)
abnormal glucose homeostasis  (IAGP)
abnormal jaw morphology  (IAGP)
abnormal lipid homeostasis  (IAGP)
abnormal liver physiology  (IAGP)
abnormal lysosome morphology  (IAGP)
abnormal mitochondrial morphology  (IAGP)
abnormal mitophagy  (IAGP)
abnormal myocardial fiber morphology  (IAGP)
abnormal myocardial fiber physiology  (IAGP)
abnormal sinoatrial node conduction  (IAGP)
abnormal thymus morphology  (IAGP)
absent vibrissae  (IAGP)
atrioventricular block  (IAGP)
cardiac fibrosis  (IAGP)
cardiac hypertrophy  (IAGP)
cardiomyopathy  (IAGP)
decreased birth body size  (IAGP)
decreased body weight  (IAGP)
decreased brown fat cell lipid droplet size  (IAGP)
decreased cardiac muscle contractility  (IAGP)
decreased fasting circulating glucose level  (IAGP)
decreased forebrain size  (IAGP)
decreased gonadal fat pad weight  (IAGP)
decreased hepatic glucose production  (IAGP)
decreased litter size  (IAGP)
decreased liver function  (IAGP)
decreased liver glycogen level  (IAGP)
decreased locomotor activity  (IAGP)
decreased percent body fat/body weight  (IAGP)
decreased white fat cell lipid droplet size  (IAGP)
dilated heart left ventricle  (IAGP)
enhanced behavioral response to xenobiotic  (IAGP)
enlarged liver  (IAGP)
heart left ventricle hypertrophy  (IAGP)
hepatic steatosis  (IAGP)
impaired autophagy  (IAGP)
improved glucose tolerance  (IAGP)
increased carbon dioxide production  (IAGP)
increased cardiac muscle glycogen level  (IAGP)
increased cellular glucose import  (IAGP)
increased circulating alanine transaminase level  (IAGP)
increased circulating troponin T level  (IAGP)
increased energy expenditure  (IAGP)
increased heart left ventricle wall thickness  (IAGP)
increased heart weight  (IAGP)
increased hepatocyte apoptosis  (IAGP)
increased liver triglyceride level  (IAGP)
increased liver weight  (IAGP)
increased myocardial fiber size  (IAGP)
increased oxygen consumption  (IAGP)
increased respiratory quotient  (IAGP)
increased susceptibility to weight gain  (IAGP)
intermingled spleen red and white pulp  (IAGP)
irregular heartbeat  (IAGP)
micrognathia  (IAGP)
neonatal lethality, incomplete penetrance  (IAGP)
pale liver  (IAGP)
premature death  (IAGP)
prenatal lethality, complete penetrance  (IAGP)
prolonged PR interval  (IAGP)
short mandible  (IAGP)
short maxilla  (IAGP)
shortened head  (IAGP)
weight loss  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Noggin attenuates cerulein-induced acute pancreatitis and impaired autophagy. Cao Y, etal., Pancreas. 2013 Mar;42(2):301-7. doi: 10.1097/MPA.0b013e31825b9f2c.
2. Effect of autophagy on allodynia, hyperalgesia and astrocyte activation in a rat model of neuropathic pain. Chen H, etal., Int J Mol Med. 2018 Jul 6. doi: 10.3892/ijmm.2018.3763.
3. Chaperone-mediated autophagy: roles in disease and aging. Cuervo AM and Wong E, Cell Res. 2014 Jan;24(1):92-104. doi: 10.1038/cr.2013.153. Epub 2013 Nov 26.
4. Characterization and cloning of lgp110, a lysosomal membrane glycoprotein from mouse and rat cells. Granger BL, etal., J Biol Chem 1990 Jul 15;265(20):12036-43.
5. Endolyn is a mucin-like type I membrane protein targeted to lysosomes by its cytoplasmic tail. Ihrke G, etal., Biochem J 2000 Jan 15;345 Pt 2:287-96.
6. Autophagy signaling in skeletal muscle of infarcted rats. Jannig PR, etal., PLoS One. 2014 Jan 10;9(1):e85820. doi: 10.1371/journal.pone.0085820. eCollection 2014.
7. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
8. Characterisation of Lamp2-deficient rats for potential new animal model of Danon disease. Ma S, etal., Sci Rep. 2018 May 2;8(1):6932. doi: 10.1038/s41598-018-24351-w.
9. Mouse K-glypican gene, gpc4, maps to chromosome X. Matsuki Y, etal., Genomics 1998 Dec 1;54(2):358-9.
10. Overview of macroautophagy regulation in mammalian cells. Mehrpour M, etal., Cell Res. 2010 Jul;20(7):748-62. Epub 2010 Jun 15.
11. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
12. MGDs mouse GO annotations MGD data from the GO Consortium
13. MGD IEA MGD IEA
14. Large-scale screen for genes controlling mammalian embryogenesis, using high-throughput gene expression analysis in mouse embryos. Neidhardt L, etal., Mech Dev 2000 Nov;98(1-2):77-94.
15. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
16. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
17. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
18. Mouse MP Annotation Import Pipeline RGD automated import pipeline
19. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
20. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
21. Mammalian late vacuole protein sorting orthologues participate in early endosomal fusion and interact with the cytoskeleton. Richardson SC, etal., Mol Biol Cell 2004 Mar;15(3):1197-210. Epub 2003 Dec 10.
22. Hepatic interferon regulatory factor 8 expression mediates liver ischemia/reperfusion injury in mice. Shi G, etal., Biochem Pharmacol. 2021 Oct;192:114728. doi: 10.1016/j.bcp.2021.114728. Epub 2021 Aug 13.
23. A Critical Evaluation of Liver Pathology in Humans with Danon Disease and Experimental Correlates in a Rat Model of LAMP-2 Deficiency. Wang L, etal., Clin Rev Allergy Immunol. 2017 Aug;53(1):105-116. doi: 10.1007/s12016-017-8598-3.
24. Chaperone mediated autophagy to the rescue: A new-fangled target for the treatment of neurodegenerative diseases. Xilouri M and Stefanis L, Mol Cell Neurosci. 2015 May;66(Pt A):29-36. doi: 10.1016/j.mcn.2015.01.003. Epub 2015 Feb 25.
25. Effects of DHA on Hippocampal Autophagy and Lysosome Function After Traumatic Brain Injury. Yin Y, etal., Mol Neurobiol. 2018 Mar;55(3):2454-2470. doi: 10.1007/s12035-017-0504-8. Epub 2017 Apr 1.
Additional References at PubMed
PMID:1426645   PMID:2318880   PMID:7546292   PMID:8889548   PMID:8983177   PMID:9344676   PMID:9399579   PMID:9507200   PMID:9670047   PMID:10349636   PMID:10922068   PMID:10972293  
PMID:11042159   PMID:11076861   PMID:11159184   PMID:11427988   PMID:12133826   PMID:12221139   PMID:12398843   PMID:12477932   PMID:12520002   PMID:12536145   PMID:12775715   PMID:12904583  
PMID:14557411   PMID:14610273   PMID:15121881   PMID:15155767   PMID:15229288   PMID:15782199   PMID:15792868   PMID:15985464   PMID:16093322   PMID:16141072   PMID:16141073   PMID:16157679  
PMID:16217705   PMID:16399794   PMID:16543368   PMID:16602821   PMID:16917501   PMID:17077144   PMID:17182866   PMID:17185018   PMID:17245426   PMID:17284523   PMID:17287360   PMID:17506821  
PMID:17656671   PMID:18022370   PMID:18097049   PMID:18385133   PMID:18550537   PMID:18579532   PMID:18606643   PMID:18644871   PMID:18701486   PMID:19246570   PMID:19549681   PMID:19710174  
PMID:19929948   PMID:20060297   PMID:20551175   PMID:20561595   PMID:20656885   PMID:20797626   PMID:21194361   PMID:21267068   PMID:21337463   PMID:21421825   PMID:21677750   PMID:21873635  
PMID:21896273   PMID:22592897   PMID:22641697   PMID:22698281   PMID:22990867   PMID:23063877   PMID:23071096   PMID:23093945   PMID:23213461   PMID:23334579   PMID:23554936   PMID:23630012  
PMID:23747342   PMID:24334765   PMID:24499815   PMID:24576489   PMID:24789143   PMID:24990151   PMID:25043815   PMID:25063677   PMID:25246127   PMID:25263126   PMID:25327288   PMID:25586965  
PMID:25620427   PMID:25637286   PMID:25653352   PMID:25762570   PMID:25915474   PMID:25961502   PMID:25998250   PMID:26203154   PMID:26267271   PMID:26271596   PMID:26383973   PMID:26693174  
PMID:26902588   PMID:27019864   PMID:27046251   PMID:27628032   PMID:27997827   PMID:28410006   PMID:28465352   PMID:28504966   PMID:28526246   PMID:28586379   PMID:29158485   PMID:29176575  
PMID:29463847   PMID:29794026   PMID:29950142   PMID:30048497   PMID:30068868   PMID:30550785   PMID:30818059   PMID:30842444   PMID:31059511   PMID:31308417   PMID:31564413   PMID:31699817  
PMID:32188720   PMID:32233738   PMID:32325033   PMID:32414917   PMID:32496646   PMID:32521258   PMID:32854285   PMID:32855403   PMID:33087696   PMID:33239172   PMID:33442062   PMID:33462112  
PMID:33682352   PMID:33781848   PMID:33849387   PMID:33854069   PMID:33891876   PMID:33966596   PMID:33970775   PMID:34128834   PMID:34284164   PMID:34321999   PMID:34459252   PMID:34498712  
PMID:34588579   PMID:34704457   PMID:34876687   PMID:34982109   PMID:35047503   PMID:35210514   PMID:35364055   PMID:35394837   PMID:35535798   PMID:35908066   PMID:35948619   PMID:36027926  
PMID:36871220   PMID:36979337   PMID:37162558   PMID:37315291   PMID:37596294   PMID:37658156   PMID:37839992   PMID:38060380   PMID:38103552  


Genomics

Comparative Map Data
Lamp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X37,488,524 - 37,545,337 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX37,490,234 - 37,545,331 (-)EnsemblGRCm39 Ensembl
GRCm38X38,399,647 - 38,456,460 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX38,401,357 - 38,456,454 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X35,758,241 - 35,809,632 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X34,649,691 - 34,701,082 (-)NCBIMGSCv36mm8
CeleraX26,051,798 - 26,103,095 (-)NCBICelera
Cytogenetic MapXA3.3NCBI
cM MapX22.67NCBI
LAMP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X120,426,148 - 120,469,349 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX120,426,148 - 120,469,365 (-)EnsemblGRCh38hg38GRCh38
GRCh37X119,560,003 - 119,603,204 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X119,448,709 - 119,487,189 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X119,352,246 - 119,385,043NCBI
CeleraX120,024,817 - 120,068,016 (-)NCBICelera
Cytogenetic MapXq24NCBI
HuRefX109,011,091 - 109,054,565 (-)NCBIHuRef
CHM1_1X119,471,636 - 119,514,850 (-)NCBICHM1_1
T2T-CHM13v2.0X118,801,613 - 118,844,815 (-)NCBIT2T-CHM13v2.0
Lamp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X122,038,734 - 122,087,745 (-)NCBIGRCr8
mRatBN7.2X117,173,097 - 117,222,090 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX117,057,606 - 117,260,522 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX119,276,896 - 119,320,477 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X122,845,901 - 122,889,485 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X120,391,759 - 120,435,367 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X124,722,628 - 124,766,079 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX124,722,628 - 124,766,044 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X124,809,053 - 124,852,509 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X6,908,285 - 6,951,772 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X6,913,840 - 6,957,328 (+)NCBI
CeleraX116,392,499 - 116,436,287 (-)NCBICelera
Cytogenetic MapXq35NCBI
Lamp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555721,422,981 - 1,462,622 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555721,423,048 - 1,464,443 (+)NCBIChiLan1.0ChiLan1.0
LAMP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X119,975,376 - 120,018,805 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X119,978,980 - 120,022,420 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X109,700,185 - 109,743,579 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X119,886,982 - 119,929,896 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX119,886,982 - 119,929,896 (-)Ensemblpanpan1.1panPan2
LAMP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X92,405,946 - 92,444,527 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX92,407,950 - 92,444,765 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX78,437,137 - 78,476,066 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X94,152,123 - 94,191,053 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX94,151,835 - 94,191,301 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X91,601,151 - 91,640,080 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X93,364,000 - 93,402,925 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X93,138,811 - 93,177,755 (-)NCBIUU_Cfam_GSD_1.0
Lamp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X91,364,734 - 91,431,269 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364799,584,221 - 9,610,420 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364799,584,221 - 9,622,330 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LAMP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX98,556,710 - 98,623,940 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X98,586,718 - 98,623,939 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X112,841,525 - 112,883,411 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LAMP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366606533,136,533 - 33,179,483 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lamp2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624931298,328 - 343,915 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624931297,864 - 343,314 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Lamp2
529 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1924
Count of miRNA genes:775
Interacting mature miRNAs:1008
Transcripts:ENSMUST00000016678, ENSMUST00000061755, ENSMUST00000074913, ENSMUST00000136817, ENSMUST00000144663
Prediction methods:Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13208553Wght11_mweight 11 (mouse)X1186623959045360Mouse
12738418Lfibq12_mliver fibrosis QTL 12 (mouse)X2572817443635700Mouse
27226750Femd9_mfemur midshaft diameter 9, 10 week (mouse)X3333746355845360Mouse
27226780Femd12_mfemur midshaft diameter 12, 16 week (mouse)X3466365356845360Mouse
13208557Lgth13_mbody length 13 (mouse)X1186623959045360Mouse
1558721Bw1_mbody weight QTL 1 (mouse)Not determinedX2060678347179225Mouse
1301551Spha1_msperm head anomaly 1 (mouse)Not determinedX1026622539921652Mouse
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
13208567Bmiq12_mbody mass index QTL 12 (mouse)X3526365377043606Mouse

Markers in Region
D10Mit157.2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6D1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map18E2UniSTS
Cytogenetic Map4C3UniSTS
Cytogenetic Map7B2UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map14E2.2UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map6C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map17A1UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map8C1UniSTS
Cytogenetic Map18A2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8E2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map18B1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map14C2UniSTS
Cytogenetic Map6A1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map13D2.1UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map17E3UniSTS
Cytogenetic Map11B3UniSTS
Cytogenetic Map1H4UniSTS
Cytogenetic Map6A3UniSTS
Cytogenetic Map5E4-E5UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map13DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map14D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic MapXDUniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map1H2.3UniSTS
Cytogenetic Map7A2UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map15D2UniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map16B2UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map1C4UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9F3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map9A4UniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map1A5UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map6G1UniSTS
Cytogenetic MapXA2UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map9BUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map7F1UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map10A4UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map18A1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map1C2UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map1BUniSTS
Cytogenetic Map17A3.1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map4B1UniSTS
Cytogenetic Map15A2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic Map4A3UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map8A1UniSTS
Cytogenetic Map8A1.1UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map10B1UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map10A1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map4A1UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map17CUniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map5E3UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map14C1UniSTS
Cytogenetic Map14E5UniSTS
Cytogenetic Map10CUniSTS
Cytogenetic Map18B2UniSTS
Cytogenetic Map2F1UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map17A2UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17B2UniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map13C3UniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map13C1UniSTS
Cytogenetic Map9E3.1UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXE3UniSTS
Cytogenetic Map4C4UniSTS
Cytogenetic Map3E3UniSTS
Cytogenetic Map11A4UniSTS
Cytogenetic Map4C5UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map7E1UniSTS
Cytogenetic Map5D-E1UniSTS
Cytogenetic Map5B3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map5A2UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map17E4UniSTS
Cytogenetic Map1G2UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map4D2.1UniSTS
Cytogenetic Map4A5UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map1E3-E4UniSTS
Cytogenetic Map9F1-F3UniSTS
Cytogenetic Map1C1.1UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map12A2UniSTS
Cytogenetic Map17A3-BUniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map14A3UniSTS
Cytogenetic Map5G1.1UniSTS
Cytogenetic MapXF2-F4UniSTS
Cytogenetic Map7D2UniSTS
Cytogenetic Map2F3UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map9F1-F2UniSTS
Cytogenetic Map13A3.2UniSTS
Cytogenetic Map10A2UniSTS
Cytogenetic Map1C1UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map12D3UniSTS
Cytogenetic Map1A3-A5UniSTS
Cytogenetic Map2A2UniSTS
Cytogenetic Map3A1UniSTS
Cytogenetic MapXA3.3UniSTS
Cytogenetic Map16A-B1UniSTS
Cytogenetic Map1D2.3UniSTS
Cytogenetic Map6B2.3UniSTS
Cytogenetic Map2G3UniSTS
Cytogenetic MapXA2-A3.1UniSTS
Cytogenetic Map9A5.3UniSTS
Cytogenetic Map14A2-BUniSTS
Cytogenetic Map8E1-E2UniSTS
Cytogenetic Map8A3UniSTS
Cytogenetic Map1G3-H1UniSTS
Cytogenetic Map8B3-C1UniSTS
Cytogenetic Map19C1UniSTS
Cytogenetic Map8C5UniSTS
Cytogenetic Map8A4UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map14E4UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic MapXF5UniSTS
cM Map1040.0UniSTS
Whitehead Genetic1033.9UniSTS
Lamp2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X38,440,199 - 38,440,539UniSTSGRCm38
MGSCv37X35,793,376 - 35,793,716UniSTSGRCm37
CeleraX26,086,839 - 26,087,179UniSTS
Cytogenetic MapXA3.3UniSTS
cM MapX13.0UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001017959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001290485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_010685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_152733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK012149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK032974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK048174 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK051989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK078193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK080234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK088804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK128946 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK136550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK139871 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK189254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL513356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC138718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC138723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ176100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY283193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  J05287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M32017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M32018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000016678   ⟹   ENSMUSP00000016678
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX37,493,939 - 37,545,331 (-)Ensembl
GRCm38.p6 EnsemblX38,405,062 - 38,456,454 (-)Ensembl
RefSeq Acc Id: ENSMUST00000061755   ⟹   ENSMUSP00000052283
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX37,508,384 - 37,545,331 (-)Ensembl
GRCm38.p6 EnsemblX38,419,507 - 38,456,454 (-)Ensembl
RefSeq Acc Id: ENSMUST00000074913   ⟹   ENSMUSP00000074448
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX37,490,234 - 37,545,331 (-)Ensembl
GRCm38.p6 EnsemblX38,401,357 - 38,456,454 (-)Ensembl
RefSeq Acc Id: ENSMUST00000136817
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX37,518,759 - 37,532,027 (-)Ensembl
GRCm38.p6 EnsemblX38,429,882 - 38,443,150 (-)Ensembl
RefSeq Acc Id: ENSMUST00000144663
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX37,541,767 - 37,545,291 (-)Ensembl
GRCm38.p6 EnsemblX38,452,890 - 38,456,414 (-)Ensembl
RefSeq Acc Id: NM_001017959   ⟹   NP_001017959
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X37,493,926 - 37,545,337 (-)NCBI
GRCm38X38,405,049 - 38,456,460 (-)NCBI
MGSCv37X35,758,241 - 35,809,632 (-)RGD
CeleraX26,048,091 - 26,103,100 (-)NCBI
cM MapX ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001290485   ⟹   NP_001277414
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X37,488,524 - 37,545,337 (-)NCBI
GRCm38X38,399,647 - 38,456,460 (-)NCBI
CeleraX26,048,091 - 26,103,100 (-)NCBI
Sequence:
RefSeq Acc Id: NM_010685   ⟹   NP_034815
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X37,508,379 - 37,545,337 (-)NCBI
GRCm38X38,419,502 - 38,456,460 (-)NCBI
MGSCv37X35,758,241 - 35,809,632 (-)RGD
CeleraX26,048,091 - 26,103,100 (-)NCBI
cM MapX ENTREZGENE
Sequence:
RefSeq Acc Id: NR_152733
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X37,493,926 - 37,545,337 (-)NCBI
GRCm38X38,405,049 - 38,456,460 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001017959   ⟸   NM_001017959
- Peptide Label: isoform 1 precursor
- UniProtKB: Q3TXG5 (UniProtKB/Swiss-Prot),   A2A430 (UniProtKB/Swiss-Prot),   Q8BSG8 (UniProtKB/Swiss-Prot),   P17047 (UniProtKB/Swiss-Prot),   Q3TWE1 (UniProtKB/TrEMBL),   Q3UIW3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_034815   ⟸   NM_010685
- Peptide Label: isoform 2 precursor
- UniProtKB: Q8C876 (UniProtKB/TrEMBL),   Q9CZU7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001277414   ⟸   NM_001290485
- Peptide Label: isoform 3 precursor
- UniProtKB: Q8C5K0 (UniProtKB/TrEMBL),   Q8C876 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000052283   ⟸   ENSMUST00000061755
RefSeq Acc Id: ENSMUSP00000016678   ⟸   ENSMUST00000016678
RefSeq Acc Id: ENSMUSP00000074448   ⟸   ENSMUST00000074913
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P17047-F1-model_v2 AlphaFold P17047 1-415 view protein structure

Promoters
RGD ID:6848529
Promoter ID:MM_ACW:53089
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_4Hour
Transcripts:LAMP2.FSEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36X35,758,361 - 35,758,861 (-)MPROMDB
RGD ID:6849283
Promoter ID:MM_XEF:7808
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_4Hour
Transcripts:NM_001034570,   NM_001113244
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36X35,788,306 - 35,788,806 (-)MPROMDB
RGD ID:6845891
Promoter ID:MM_KWN:60083
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver,   MEF_B6
Transcripts:OTTMUST00000045313
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36X35,795,336 - 35,797,222 (-)MPROMDB
RGD ID:6845892
Promoter ID:MM_KWN:60084
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000041711,   OTTMUST00000041813,   OTTMUST00000041814,   UC009SZZ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36X35,809,541 - 35,810,507 (-)MPROMDB
RGD ID:13680338
Promoter ID:EPDNEW_M24318
Type:initiation region
Name:Lamp2_1
Description:Mus musculus lysosomal-associated membrane protein 2 , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38X38,456,420 - 38,456,480EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:96748 AgrOrtholog
Ensembl Genes ENSMUSG00000016534 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000016678 ENTREZGENE
  ENSMUST00000016678.14 UniProtKB/Swiss-Prot
  ENSMUST00000061755 ENTREZGENE
  ENSMUST00000061755.9 UniProtKB/Swiss-Prot
  ENSMUST00000074913 ENTREZGENE
  ENSMUST00000074913.12 UniProtKB/Swiss-Prot
Gene3D-CATH 2.40.160.110 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Lamp2-like_luminal UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Lamp2-like_TM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LAMP_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Lysosome-assoc_membr_glycop UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:16784 UniProtKB/Swiss-Prot
MGD MGI:96748 ENTREZGENE
NCBI Gene 16784 ENTREZGENE
PANTHER FI04419P UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11506 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Lamp UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Lamp2_2nd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Lamp2 PhenoGen
PRINTS LYSASSOCTDMP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE LAMP_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LAMP_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LAMP_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2A430 ENTREZGENE
  LAMP2_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3TWE1 ENTREZGENE, UniProtKB/TrEMBL
  Q3TXG5 ENTREZGENE
  Q3UIW3 ENTREZGENE, UniProtKB/TrEMBL
  Q8BSG8 ENTREZGENE
  Q8C5K0 ENTREZGENE, UniProtKB/TrEMBL
  Q8C876 ENTREZGENE, UniProtKB/TrEMBL
  Q9CZU7 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A2A430 UniProtKB/Swiss-Prot
  Q3TXG5 UniProtKB/Swiss-Prot
  Q8BSG8 UniProtKB/Swiss-Prot